Wall clock time and date at job start Mon Mar 30 2020 03:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47585 * 239.99781 * 2 1 3 5 5 H 1.07999 * 119.99853 * 335.07091 * 4 2 1 6 6 C 1.37879 * 120.00349 * 155.06360 * 4 2 1 7 7 N 1.31512 * 119.99864 * 357.40304 * 6 4 2 8 8 Si 1.86802 * 119.99817 * 177.13264 * 6 4 2 9 9 H 1.48495 * 109.47532 * 60.00388 * 8 6 4 10 10 H 1.48506 * 109.46436 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47192 * 299.99684 * 8 6 4 12 12 N 1.46901 * 109.47212 * 120.00190 * 2 1 3 13 13 C 1.46897 * 111.00220 * 58.94986 * 12 2 1 14 14 C 1.46910 * 110.99631 * 295.00219 * 12 2 1 15 15 H 1.08992 * 109.47178 * 68.54329 * 14 12 2 16 16 C 1.53003 * 109.46760 * 308.54200 * 14 12 2 17 17 C 1.53001 * 109.47009 * 188.54465 * 14 12 2 18 18 H 1.09003 * 109.46415 * 302.81213 * 17 14 12 19 19 C 1.53035 * 109.46237 * 182.82409 * 17 14 12 20 20 C 1.53120 * 109.27809 * 180.80250 * 19 17 14 21 21 C 1.53120 * 109.15865 * 57.65569 * 20 19 17 22 22 C 1.53034 * 109.28372 * 302.34863 * 21 20 19 23 23 N 1.46841 * 109.52302 * 59.17316 * 22 21 20 24 24 H 1.09005 * 109.46748 * 173.29555 * 1 2 3 25 25 H 1.09000 * 109.47351 * 293.29425 * 1 2 3 26 26 H 1.08999 * 109.47249 * 53.30104 * 1 2 3 27 27 H 0.97003 * 119.99647 * 5.91797 * 7 6 4 28 28 H 1.09008 * 109.46444 * 53.95496 * 13 12 2 29 29 H 1.09002 * 109.47098 * 173.94965 * 13 12 2 30 30 H 1.09001 * 109.47472 * 293.95455 * 13 12 2 31 31 H 1.09002 * 109.46785 * 180.02562 * 16 14 12 32 32 H 1.08992 * 109.47380 * 300.00005 * 16 14 12 33 33 H 1.08997 * 109.47243 * 60.00627 * 16 14 12 34 34 H 1.08994 * 109.50623 * 300.74615 * 19 17 14 35 35 H 1.09001 * 109.49976 * 60.86984 * 19 17 14 36 36 H 1.08992 * 109.52119 * 177.56112 * 20 19 17 37 37 H 1.09000 * 109.52730 * 297.75544 * 20 19 17 38 38 H 1.09004 * 109.49873 * 62.28524 * 21 20 19 39 39 H 1.09005 * 109.50369 * 182.40112 * 21 20 19 40 40 H 1.09001 * 109.46679 * 179.19395 * 22 21 20 41 41 H 1.09004 * 109.45822 * 299.17070 * 22 21 20 42 42 H 1.00902 * 110.99799 * 174.16227 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4128 -1.4478 -1.7190 6 6 3.2830 -0.4190 -1.7324 7 7 4.0168 0.5151 -1.1680 8 14 3.9381 -1.3562 -3.2096 9 1 3.0307 -1.1528 -4.3672 10 1 5.2949 -0.8576 -3.5500 11 1 4.0101 -2.8036 -2.8853 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0392 2.4181 15 1 0.5690 -0.0128 2.5585 16 6 2.0758 1.5022 2.2844 17 6 2.3505 -0.5890 3.6237 18 1 2.0851 -1.6442 3.6894 19 6 1.9093 0.1284 4.9015 20 6 2.6293 -0.4902 6.1029 21 6 4.1421 -0.3858 5.8905 22 6 4.5187 -1.0882 4.5841 23 7 3.8047 -0.4596 3.4655 24 1 -0.3633 -1.0207 -0.1200 25 1 -0.3634 0.4064 0.9439 26 1 -0.3634 0.6141 -0.8240 27 1 3.7163 0.9390 -0.3489 28 1 1.7844 -2.5840 0.3161 29 1 1.9903 -2.5978 2.0841 30 1 0.4456 -2.0732 1.3722 31 1 1.8009 2.0450 3.1888 32 1 3.1554 1.5542 2.1440 33 1 1.5757 1.9498 1.4256 34 1 2.1623 1.1862 4.8308 35 1 0.8321 0.0188 5.0269 36 1 2.3510 0.0461 7.0100 37 1 2.3463 -1.5386 6.1971 38 1 4.4302 0.6640 5.8353 39 1 4.6602 -0.8627 6.7226 40 1 5.5934 -1.0033 4.4227 41 1 4.2427 -2.1410 4.6452 42 1 4.1079 -0.8422 2.5824 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386563791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:02 Heat of formation + Delta-G solvation = -6.637222 kcal Electronic energy + Delta-G solvation = -19026.471172 eV Core-core repulsion = 16426.795197 eV Total energy + Delta-G solvation = -2599.675975 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.11032 -36.89335 -33.12192 -31.63323 -31.41425 -29.04781 -28.58784 -24.63470 -24.22659 -23.86520 -22.96935 -20.98610 -19.47733 -18.29991 -16.55414 -15.90549 -15.20708 -14.86736 -14.31224 -13.72490 -13.69472 -13.55873 -13.27066 -12.95818 -12.69719 -12.49439 -12.01967 -11.71058 -11.57376 -11.27281 -11.15580 -10.87156 -10.75707 -10.72829 -10.58201 -10.34225 -10.23965 -10.12975 -10.04482 -9.86267 -9.36918 -8.49623 -8.20525 -7.86405 -7.00305 -6.21803 -3.97340 3.48262 3.49650 3.68378 4.59202 4.62059 4.84821 5.04342 5.06681 5.22196 5.47261 5.57462 5.63383 5.71604 5.75328 5.86805 5.92457 6.03211 6.06982 6.08870 6.17633 6.23128 6.26874 6.33954 6.36441 6.38777 6.43812 6.47760 6.59332 6.67383 6.75571 6.91418 7.04508 7.13131 7.39555 7.59354 7.97406 8.04649 8.39414 8.58073 8.64506 9.02481 9.80231 11.17529 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.007380 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.285688 B = 3793.360535 C = 4189.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.186 3.814 3 H 0.056 0.944 4 C -0.589 4.589 5 H 0.042 0.958 6 C 0.035 3.965 7 N -0.898 5.898 8 Si 1.063 2.937 9 H -0.291 1.291 10 H -0.284 1.284 11 H -0.290 1.290 12 N -0.520 5.520 13 C 0.038 3.962 14 C 0.080 3.920 15 H 0.025 0.975 16 C -0.133 4.133 17 C 0.101 3.899 18 H 0.029 0.971 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.115 4.115 22 C 0.058 3.942 23 N -0.673 5.673 24 H 0.039 0.961 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.279 0.721 28 H 0.075 0.925 29 H 0.036 0.964 30 H 0.004 0.996 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.019 0.981 42 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.327 -1.924 11.691 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.082 3.918 3 H 0.074 0.926 4 C -0.628 4.628 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.533 5.533 8 Si 0.892 3.108 9 H -0.218 1.218 10 H -0.209 1.209 11 H -0.217 1.217 12 N -0.245 5.245 13 C -0.110 4.110 14 C -0.029 4.029 15 H 0.043 0.957 16 C -0.191 4.191 17 C -0.009 4.009 18 H 0.047 0.953 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.072 4.072 23 N -0.308 5.308 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.022 0.978 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.507 -1.378 10.867 10.966 hybrid contribution -2.447 -1.067 0.982 2.844 sum -2.954 -2.445 11.849 12.454 Atomic orbital electron populations 1.22381 1.01595 1.00008 0.98605 1.19581 0.88023 0.96266 0.87972 0.92649 1.21757 1.03605 1.26629 1.10856 0.93935 1.25641 0.93683 0.95873 1.02068 1.70680 1.40612 1.22032 1.19980 0.83652 0.76262 0.75573 0.75313 1.21808 1.20923 1.21699 1.62901 1.59213 1.01092 1.01285 1.22117 0.95449 0.92204 1.01273 1.21652 0.95136 0.95008 0.91143 0.95732 1.21779 1.03471 0.94240 0.99589 1.21422 0.88768 0.96651 0.94079 0.95331 1.21690 0.98693 1.00992 0.93909 1.21550 0.95810 1.00317 0.97912 1.21571 0.95670 1.01492 0.96587 1.21862 0.98391 0.95011 0.91926 1.60200 1.03878 1.61266 1.05447 0.94146 0.95600 0.93694 0.90873 0.90616 0.94569 0.97790 0.93944 0.90610 0.93254 0.90857 0.92522 0.92439 0.92831 0.91322 0.92457 0.91305 0.96244 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 8.42 37.15 0.31 -3.30 16 2 C 0.19 4.50 1.55 -68.87 -0.11 4.39 16 3 H 0.06 1.46 4.51 -51.93 -0.23 1.22 16 4 C -0.59 -15.97 7.06 -34.44 -0.24 -16.21 16 5 H 0.04 1.17 7.81 -52.49 -0.41 0.76 16 6 C 0.04 0.98 5.46 -17.82 -0.10 0.88 16 7 N -0.90 -26.32 13.61 55.43 0.75 -25.56 16 8 Si 1.06 24.95 29.90 -169.99 -5.08 19.87 16 9 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.52 -11.25 3.94 -228.29 -0.90 -12.15 16 13 C 0.04 0.78 8.48 60.06 0.51 1.29 16 14 C 0.08 1.49 1.44 -67.71 -0.10 1.40 16 15 H 0.02 0.47 6.72 -51.93 -0.35 0.12 16 16 C -0.13 -2.50 8.20 37.16 0.30 -2.20 16 17 C 0.10 1.67 2.05 -67.72 -0.14 1.53 16 18 H 0.03 0.50 6.42 -51.93 -0.33 0.17 16 19 C -0.11 -1.61 5.10 -26.65 -0.14 -1.75 16 20 C -0.12 -1.44 6.00 -26.61 -0.16 -1.60 16 21 C -0.12 -1.42 6.09 -26.65 -0.16 -1.59 16 22 C 0.06 0.82 6.55 -3.84 -0.03 0.80 16 23 N -0.67 -11.41 5.62 -106.76 -0.60 -12.01 16 24 H 0.04 0.86 6.90 -51.93 -0.36 0.50 16 25 H 0.03 0.51 6.41 -51.93 -0.33 0.17 16 26 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.28 8.17 6.71 -40.82 -0.27 7.90 16 28 H 0.08 1.70 6.92 -51.92 -0.36 1.34 16 29 H 0.04 0.67 6.47 -51.93 -0.34 0.34 16 30 H 0.00 0.07 6.78 -51.93 -0.35 -0.28 16 31 H 0.04 0.69 6.48 -51.93 -0.34 0.35 16 32 H 0.07 1.56 7.53 -51.93 -0.39 1.17 16 33 H 0.05 0.98 6.21 -51.93 -0.32 0.66 16 34 H 0.07 1.07 6.46 -51.93 -0.34 0.73 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.36 7.07 8.17 -39.29 -0.32 6.75 16 LS Contribution 306.43 15.07 4.62 4.62 Total: -1.00 -27.62 306.43 -8.47 -36.10 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.22 Total: 5.49 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: -0.04 Total: -16.35 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.74 Total: -49.72 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.62 -8.47 -36.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.458 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds