Wall clock time and date at job start Mon Mar 30 2020 03:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47612 * 2 1 4 4 C 1.50699 * 109.47211 * 239.99118 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.65133 * 4 2 1 6 6 C 1.37876 * 119.99587 * 65.65572 * 4 2 1 7 7 N 1.31518 * 120.00232 * 197.35160 * 6 4 2 8 8 Si 1.86801 * 120.00214 * 17.34824 * 6 4 2 9 9 H 1.48497 * 109.47355 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47451 * 300.00449 * 8 6 4 11 11 H 1.48499 * 109.47130 * 59.99983 * 8 6 4 12 12 N 1.46906 * 109.46729 * 119.99861 * 2 1 3 13 13 C 1.46890 * 111.00523 * 58.95253 * 12 2 1 14 14 C 1.46906 * 110.99807 * 294.99631 * 12 2 1 15 15 H 1.08999 * 109.47222 * 78.41852 * 14 12 2 16 16 C 1.53004 * 109.47180 * 318.41635 * 14 12 2 17 17 C 1.53005 * 109.47032 * 198.41894 * 14 12 2 18 18 H 1.09002 * 109.45847 * 57.50529 * 17 14 12 19 19 C 1.53039 * 109.45942 * 177.48463 * 17 14 12 20 20 C 1.53123 * 109.27147 * 179.19570 * 19 17 14 21 21 C 1.53112 * 109.16274 * 302.34396 * 20 19 17 22 22 C 1.53042 * 109.27668 * 57.65757 * 21 20 19 23 23 N 1.46841 * 109.46105 * 297.53967 * 17 14 12 24 24 H 1.09001 * 109.47229 * 295.96466 * 1 2 3 25 25 H 1.09002 * 109.47499 * 55.95948 * 1 2 3 26 26 H 1.09000 * 109.47350 * 175.96034 * 1 2 3 27 27 H 0.97003 * 119.99583 * 354.94447 * 7 6 4 28 28 H 1.09008 * 109.47318 * 50.57684 * 13 12 2 29 29 H 1.08999 * 109.47883 * 170.58055 * 13 12 2 30 30 H 1.09002 * 109.47306 * 290.58151 * 13 12 2 31 31 H 1.09007 * 109.46314 * 60.00318 * 16 14 12 32 32 H 1.08993 * 109.46890 * 179.97438 * 16 14 12 33 33 H 1.08999 * 109.47220 * 300.00218 * 16 14 12 34 34 H 1.08999 * 109.50541 * 299.13514 * 19 17 14 35 35 H 1.09002 * 109.49848 * 59.21927 * 19 17 14 36 36 H 1.08991 * 109.52352 * 62.25631 * 20 19 17 37 37 H 1.09003 * 109.51880 * 182.44322 * 20 19 17 38 38 H 1.08997 * 109.50784 * 177.59985 * 21 20 19 39 39 H 1.09002 * 109.50762 * 297.72072 * 21 20 19 40 40 H 1.08992 * 109.45988 * 60.83823 * 22 21 20 41 41 H 1.09004 * 109.45760 * 180.80110 * 22 21 20 42 42 H 1.00897 * 110.99996 * 302.33747 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.5759 -1.6388 -1.1338 6 6 1.7980 -0.1756 -2.4793 7 7 1.9195 -0.9286 -3.5506 8 14 1.3078 1.6189 -2.6498 9 1 1.1147 1.9450 -4.0856 10 1 0.0405 1.8580 -1.9136 11 1 2.3779 2.4801 -2.0856 12 7 2.0195 -0.6925 1.1995 13 6 1.5282 -2.0760 1.2462 14 6 1.6486 0.0393 2.4181 15 1 0.6029 -0.1565 2.6554 16 6 1.8482 1.5394 2.1929 17 6 2.5305 -0.4238 3.5795 18 1 3.5787 -0.2686 3.3238 19 6 2.1867 0.3828 4.8338 20 6 3.0575 -0.0977 5.9981 21 6 2.8296 -1.5968 6.2108 22 6 3.1547 -2.3459 4.9165 23 7 2.2952 -1.8507 3.8338 24 1 -0.3634 0.4499 0.9239 25 1 -0.3634 0.5753 -0.8516 26 1 -0.3634 -1.0251 -0.0724 27 1 2.2446 -1.8390 -3.4692 28 1 1.7311 -2.5660 0.2938 29 1 2.0346 -2.6147 2.0471 30 1 0.4542 -2.0741 1.4321 31 1 1.2198 1.8692 1.3654 32 1 1.5725 2.0824 3.0968 33 1 2.8938 1.7353 1.9556 34 1 2.3764 1.4403 4.6498 35 1 1.1350 0.2394 5.0818 36 1 4.1072 0.0819 5.7662 37 1 2.7858 0.4442 6.9040 38 1 3.4785 -1.9537 7.0106 39 1 1.7882 -1.7719 6.4809 40 1 4.1998 -2.1816 4.6546 41 1 2.9798 -3.4122 5.0604 42 1 1.3223 -2.0264 4.0354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386563782.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:00 Heat of formation + Delta-G solvation = -15.044596 kcal Electronic energy + Delta-G solvation = -18840.609911 eV Core-core repulsion = 16240.569364 eV Total energy + Delta-G solvation = -2600.040546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.65298 -38.54981 -35.03614 -33.33466 -32.78930 -30.87851 -30.05406 -26.85090 -25.83386 -24.87597 -24.16402 -22.12766 -21.24318 -20.16397 -19.22388 -17.12783 -16.79263 -16.14880 -15.76422 -15.62313 -15.19407 -15.07410 -14.69775 -14.61160 -14.13389 -13.60206 -13.49418 -13.28343 -13.18697 -13.01143 -12.63879 -12.52645 -12.34427 -12.15580 -12.06157 -11.98115 -11.73518 -11.62120 -11.49857 -11.34862 -11.06911 -10.92460 -10.26422 -9.07941 -8.69392 -8.63624 -6.24710 1.44573 1.54059 1.71961 2.52234 3.13588 3.30979 3.37901 3.87895 3.96958 4.12562 4.24536 4.27694 4.34922 4.50206 4.51950 4.58108 4.69065 4.73069 4.75330 4.78361 4.82744 4.85054 4.97754 5.07968 5.10361 5.14223 5.15534 5.22106 5.25018 5.30972 5.34251 5.44415 5.55339 5.61750 5.95784 6.12097 6.23020 6.46535 6.55702 6.79695 6.88889 7.52195 8.71446 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040815 B = 0.006536 C = 0.005999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.850797 B = 4282.889976 C = 4666.334255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.181 3.819 3 H 0.041 0.959 4 C -0.580 4.580 5 H 0.019 0.981 6 C -0.027 4.027 7 N -0.946 5.946 8 Si 1.082 2.918 9 H -0.292 1.292 10 H -0.242 1.242 11 H -0.263 1.263 12 N -0.528 5.528 13 C 0.038 3.962 14 C 0.086 3.914 15 H 0.032 0.968 16 C -0.153 4.153 17 C 0.109 3.891 18 H 0.065 0.935 19 C -0.146 4.146 20 C -0.116 4.116 21 C -0.150 4.150 22 C 0.056 3.944 23 N -0.684 5.684 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.031 0.969 27 H 0.248 0.752 28 H 0.019 0.981 29 H 0.112 0.888 30 H 0.004 0.996 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 3.707 21.483 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.073 3.927 3 H 0.059 0.941 4 C -0.618 4.618 5 H 0.037 0.963 6 C -0.223 4.223 7 N -0.583 5.583 8 Si 0.903 3.097 9 H -0.218 1.218 10 H -0.167 1.167 11 H -0.188 1.188 12 N -0.251 5.251 13 C -0.110 4.110 14 C -0.023 4.023 15 H 0.049 0.951 16 C -0.210 4.210 17 C -0.001 4.001 18 H 0.084 0.916 19 C -0.185 4.185 20 C -0.154 4.154 21 C -0.189 4.189 22 C -0.073 4.073 23 N -0.312 5.312 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.130 0.870 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.627 4.596 19.868 20.402 hybrid contribution -0.628 -1.418 1.119 1.912 sum -1.254 3.178 20.987 21.263 Atomic orbital electron populations 1.22725 1.00448 1.00136 1.00251 1.19574 0.89639 0.94886 0.88600 0.94091 1.22224 1.38083 1.08515 0.92962 0.96308 1.27129 0.94887 1.08415 0.91915 1.70999 1.45325 1.09373 1.32607 0.83643 0.78796 0.71067 0.76163 1.21819 1.16696 1.18817 1.62078 1.59469 1.02361 1.01172 1.22532 0.96310 0.90744 1.01429 1.21684 0.96147 0.93944 0.90479 0.95063 1.22073 1.02164 0.94532 1.02273 1.21440 0.99183 0.86943 0.92580 0.91645 1.22266 1.00163 1.00902 0.95203 1.21539 0.99697 0.96074 0.98063 1.22196 1.02087 0.95802 0.98838 1.22046 0.97473 0.99168 0.88623 1.60742 1.10525 1.16611 1.43363 0.92952 0.93313 0.94966 0.94317 0.96191 0.86992 0.97788 0.93051 0.89667 0.92687 0.90504 0.91756 0.92326 0.90879 0.90540 0.91802 0.92046 0.90193 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.73 7.81 71.98 0.56 -7.17 16 2 C 0.18 8.65 1.40 44.17 0.06 8.71 16 3 H 0.04 1.94 4.56 -2.39 -0.01 1.93 16 4 C -0.58 -34.07 8.20 25.60 0.21 -33.86 16 5 H 0.02 1.24 6.83 -2.91 -0.02 1.22 16 6 C -0.03 -1.60 5.35 84.65 0.45 -1.15 16 7 N -0.95 -61.29 13.70 21.45 0.29 -61.00 16 8 Si 1.08 50.90 26.42 68.60 1.81 52.71 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.24 -10.05 5.49 99.48 0.55 -9.51 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 12 N -0.53 -22.21 4.60 -876.18 -4.03 -26.24 16 13 C 0.04 1.59 8.17 127.69 1.04 2.63 16 14 C 0.09 2.76 1.40 44.92 0.06 2.82 16 15 H 0.03 1.00 7.10 -2.39 -0.02 0.98 16 16 C -0.15 -4.50 7.73 71.98 0.56 -3.94 16 17 C 0.11 2.88 2.23 44.94 0.10 2.98 16 18 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 19 C -0.15 -2.86 4.91 30.65 0.15 -2.71 16 20 C -0.12 -1.94 6.00 30.67 0.18 -1.76 16 21 C -0.15 -2.38 6.08 30.65 0.19 -2.19 16 22 C 0.06 1.12 6.55 86.33 0.57 1.69 16 23 N -0.68 -17.08 3.27 -491.68 -1.61 -18.69 16 24 H 0.05 1.94 6.23 -2.39 -0.01 1.93 16 25 H 0.05 2.17 4.77 -2.39 -0.01 2.15 16 26 H 0.03 1.47 6.83 -2.39 -0.02 1.45 16 27 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 28 H 0.02 0.97 6.18 -2.38 -0.01 0.95 16 29 H 0.11 4.14 5.37 -2.39 -0.01 4.13 16 30 H 0.00 0.15 6.77 -2.39 -0.02 0.13 16 31 H 0.05 1.65 5.52 -2.38 -0.01 1.64 16 32 H 0.08 1.90 6.40 -2.39 -0.02 1.89 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.34 7.88 8.76 -89.70 -0.79 7.09 16 Total: -1.00 -67.08 297.28 0.62 -66.47 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.01 Total: 20.68 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 4.14 Total: -33.94 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -5.34 Total: -105.92 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.81 Total: 52.71 kcal Total: -67.08 0.62 -66.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563782.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.424 kcal (2) G-P(sol) polarization free energy of solvation -67.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds