Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47612 * 2 1 4 4 C 1.50699 * 109.47211 * 239.99118 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.65133 * 4 2 1 6 6 C 1.37876 * 119.99587 * 65.65572 * 4 2 1 7 7 N 1.31518 * 120.00232 * 197.35160 * 6 4 2 8 8 Si 1.86801 * 120.00214 * 17.34824 * 6 4 2 9 9 H 1.48497 * 109.47355 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47451 * 300.00449 * 8 6 4 11 11 H 1.48499 * 109.47130 * 59.99983 * 8 6 4 12 12 N 1.46906 * 109.46729 * 119.99861 * 2 1 3 13 13 C 1.46890 * 111.00523 * 58.95253 * 12 2 1 14 14 C 1.46906 * 110.99807 * 294.99631 * 12 2 1 15 15 H 1.08999 * 109.47222 * 78.41852 * 14 12 2 16 16 C 1.53004 * 109.47180 * 318.41635 * 14 12 2 17 17 C 1.53005 * 109.47032 * 198.41894 * 14 12 2 18 18 H 1.09002 * 109.45847 * 57.50529 * 17 14 12 19 19 C 1.53039 * 109.45942 * 177.48463 * 17 14 12 20 20 C 1.53123 * 109.27147 * 179.19570 * 19 17 14 21 21 C 1.53112 * 109.16274 * 302.34396 * 20 19 17 22 22 C 1.53042 * 109.27668 * 57.65757 * 21 20 19 23 23 N 1.46841 * 109.46105 * 297.53967 * 17 14 12 24 24 H 1.09001 * 109.47229 * 295.96466 * 1 2 3 25 25 H 1.09002 * 109.47499 * 55.95948 * 1 2 3 26 26 H 1.09000 * 109.47350 * 175.96034 * 1 2 3 27 27 H 0.97003 * 119.99583 * 354.94447 * 7 6 4 28 28 H 1.09008 * 109.47318 * 50.57684 * 13 12 2 29 29 H 1.08999 * 109.47883 * 170.58055 * 13 12 2 30 30 H 1.09002 * 109.47306 * 290.58151 * 13 12 2 31 31 H 1.09007 * 109.46314 * 60.00318 * 16 14 12 32 32 H 1.08993 * 109.46890 * 179.97438 * 16 14 12 33 33 H 1.08999 * 109.47220 * 300.00218 * 16 14 12 34 34 H 1.08999 * 109.50541 * 299.13514 * 19 17 14 35 35 H 1.09002 * 109.49848 * 59.21927 * 19 17 14 36 36 H 1.08991 * 109.52352 * 62.25631 * 20 19 17 37 37 H 1.09003 * 109.51880 * 182.44322 * 20 19 17 38 38 H 1.08997 * 109.50784 * 177.59985 * 21 20 19 39 39 H 1.09002 * 109.50762 * 297.72072 * 21 20 19 40 40 H 1.08992 * 109.45988 * 60.83823 * 22 21 20 41 41 H 1.09004 * 109.45760 * 180.80110 * 22 21 20 42 42 H 1.00897 * 110.99996 * 302.33747 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.5759 -1.6388 -1.1338 6 6 1.7980 -0.1756 -2.4793 7 7 1.9195 -0.9286 -3.5506 8 14 1.3078 1.6189 -2.6498 9 1 1.1147 1.9450 -4.0856 10 1 0.0405 1.8580 -1.9136 11 1 2.3779 2.4801 -2.0856 12 7 2.0195 -0.6925 1.1995 13 6 1.5282 -2.0760 1.2462 14 6 1.6486 0.0393 2.4181 15 1 0.6029 -0.1565 2.6554 16 6 1.8482 1.5394 2.1929 17 6 2.5305 -0.4238 3.5795 18 1 3.5787 -0.2686 3.3238 19 6 2.1867 0.3828 4.8338 20 6 3.0575 -0.0977 5.9981 21 6 2.8296 -1.5968 6.2108 22 6 3.1547 -2.3459 4.9165 23 7 2.2952 -1.8507 3.8338 24 1 -0.3634 0.4499 0.9239 25 1 -0.3634 0.5753 -0.8516 26 1 -0.3634 -1.0251 -0.0724 27 1 2.2446 -1.8390 -3.4692 28 1 1.7311 -2.5660 0.2938 29 1 2.0346 -2.6147 2.0471 30 1 0.4542 -2.0741 1.4321 31 1 1.2198 1.8692 1.3654 32 1 1.5725 2.0824 3.0968 33 1 2.8938 1.7353 1.9556 34 1 2.3764 1.4403 4.6498 35 1 1.1350 0.2394 5.0818 36 1 4.1072 0.0819 5.7662 37 1 2.7858 0.4442 6.9040 38 1 3.4785 -1.9537 7.0106 39 1 1.7882 -1.7719 6.4809 40 1 4.1998 -2.1816 4.6546 41 1 2.9798 -3.4122 5.0604 42 1 1.3223 -2.0264 4.0354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386563782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = 5.840770 kcal Electronic energy + Delta-G solvation = -18839.704253 eV Core-core repulsion = 16240.569364 eV Total energy + Delta-G solvation = -2599.134889 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44672 -37.11370 -33.19684 -31.91163 -31.59127 -29.19110 -28.82768 -24.80317 -24.25758 -23.57081 -23.17445 -20.72323 -20.25274 -18.41219 -17.15901 -15.85020 -15.32090 -14.92894 -14.63556 -14.25021 -13.92300 -13.59632 -13.35609 -12.99990 -12.76119 -12.16568 -12.04138 -11.80070 -11.52477 -11.45977 -11.37935 -11.25794 -10.98328 -10.85964 -10.68539 -10.49955 -10.32957 -10.25553 -10.10863 -9.63331 -9.50585 -8.80030 -8.06988 -7.92642 -7.03594 -6.33887 -3.90166 3.41456 3.47644 3.64607 4.35107 4.56757 4.64662 4.76931 4.93114 4.99130 5.29791 5.34631 5.39113 5.43611 5.51430 5.69379 5.71968 5.81063 5.85693 5.93445 5.97990 6.01829 6.10854 6.19962 6.26407 6.39273 6.45866 6.51169 6.58957 6.65765 6.72474 6.87332 7.09759 7.19898 7.29973 7.44814 7.56003 7.94057 8.33288 8.49980 8.62385 9.12294 9.76121 11.06927 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040815 B = 0.006536 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.850797 B = 4282.889976 C = 4666.334255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.179 3.821 3 H 0.035 0.965 4 C -0.579 4.579 5 H 0.063 0.937 6 C 0.027 3.973 7 N -0.913 5.913 8 Si 1.043 2.957 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.511 5.511 13 C 0.024 3.976 14 C 0.087 3.913 15 H 0.028 0.972 16 C -0.154 4.154 17 C 0.101 3.899 18 H 0.086 0.914 19 C -0.154 4.154 20 C -0.118 4.118 21 C -0.157 4.157 22 C 0.055 3.945 23 N -0.666 5.666 24 H 0.020 0.980 25 H 0.054 0.946 26 H 0.046 0.954 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.091 0.909 30 H -0.002 1.002 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 1.820 18.508 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.071 3.929 3 H 0.053 0.947 4 C -0.618 4.618 5 H 0.081 0.919 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.872 3.128 9 H -0.213 1.213 10 H -0.203 1.203 11 H -0.210 1.210 12 N -0.233 5.233 13 C -0.124 4.124 14 C -0.022 4.022 15 H 0.045 0.955 16 C -0.211 4.211 17 C -0.010 4.010 18 H 0.105 0.895 19 C -0.194 4.194 20 C -0.155 4.155 21 C -0.197 4.197 22 C -0.075 4.075 23 N -0.293 5.293 24 H 0.039 0.961 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.017 0.983 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.263 2.725 16.846 17.067 hybrid contribution -0.977 -0.710 1.981 2.320 sum -0.714 2.015 18.828 18.949 Atomic orbital electron populations 1.22896 1.01858 1.00850 0.98905 1.19748 0.88788 0.95189 0.89175 0.94692 1.22011 1.39249 1.10020 0.90480 0.91873 1.25641 0.95132 1.04775 0.92202 1.70859 1.42691 1.09872 1.31406 0.84099 0.76880 0.75958 0.75825 1.21337 1.20286 1.20987 1.62159 1.58887 1.02050 1.00250 1.22650 0.95777 0.90792 1.03169 1.21536 0.95372 0.93624 0.91714 0.95457 1.22071 1.02914 0.95080 1.01060 1.21652 1.01169 0.85855 0.92309 0.89550 1.22361 0.99496 1.01201 0.96304 1.21540 1.00239 0.95646 0.98109 1.22275 1.01433 0.96388 0.99582 1.22037 0.98585 0.98413 0.88420 1.60893 1.09835 1.16936 1.41667 0.96129 0.92736 0.93467 0.92398 0.91813 0.89081 0.98324 0.91698 0.93162 0.91841 0.91048 0.92443 0.91914 0.92501 0.91964 0.92385 0.90980 0.91125 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.22 7.81 37.15 0.29 -3.93 16 2 C 0.18 4.31 1.40 -68.86 -0.10 4.21 16 3 H 0.04 0.86 4.56 -51.93 -0.24 0.62 16 4 C -0.58 -16.50 8.20 -34.44 -0.28 -16.78 16 5 H 0.06 1.96 6.83 -52.49 -0.36 1.61 16 6 C 0.03 0.78 5.35 -17.82 -0.10 0.68 16 7 N -0.91 -28.50 13.70 55.43 0.76 -27.74 16 8 Si 1.04 25.61 26.42 -169.99 -4.49 21.12 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.27 5.49 56.52 0.31 -5.96 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 N -0.51 -10.84 4.60 -228.29 -1.05 -11.89 16 13 C 0.02 0.50 8.17 60.06 0.49 0.99 16 14 C 0.09 1.49 1.40 -67.70 -0.09 1.39 16 15 H 0.03 0.48 7.10 -51.93 -0.37 0.11 16 16 C -0.15 -2.49 7.73 37.16 0.29 -2.20 16 17 C 0.10 1.43 2.23 -67.72 -0.15 1.28 16 18 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 19 C -0.15 -1.78 4.91 -26.65 -0.13 -1.91 16 20 C -0.12 -1.19 6.00 -26.61 -0.16 -1.35 16 21 C -0.16 -1.51 6.08 -26.65 -0.16 -1.67 16 22 C 0.06 0.61 6.55 -3.83 -0.03 0.59 16 23 N -0.67 -8.92 3.27 -106.76 -0.35 -9.27 16 24 H 0.02 0.40 6.23 -51.93 -0.32 0.08 16 25 H 0.05 1.28 4.77 -51.93 -0.25 1.03 16 26 H 0.05 1.10 6.83 -51.93 -0.35 0.74 16 27 H 0.27 8.31 8.73 -40.82 -0.36 7.95 16 28 H 0.06 1.50 6.18 -51.92 -0.32 1.18 16 29 H 0.09 1.69 5.37 -51.93 -0.28 1.41 16 30 H 0.00 -0.03 6.77 -51.93 -0.35 -0.39 16 31 H 0.06 1.15 5.52 -51.92 -0.29 0.86 16 32 H 0.05 0.66 6.40 -51.93 -0.33 0.33 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.81 6.43 -51.93 -0.33 0.48 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.33 4.28 8.76 -39.29 -0.34 3.93 16 LS Contribution 297.28 15.07 4.48 4.48 Total: -1.00 -29.91 297.28 -7.97 -37.87 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.19 Total: 4.13 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -0.13 Total: -18.69 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: -0.64 Total: -48.90 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.49 Total: 21.12 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.91 -7.97 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.715 kcal (2) G-P(sol) polarization free energy of solvation -29.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds