Wall clock time and date at job start Mon Mar 30 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47034 * 2 1 4 4 C 1.50705 * 109.46720 * 240.00253 * 2 1 3 5 5 H 1.07999 * 119.99510 * 245.92957 * 4 2 1 6 6 C 1.37875 * 120.00347 * 65.92914 * 4 2 1 7 7 N 1.31516 * 119.99827 * 5.64483 * 6 4 2 8 8 Si 1.86792 * 120.00296 * 185.36781 * 6 4 2 9 9 H 1.48497 * 109.47592 * 180.27599 * 8 6 4 10 10 H 1.48501 * 109.47346 * 300.27973 * 8 6 4 11 11 H 1.48507 * 109.46880 * 60.27494 * 8 6 4 12 12 N 1.46901 * 109.47191 * 120.00318 * 2 1 3 13 13 C 1.46899 * 110.99910 * 170.40831 * 12 2 1 14 14 C 1.46899 * 110.99799 * 294.36448 * 12 2 1 15 15 H 1.09005 * 109.46979 * 30.55196 * 14 12 2 16 16 C 1.53003 * 109.47104 * 150.54843 * 14 12 2 17 17 C 1.52996 * 109.47276 * 270.55027 * 14 12 2 18 18 H 1.09003 * 109.45931 * 303.82648 * 17 14 12 19 19 C 1.53036 * 109.46258 * 63.79386 * 17 14 12 20 20 C 1.53123 * 109.27743 * 179.19332 * 19 17 14 21 21 C 1.53117 * 109.16259 * 302.35298 * 20 19 17 22 22 C 1.53038 * 109.28142 * 57.65392 * 21 20 19 23 23 N 1.46844 * 109.46566 * 183.85259 * 17 14 12 24 24 H 1.08993 * 109.47332 * 185.20961 * 1 2 3 25 25 H 1.09000 * 109.47055 * 305.21295 * 1 2 3 26 26 H 1.09001 * 109.47175 * 65.20634 * 1 2 3 27 27 H 0.97007 * 120.00074 * 354.89835 * 7 6 4 28 28 H 1.09001 * 109.46950 * 64.24856 * 13 12 2 29 29 H 1.09000 * 109.46526 * 184.24056 * 13 12 2 30 30 H 1.08994 * 109.47167 * 304.24097 * 13 12 2 31 31 H 1.09005 * 109.47033 * 65.15296 * 16 14 12 32 32 H 1.08996 * 109.47386 * 185.15676 * 16 14 12 33 33 H 1.09004 * 109.47175 * 305.15454 * 16 14 12 34 34 H 1.08993 * 109.50603 * 299.14322 * 19 17 14 35 35 H 1.09004 * 109.50079 * 59.26192 * 19 17 14 36 36 H 1.08994 * 109.52195 * 182.44351 * 20 19 17 37 37 H 1.09002 * 109.51537 * 62.25867 * 20 19 17 38 38 H 1.09003 * 109.50276 * 297.70744 * 21 20 19 39 39 H 1.09006 * 109.50006 * 177.59330 * 21 20 19 40 40 H 1.08997 * 109.46145 * 180.80344 * 22 21 20 41 41 H 1.09002 * 109.46112 * 60.83212 * 22 21 20 42 42 H 1.00909 * 110.99668 * 54.13978 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5719 -1.6409 -1.1343 6 6 1.8029 -0.1724 -2.4791 7 7 1.2449 1.0132 -2.5919 8 14 2.2918 -1.1239 -4.0104 9 1 1.9469 -0.3306 -5.2174 10 1 3.7543 -1.3806 -3.9879 11 1 1.5628 -2.4173 -4.0432 12 7 2.0197 -0.6926 1.1994 13 6 3.4701 -0.9132 1.1246 14 6 1.6618 0.0469 2.4172 15 1 0.7258 0.5817 2.2556 16 6 1.4944 -0.9345 3.5790 17 6 2.7700 1.0476 2.7506 18 1 3.7192 0.5200 2.8452 19 6 2.8733 2.0857 1.6310 20 6 3.9698 3.0966 1.9784 21 6 3.6438 3.7487 3.3249 22 6 3.5183 2.6623 4.3953 23 7 2.4564 1.7212 4.0171 24 1 -0.3633 -1.0233 0.0933 25 1 -0.3633 0.5926 0.8396 26 1 -0.3633 0.4310 -0.9329 27 1 0.9273 1.4769 -1.8012 28 1 3.9840 0.0480 1.1187 29 1 3.7943 -1.4932 1.9886 30 1 3.7081 -1.4581 0.2111 31 1 2.4535 -1.4028 3.8002 32 1 1.1401 -0.3983 4.4594 33 1 0.7701 -1.7017 3.3051 34 1 3.1215 1.5872 0.6941 35 1 1.9202 2.6043 1.5266 36 1 4.0173 3.8627 1.2046 37 1 4.9296 2.5842 2.0446 38 1 2.7029 4.2934 3.2471 39 1 4.4427 4.4382 3.5981 40 1 3.2722 3.1222 5.3524 41 1 4.4639 2.1270 4.4822 42 1 2.2894 1.0500 4.7519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386563779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:58 Heat of formation + Delta-G solvation = 6.533163 kcal Electronic energy + Delta-G solvation = -19143.847579 eV Core-core repulsion = 16544.742715 eV Total energy + Delta-G solvation = -2599.104864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59519 -36.64506 -33.68088 -32.15717 -30.60360 -29.23159 -28.94633 -25.19279 -24.27768 -23.65760 -22.88256 -20.86469 -19.37975 -18.86419 -16.81187 -16.40334 -15.59952 -14.45184 -14.32726 -13.86363 -13.71206 -13.43530 -13.23866 -13.04649 -12.84578 -12.61181 -12.06957 -11.90279 -11.30389 -11.19906 -11.13078 -11.00201 -10.80721 -10.65498 -10.53003 -10.41313 -10.34195 -10.14174 -10.06383 -9.82959 -9.72949 -8.40000 -8.33028 -8.22284 -7.07869 -6.29312 -4.01474 3.44778 3.47560 3.65428 4.31934 4.54350 4.93789 4.98981 5.03884 5.13290 5.33702 5.40967 5.49755 5.58579 5.65801 5.78152 5.86797 5.90970 6.01439 6.04502 6.10105 6.20397 6.24391 6.31465 6.36491 6.43734 6.51297 6.63370 6.68515 6.72758 6.80950 6.89075 7.04435 7.14667 7.33991 7.53255 7.56328 7.92058 8.10856 8.46415 8.64414 8.92710 9.68763 11.06464 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.007595 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.513399 B = 3685.717339 C = 4094.628769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.184 3.816 3 H 0.016 0.984 4 C -0.587 4.587 5 H 0.056 0.944 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 1.066 2.934 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.288 1.288 12 N -0.521 5.521 13 C 0.029 3.971 14 C 0.077 3.923 15 H 0.082 0.918 16 C -0.137 4.137 17 C 0.066 3.934 18 H 0.040 0.960 19 C -0.125 4.125 20 C -0.120 4.120 21 C -0.116 4.116 22 C 0.060 3.940 23 N -0.685 5.685 24 H 0.042 0.958 25 H 0.017 0.983 26 H 0.058 0.942 27 H 0.271 0.729 28 H 0.022 0.978 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.100 1.810 12.031 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 H 0.033 0.967 4 C -0.626 4.626 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.552 5.552 8 Si 0.895 3.105 9 H -0.209 1.209 10 H -0.217 1.217 11 H -0.215 1.215 12 N -0.245 5.245 13 C -0.119 4.119 14 C -0.032 4.032 15 H 0.100 0.900 16 C -0.195 4.195 17 C -0.044 4.044 18 H 0.058 0.942 19 C -0.162 4.162 20 C -0.158 4.158 21 C -0.154 4.154 22 C -0.069 4.069 23 N -0.319 5.319 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.548 1.918 10.075 10.853 hybrid contribution 1.018 0.049 1.985 2.231 sum 4.567 1.966 12.060 13.045 Atomic orbital electron populations 1.21932 0.98764 0.99718 0.99128 1.19712 0.91552 0.93643 0.87340 0.96659 1.21993 1.39005 1.10102 0.91460 0.92586 1.25704 0.95387 0.96281 1.01122 1.70798 1.38349 1.12095 1.33916 0.83574 0.76015 0.75181 0.75706 1.20935 1.21661 1.21485 1.62293 1.12792 1.47483 1.01935 1.22371 0.89007 0.99320 1.01220 1.21788 0.97732 0.92010 0.91693 0.89972 1.21786 1.01274 0.99424 0.97050 1.22256 0.98185 0.94342 0.89650 0.94183 1.22054 0.99020 0.96421 0.98696 1.21577 0.98663 0.98731 0.96832 1.21580 1.01499 0.97250 0.95041 1.21859 0.92631 0.94435 0.97998 1.60359 1.44206 1.21892 1.05404 0.93835 0.96450 0.92305 0.91764 0.95966 0.94378 0.90313 0.93748 0.93049 0.91991 0.88996 0.91572 0.91999 0.92808 0.91340 0.92262 0.91374 0.95864 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.73 37.16 0.32 -2.95 16 2 C 0.18 4.47 1.34 -68.86 -0.09 4.38 16 3 H 0.02 0.41 3.99 -51.93 -0.21 0.20 16 4 C -0.59 -15.96 7.66 -34.44 -0.26 -16.23 16 5 H 0.06 1.54 6.27 -52.49 -0.33 1.21 16 6 C 0.02 0.53 5.22 -17.82 -0.09 0.44 16 7 N -0.91 -26.87 13.10 55.43 0.73 -26.15 16 8 Si 1.07 25.01 29.91 -169.99 -5.08 19.93 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.52 -11.00 4.45 -228.29 -1.02 -12.01 16 13 C 0.03 0.58 7.81 60.06 0.47 1.05 16 14 C 0.08 1.39 2.12 -67.71 -0.14 1.25 16 15 H 0.08 1.62 5.85 -51.93 -0.30 1.31 16 16 C -0.14 -2.08 8.80 37.16 0.33 -1.75 16 17 C 0.07 1.09 1.54 -67.73 -0.10 0.99 16 18 H 0.04 0.69 6.18 -51.93 -0.32 0.36 16 19 C -0.12 -2.24 3.62 -26.65 -0.10 -2.34 16 20 C -0.12 -1.83 6.00 -26.61 -0.16 -1.99 16 21 C -0.12 -1.51 6.09 -26.65 -0.16 -1.67 16 22 C 0.06 0.76 6.55 -3.83 -0.03 0.73 16 23 N -0.69 -9.73 6.46 -106.77 -0.69 -10.42 16 24 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.02 0.36 6.41 -51.93 -0.33 0.03 16 26 H 0.06 1.51 6.15 -51.93 -0.32 1.19 16 27 H 0.27 7.91 5.79 -40.82 -0.24 7.67 16 28 H 0.02 0.44 4.68 -51.93 -0.24 0.19 16 29 H 0.04 0.67 7.50 -51.93 -0.39 0.28 16 30 H 0.08 1.72 5.88 -51.93 -0.31 1.41 16 31 H 0.04 0.64 7.62 -51.93 -0.40 0.25 16 32 H 0.05 0.66 6.77 -51.93 -0.35 0.31 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.95 4.14 -51.93 -0.22 1.74 16 35 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.34 4.29 6.76 -39.29 -0.27 4.02 16 LS Contribution 297.96 15.07 4.49 4.49 Total: -1.00 -28.40 297.96 -8.41 -36.81 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.81 Total: 5.43 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -0.02 Total: -18.08 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.98 Total: -48.58 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.40 -8.41 -36.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.344 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds