Wall clock time and date at job start Mon Mar 30 2020 03:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.47444 * 2 1 4 4 C 1.50699 * 109.47585 * 239.99781 * 2 1 3 5 5 H 1.07999 * 119.99853 * 335.07091 * 4 2 1 6 6 C 1.37879 * 120.00349 * 155.06360 * 4 2 1 7 7 N 1.31512 * 119.99864 * 357.40304 * 6 4 2 8 8 Si 1.86802 * 119.99817 * 177.13264 * 6 4 2 9 9 H 1.48495 * 109.47532 * 60.00388 * 8 6 4 10 10 H 1.48506 * 109.46436 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47192 * 299.99684 * 8 6 4 12 12 N 1.46901 * 109.47212 * 120.00190 * 2 1 3 13 13 C 1.46897 * 111.00220 * 58.94986 * 12 2 1 14 14 C 1.46910 * 110.99631 * 295.00219 * 12 2 1 15 15 H 1.08992 * 109.47178 * 68.54329 * 14 12 2 16 16 C 1.53003 * 109.46760 * 308.54200 * 14 12 2 17 17 C 1.53001 * 109.47009 * 188.54465 * 14 12 2 18 18 H 1.09003 * 109.46415 * 302.81213 * 17 14 12 19 19 C 1.53035 * 109.46237 * 182.82409 * 17 14 12 20 20 C 1.53120 * 109.27809 * 180.80250 * 19 17 14 21 21 C 1.53120 * 109.15865 * 57.65569 * 20 19 17 22 22 C 1.53034 * 109.28372 * 302.34863 * 21 20 19 23 23 N 1.46841 * 109.52302 * 59.17316 * 22 21 20 24 24 H 1.09005 * 109.46748 * 173.29555 * 1 2 3 25 25 H 1.09000 * 109.47351 * 293.29425 * 1 2 3 26 26 H 1.08999 * 109.47249 * 53.30104 * 1 2 3 27 27 H 0.97003 * 119.99647 * 5.91797 * 7 6 4 28 28 H 1.09008 * 109.46444 * 53.95496 * 13 12 2 29 29 H 1.09002 * 109.47098 * 173.94965 * 13 12 2 30 30 H 1.09001 * 109.47472 * 293.95455 * 13 12 2 31 31 H 1.09002 * 109.46785 * 180.02562 * 16 14 12 32 32 H 1.08992 * 109.47380 * 300.00005 * 16 14 12 33 33 H 1.08997 * 109.47243 * 60.00627 * 16 14 12 34 34 H 1.08994 * 109.50623 * 300.74615 * 19 17 14 35 35 H 1.09001 * 109.49976 * 60.86984 * 19 17 14 36 36 H 1.08992 * 109.52119 * 177.56112 * 20 19 17 37 37 H 1.09000 * 109.52730 * 297.75544 * 20 19 17 38 38 H 1.09004 * 109.49873 * 62.28524 * 21 20 19 39 39 H 1.09005 * 109.50369 * 182.40112 * 21 20 19 40 40 H 1.09001 * 109.46679 * 179.19395 * 22 21 20 41 41 H 1.09004 * 109.45822 * 299.17070 * 22 21 20 42 42 H 1.00902 * 110.99799 * 174.16227 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 1.4128 -1.4478 -1.7190 6 6 3.2830 -0.4190 -1.7324 7 7 4.0168 0.5151 -1.1680 8 14 3.9381 -1.3562 -3.2096 9 1 3.0307 -1.1528 -4.3672 10 1 5.2949 -0.8576 -3.5500 11 1 4.0101 -2.8036 -2.8853 12 7 2.0196 -0.6925 1.1994 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0392 2.4181 15 1 0.5690 -0.0128 2.5585 16 6 2.0758 1.5022 2.2844 17 6 2.3505 -0.5890 3.6237 18 1 2.0851 -1.6442 3.6894 19 6 1.9093 0.1284 4.9015 20 6 2.6293 -0.4902 6.1029 21 6 4.1421 -0.3858 5.8905 22 6 4.5187 -1.0882 4.5841 23 7 3.8047 -0.4596 3.4655 24 1 -0.3633 -1.0207 -0.1200 25 1 -0.3634 0.4064 0.9439 26 1 -0.3634 0.6141 -0.8240 27 1 3.7163 0.9390 -0.3489 28 1 1.7844 -2.5840 0.3161 29 1 1.9903 -2.5978 2.0841 30 1 0.4456 -2.0732 1.3722 31 1 1.8009 2.0450 3.1888 32 1 3.1554 1.5542 2.1440 33 1 1.5757 1.9498 1.4256 34 1 2.1623 1.1862 4.8308 35 1 0.8321 0.0188 5.0269 36 1 2.3510 0.0461 7.0100 37 1 2.3463 -1.5386 6.1971 38 1 4.4302 0.6640 5.8353 39 1 4.6602 -0.8627 6.7226 40 1 5.5934 -1.0033 4.4227 41 1 4.2427 -2.1410 4.6452 42 1 4.1079 -0.8422 2.5824 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386563791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:01 Heat of formation + Delta-G solvation = -24.136579 kcal Electronic energy + Delta-G solvation = -19027.230001 eV Core-core repulsion = 16426.795197 eV Total energy + Delta-G solvation = -2600.434804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52522 -38.40381 -34.91633 -33.12606 -32.75379 -30.80000 -29.98678 -26.60681 -25.94984 -25.26884 -24.16265 -22.53630 -20.81556 -19.79991 -18.50239 -17.25352 -16.86464 -16.26505 -15.69639 -15.57855 -15.11291 -14.98158 -14.84065 -14.38203 -13.98103 -13.84743 -13.67505 -13.27774 -13.04406 -12.86581 -12.66285 -12.64459 -12.57292 -12.11842 -12.05820 -11.92200 -11.75536 -11.52482 -11.51003 -11.18701 -11.01111 -10.49711 -10.28888 -9.17427 -8.71325 -8.39664 -6.16104 1.57281 1.63886 1.82810 2.64715 3.14671 3.35771 3.65279 3.90147 4.00015 4.11631 4.19772 4.33772 4.38935 4.44248 4.52236 4.56754 4.61734 4.65340 4.70488 4.75044 4.81860 4.87545 4.91685 4.97353 5.04549 5.10467 5.11725 5.17832 5.25590 5.30588 5.32148 5.48847 5.51087 5.54979 6.02938 6.33054 6.36356 6.56726 6.70050 6.72949 6.95286 7.67874 8.98551 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.007380 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.285688 B = 3793.360535 C = 4189.576555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.187 3.813 3 H 0.031 0.969 4 C -0.596 4.596 5 H 0.034 0.966 6 C -0.011 4.011 7 N -0.925 5.925 8 Si 1.106 2.894 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.532 5.532 13 C 0.047 3.953 14 C 0.082 3.918 15 H 0.028 0.972 16 C -0.122 4.122 17 C 0.107 3.893 18 H 0.023 0.977 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.111 4.111 22 C 0.055 3.945 23 N -0.684 5.684 24 H 0.040 0.960 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.268 0.732 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.013 0.987 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -2.590 13.299 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.082 3.918 3 H 0.049 0.951 4 C -0.635 4.635 5 H 0.052 0.948 6 C -0.213 4.213 7 N -0.561 5.561 8 Si 0.931 3.069 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.256 5.256 13 C -0.102 4.102 14 C -0.026 4.026 15 H 0.046 0.954 16 C -0.180 4.180 17 C -0.003 4.003 18 H 0.041 0.959 19 C -0.150 4.150 20 C -0.152 4.152 21 C -0.149 4.149 22 C -0.074 4.074 23 N -0.316 5.316 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.096 -2.048 12.503 12.717 hybrid contribution -2.309 -0.855 0.529 2.519 sum -3.405 -2.903 13.032 13.778 Atomic orbital electron populations 1.22239 0.99769 1.00102 0.99501 1.19393 0.89397 0.94773 0.88277 0.95142 1.22033 1.03430 1.26082 1.11984 0.94806 1.26844 0.94272 0.95994 1.04224 1.70787 1.41369 1.23675 1.20317 0.83066 0.75664 0.75046 0.73173 1.20280 1.21381 1.20386 1.62614 1.59739 1.01664 1.01626 1.22026 0.96051 0.91409 1.00702 1.21703 0.95542 0.94680 0.90713 0.95396 1.21658 1.01602 0.94688 1.00019 1.21382 0.88386 0.96368 0.94178 0.95907 1.21675 0.99633 1.00406 0.93257 1.21542 0.95216 1.00690 0.97754 1.21561 0.96205 1.01072 0.96042 1.21980 0.98311 0.95171 0.91968 1.60253 1.04328 1.61697 1.05343 0.94046 0.93785 0.93995 0.92082 0.93014 0.92825 0.96907 0.91342 0.92952 0.95047 0.91337 0.91377 0.90283 0.92435 0.91902 0.90145 0.91084 0.96138 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.71 8.42 71.98 0.61 -6.10 16 2 C 0.19 9.16 1.55 44.17 0.07 9.23 16 3 H 0.03 1.66 4.51 -2.39 -0.01 1.65 16 4 C -0.60 -32.72 7.06 25.60 0.18 -32.54 16 5 H 0.03 1.87 7.81 -2.91 -0.02 1.85 16 6 C -0.01 -0.63 5.46 84.66 0.46 -0.17 16 7 N -0.93 -55.53 13.61 21.45 0.29 -55.23 16 8 Si 1.11 50.59 29.90 68.60 2.05 52.64 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 N -0.53 -23.06 3.94 -876.18 -3.45 -26.51 16 13 C 0.05 1.88 8.48 127.69 1.08 2.96 16 14 C 0.08 3.01 1.44 44.91 0.06 3.08 16 15 H 0.03 1.02 6.72 -2.39 -0.02 1.01 16 16 C -0.12 -4.57 8.20 71.98 0.59 -3.98 16 17 C 0.11 3.39 2.05 44.94 0.09 3.48 16 18 H 0.02 0.76 6.42 -2.39 -0.02 0.74 16 19 C -0.11 -2.83 5.10 30.65 0.16 -2.68 16 20 C -0.11 -2.41 6.00 30.67 0.18 -2.22 16 21 C -0.11 -2.43 6.09 30.65 0.19 -2.25 16 22 C 0.06 1.48 6.55 86.33 0.57 2.05 16 23 N -0.68 -22.77 5.62 -491.68 -2.76 -25.53 16 24 H 0.04 1.73 6.90 -2.38 -0.02 1.71 16 25 H 0.04 1.69 6.41 -2.39 -0.02 1.67 16 26 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.27 16.29 6.71 -92.71 -0.62 15.66 16 28 H 0.05 2.32 6.92 -2.38 -0.02 2.30 16 29 H 0.05 1.95 6.47 -2.39 -0.02 1.94 16 30 H 0.01 0.48 6.78 -2.39 -0.02 0.47 16 31 H 0.07 2.15 6.48 -2.39 -0.02 2.14 16 32 H 0.05 2.20 7.53 -2.39 -0.02 2.18 16 33 H 0.03 1.26 6.21 -2.39 -0.01 1.24 16 34 H 0.07 1.82 6.46 -2.39 -0.02 1.80 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.34 13.57 8.17 -89.69 -0.73 12.83 16 Total: -1.00 -59.48 306.43 0.77 -58.71 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.40 Total: 25.08 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 4.24 Total: -29.15 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -5.92 Total: -107.28 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.05 Total: 52.64 kcal Total: -59.48 0.77 -58.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386563791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.569 kcal (2) G-P(sol) polarization free energy of solvation -59.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds