Wall clock time and date at job start Mon Mar 30 2020 03:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47034 * 2 1 4 4 C 1.50705 * 109.46720 * 240.00253 * 2 1 3 5 5 H 1.07999 * 119.99510 * 245.92957 * 4 2 1 6 6 C 1.37875 * 120.00347 * 65.92914 * 4 2 1 7 7 N 1.31516 * 119.99827 * 5.64483 * 6 4 2 8 8 Si 1.86792 * 120.00296 * 185.36781 * 6 4 2 9 9 H 1.48497 * 109.47592 * 180.27599 * 8 6 4 10 10 H 1.48501 * 109.47346 * 300.27973 * 8 6 4 11 11 H 1.48507 * 109.46880 * 60.27494 * 8 6 4 12 12 N 1.46901 * 109.47191 * 120.00318 * 2 1 3 13 13 C 1.46899 * 110.99910 * 170.40831 * 12 2 1 14 14 C 1.46899 * 110.99799 * 294.36448 * 12 2 1 15 15 H 1.09005 * 109.46979 * 30.55196 * 14 12 2 16 16 C 1.53003 * 109.47104 * 150.54843 * 14 12 2 17 17 C 1.52996 * 109.47276 * 270.55027 * 14 12 2 18 18 H 1.09003 * 109.45931 * 303.82648 * 17 14 12 19 19 C 1.53036 * 109.46258 * 63.79386 * 17 14 12 20 20 C 1.53123 * 109.27743 * 179.19332 * 19 17 14 21 21 C 1.53117 * 109.16259 * 302.35298 * 20 19 17 22 22 C 1.53038 * 109.28142 * 57.65392 * 21 20 19 23 23 N 1.46844 * 109.46566 * 183.85259 * 17 14 12 24 24 H 1.08993 * 109.47332 * 185.20961 * 1 2 3 25 25 H 1.09000 * 109.47055 * 305.21295 * 1 2 3 26 26 H 1.09001 * 109.47175 * 65.20634 * 1 2 3 27 27 H 0.97007 * 120.00074 * 354.89835 * 7 6 4 28 28 H 1.09001 * 109.46950 * 64.24856 * 13 12 2 29 29 H 1.09000 * 109.46526 * 184.24056 * 13 12 2 30 30 H 1.08994 * 109.47167 * 304.24097 * 13 12 2 31 31 H 1.09005 * 109.47033 * 65.15296 * 16 14 12 32 32 H 1.08996 * 109.47386 * 185.15676 * 16 14 12 33 33 H 1.09004 * 109.47175 * 305.15454 * 16 14 12 34 34 H 1.08993 * 109.50603 * 299.14322 * 19 17 14 35 35 H 1.09004 * 109.50079 * 59.26192 * 19 17 14 36 36 H 1.08994 * 109.52195 * 182.44351 * 20 19 17 37 37 H 1.09002 * 109.51537 * 62.25867 * 20 19 17 38 38 H 1.09003 * 109.50276 * 297.70744 * 21 20 19 39 39 H 1.09006 * 109.50006 * 177.59330 * 21 20 19 40 40 H 1.08997 * 109.46145 * 180.80344 * 22 21 20 41 41 H 1.09002 * 109.46112 * 60.83212 * 22 21 20 42 42 H 1.00909 * 110.99668 * 54.13978 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5719 -1.6409 -1.1343 6 6 1.8029 -0.1724 -2.4791 7 7 1.2449 1.0132 -2.5919 8 14 2.2918 -1.1239 -4.0104 9 1 1.9469 -0.3306 -5.2174 10 1 3.7543 -1.3806 -3.9879 11 1 1.5628 -2.4173 -4.0432 12 7 2.0197 -0.6926 1.1994 13 6 3.4701 -0.9132 1.1246 14 6 1.6618 0.0469 2.4172 15 1 0.7258 0.5817 2.2556 16 6 1.4944 -0.9345 3.5790 17 6 2.7700 1.0476 2.7506 18 1 3.7192 0.5200 2.8452 19 6 2.8733 2.0857 1.6310 20 6 3.9698 3.0966 1.9784 21 6 3.6438 3.7487 3.3249 22 6 3.5183 2.6623 4.3953 23 7 2.4564 1.7212 4.0171 24 1 -0.3633 -1.0233 0.0933 25 1 -0.3633 0.5926 0.8396 26 1 -0.3633 0.4310 -0.9329 27 1 0.9273 1.4769 -1.8012 28 1 3.9840 0.0480 1.1187 29 1 3.7943 -1.4932 1.9886 30 1 3.7081 -1.4581 0.2111 31 1 2.4535 -1.4028 3.8002 32 1 1.1401 -0.3983 4.4594 33 1 0.7701 -1.7017 3.3051 34 1 3.1215 1.5872 0.6941 35 1 1.9202 2.6043 1.5266 36 1 4.0173 3.8627 1.2046 37 1 4.9296 2.5842 2.0446 38 1 2.7029 4.2934 3.2471 39 1 4.4427 4.4382 3.5981 40 1 3.2722 3.1222 5.3524 41 1 4.4639 2.1270 4.4822 42 1 2.2894 1.0500 4.7519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386563779.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:58 Heat of formation + Delta-G solvation = -12.731293 kcal Electronic energy + Delta-G solvation = -19144.682949 eV Core-core repulsion = 16544.742715 eV Total energy + Delta-G solvation = -2599.940234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.02268 -38.12081 -35.49382 -33.56607 -32.10004 -30.83807 -30.43782 -27.06584 -26.05461 -25.01009 -24.14588 -22.55839 -20.70357 -20.38036 -18.75533 -17.85548 -17.06183 -16.01632 -15.67088 -15.58647 -15.33877 -14.89251 -14.50903 -14.36075 -14.25460 -14.01176 -13.77274 -13.34290 -13.09807 -12.79470 -12.64602 -12.58589 -12.46462 -12.26016 -12.08510 -12.02033 -11.93763 -11.79421 -11.58485 -11.26341 -11.18194 -10.47729 -10.35967 -9.37988 -8.78662 -8.50828 -6.23346 1.53804 1.61246 1.79942 2.58878 3.12856 3.25996 3.41335 3.74869 3.80714 3.92299 4.13933 4.23544 4.29925 4.43309 4.46425 4.59624 4.64550 4.66648 4.73789 4.76333 4.80326 4.83656 4.92394 4.94837 4.99323 5.01968 5.05250 5.12654 5.18561 5.25296 5.35770 5.38823 5.46289 5.62500 5.94738 6.09065 6.13319 6.50235 6.55718 6.61611 6.85668 7.54758 8.84837 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028963 B = 0.007595 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.513399 B = 3685.717339 C = 4094.628769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.186 3.814 3 H 0.001 0.999 4 C -0.593 4.593 5 H 0.050 0.950 6 C -0.029 4.029 7 N -0.939 5.939 8 Si 1.110 2.890 9 H -0.287 1.287 10 H -0.274 1.274 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.075 3.925 15 H 0.062 0.938 16 C -0.128 4.128 17 C 0.081 3.919 18 H 0.040 0.960 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.112 4.112 22 C 0.059 3.941 23 N -0.689 5.689 24 H 0.039 0.961 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.260 0.740 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.031 0.969 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 1.440 14.099 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.079 3.921 3 H 0.018 0.982 4 C -0.632 4.632 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.578 5.578 8 Si 0.933 3.067 9 H -0.213 1.213 10 H -0.199 1.199 11 H -0.200 1.200 12 N -0.252 5.252 13 C -0.112 4.112 14 C -0.034 4.034 15 H 0.080 0.920 16 C -0.186 4.186 17 C -0.031 4.031 18 H 0.058 0.942 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.070 4.070 23 N -0.323 5.323 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.049 0.951 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.510 1.538 12.186 13.085 hybrid contribution 0.720 0.192 1.406 1.591 sum 5.230 1.729 13.592 14.666 Atomic orbital electron populations 1.21767 0.98603 0.99442 0.98552 1.19533 0.91595 0.92834 0.88140 0.98225 1.22309 1.38311 1.09758 0.92782 0.93228 1.26993 0.95044 0.96375 1.04324 1.70904 1.40226 1.13261 1.33394 0.83010 0.76797 0.74458 0.72455 1.21286 1.19939 1.20041 1.62263 1.13410 1.47677 1.01884 1.22300 0.88430 0.99254 1.01263 1.21847 0.97246 0.92949 0.91331 0.92010 1.21714 1.01759 0.98661 0.96475 1.21951 0.97325 0.93431 0.90353 0.94200 1.21884 0.98796 0.97214 0.97841 1.21570 0.97703 0.98026 0.98391 1.21576 1.02006 0.97721 0.93673 1.21968 0.92420 0.93832 0.98752 1.60286 1.45143 1.22205 1.04709 0.94197 0.94674 0.94739 0.92973 0.96180 0.91540 0.92676 0.92716 0.90363 0.92790 0.92857 0.93904 0.92504 0.92292 0.92187 0.89653 0.88741 0.95120 0.82861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 8.73 71.98 0.63 -5.51 16 2 C 0.19 9.31 1.34 44.17 0.06 9.36 16 3 H 0.00 0.03 3.99 -2.39 -0.01 0.02 16 4 C -0.59 -32.97 7.66 25.60 0.20 -32.77 16 5 H 0.05 2.77 6.27 -2.91 -0.02 2.75 16 6 C -0.03 -1.65 5.22 84.65 0.44 -1.21 16 7 N -0.94 -56.91 13.10 21.45 0.28 -56.63 16 8 Si 1.11 50.77 29.91 68.60 2.05 52.82 16 9 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.53 -22.29 4.45 -876.19 -3.90 -26.19 16 13 C 0.04 1.41 7.81 127.69 1.00 2.40 16 14 C 0.08 2.64 2.12 44.92 0.10 2.73 16 15 H 0.06 2.42 5.85 -2.38 -0.01 2.40 16 16 C -0.13 -3.54 8.80 71.98 0.63 -2.90 16 17 C 0.08 2.55 1.54 44.94 0.07 2.62 16 18 H 0.04 1.28 6.18 -2.39 -0.01 1.27 16 19 C -0.12 -4.38 3.62 30.65 0.11 -4.27 16 20 C -0.12 -3.53 6.00 30.67 0.18 -3.35 16 21 C -0.11 -2.64 6.09 30.65 0.19 -2.45 16 22 C 0.06 1.28 6.55 86.33 0.57 1.84 16 23 N -0.69 -17.67 6.46 -491.70 -3.18 -20.85 16 24 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.03 1.54 6.41 -2.39 -0.02 1.53 16 26 H 0.03 1.82 6.15 -2.39 -0.01 1.81 16 27 H 0.26 15.87 5.79 -92.70 -0.54 15.33 16 28 H 0.02 0.79 4.68 -2.39 -0.01 0.78 16 29 H 0.07 2.22 7.50 -2.39 -0.02 2.20 16 30 H 0.05 2.42 5.88 -2.39 -0.01 2.40 16 31 H 0.05 1.40 7.62 -2.38 -0.02 1.38 16 32 H 0.08 1.74 6.77 -2.39 -0.02 1.72 16 33 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 2.36 4.14 -2.39 -0.01 2.35 16 35 H 0.04 1.72 8.12 -2.39 -0.02 1.70 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.35 7.57 6.76 -89.69 -0.61 6.96 16 Total: -1.00 -62.40 297.96 0.05 -62.35 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.63 Total: 22.00 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 4.17 Total: -33.51 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -6.79 Total: -103.67 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -62.40 0.05 -62.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563779.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.614 kcal (2) G-P(sol) polarization free energy of solvation -62.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds