Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.46932 * 2 1 4 4 C 1.47910 * 110.99394 * 184.27840 * 3 2 1 5 5 C 1.53999 * 107.05211 * 145.84630 * 4 3 2 6 6 C 1.54590 * 105.14013 * 358.77094 * 5 4 3 7 7 H 1.09003 * 110.72088 * 96.40551 * 6 5 4 8 8 N 1.46903 * 110.72199 * 219.50896 * 6 5 4 9 9 C 1.46906 * 110.99886 * 271.14900 * 8 6 5 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.46771 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46771 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47000 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00167 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47129 * 120.00094 * 17 15 13 20 20 H 1.48505 * 109.47015 * 239.99816 * 17 15 13 21 21 C 1.48524 * 110.99868 * 301.67100 * 3 2 1 22 22 H 1.08996 * 109.47041 * 305.16484 * 1 2 3 23 23 H 1.09004 * 109.47100 * 65.16148 * 1 2 3 24 24 H 1.09000 * 109.47272 * 185.15782 * 1 2 3 25 25 H 1.08993 * 109.47327 * 239.99695 * 2 1 3 26 26 H 1.09003 * 109.47153 * 119.99584 * 2 1 3 27 27 H 1.08992 * 109.92018 * 26.49251 * 4 3 2 28 28 H 1.09001 * 110.08057 * 265.28607 * 4 3 2 29 29 H 1.08998 * 110.30282 * 239.85197 * 5 4 3 30 30 H 1.08999 * 110.30740 * 117.69570 * 5 4 3 31 31 H 1.00897 * 110.99840 * 147.20042 * 8 6 5 32 32 H 1.08998 * 109.47062 * 300.00307 * 9 8 6 33 33 H 1.09004 * 109.46948 * 60.00099 * 9 8 6 34 34 H 1.09001 * 109.47148 * 299.99668 * 10 9 8 35 35 H 1.08995 * 109.47115 * 60.00192 * 10 9 8 36 36 H 1.08998 * 109.47084 * 300.00217 * 11 10 9 37 37 H 1.09004 * 109.47096 * 60.00113 * 11 10 9 38 38 H 1.09001 * 109.47148 * 299.99591 * 12 11 10 39 39 H 1.08995 * 109.47115 * 60.00115 * 12 11 10 40 40 H 0.97002 * 119.99566 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.66739 * 81.85449 * 21 3 2 42 42 H 1.09002 * 110.67303 * 318.71430 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4946 1.4257 -0.1030 5 6 3.8555 2.6762 -0.9262 6 6 2.4998 3.3155 -1.3048 7 1 2.2395 4.1101 -0.6056 8 7 2.5328 3.8271 -2.6814 9 6 3.0138 5.2148 -2.7159 10 6 3.0348 5.7114 -4.1630 11 6 3.5363 7.1565 -4.1989 12 6 3.5579 7.6529 -5.6460 13 6 4.0524 9.0760 -5.6815 14 1 4.3237 9.5764 -4.7638 15 6 4.1575 9.7394 -6.8856 16 7 3.8267 9.1301 -8.0031 17 14 4.7699 11.5037 -6.9295 18 1 5.0733 11.9569 -5.5484 19 1 6.0002 11.5801 -7.7576 20 1 3.7223 12.3767 -7.5176 21 6 1.5106 2.1295 -1.1801 22 1 -0.3633 0.5918 0.8401 23 1 -0.3633 0.4317 -0.9326 24 1 -0.3634 -1.0235 0.0924 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8563 0.5308 -0.6092 28 1 3.9374 1.4947 0.8906 29 1 4.4040 2.3924 -1.8243 30 1 4.4452 3.3679 -0.3246 31 1 1.6270 3.7474 -3.1186 32 1 2.3489 5.8445 -2.1248 33 1 4.0210 5.2606 -2.3018 34 1 3.7000 5.0815 -4.7536 35 1 2.0278 5.6655 -4.5775 36 1 2.8715 7.7866 -3.6081 37 1 4.5434 7.2020 -3.7845 38 1 4.2230 7.0227 -6.2364 39 1 2.5510 7.6073 -6.0608 40 1 3.9010 9.5968 -8.8502 41 1 0.4981 2.4906 -0.9998 42 1 1.5443 1.5050 -2.0729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389318818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = -21.698649 kcal Electronic energy + Delta-G solvation = -16852.236516 eV Core-core repulsion = 14251.907429 eV Total energy + Delta-G solvation = -2600.329088 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.44632 -36.39398 -34.30815 -32.84140 -31.69388 -29.12998 -28.65729 -27.01871 -24.20745 -23.00145 -21.60263 -20.76351 -20.48808 -19.84930 -16.49985 -16.36418 -16.07953 -15.25835 -15.15978 -14.45647 -14.17647 -14.09817 -13.73522 -13.43931 -12.92208 -12.57678 -12.39341 -12.11122 -11.80281 -11.68613 -11.54142 -11.32552 -11.20009 -11.11105 -11.00282 -10.77090 -10.50037 -10.44251 -10.39951 -9.61070 -9.23678 -8.97347 -8.70698 -8.42073 -8.31272 -5.96404 -3.98429 3.32870 3.40101 3.44553 3.61074 4.27937 4.40213 4.49263 4.54048 4.82567 4.89887 5.02805 5.09413 5.17754 5.30851 5.38969 5.39964 5.49076 5.50908 5.53445 5.62584 5.71129 5.74587 5.84926 5.92971 5.94736 6.01488 6.18310 6.28500 6.53464 6.58780 6.75386 6.84819 6.98989 7.08391 7.25664 7.41107 7.73238 7.88971 8.05023 8.47966 9.09415 9.65423 11.15043 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.067612 B = 0.002959 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.028651 B = 9459.222282 C = 9640.306603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 N -0.518 5.518 4 C 0.037 3.963 5 C -0.123 4.123 6 C 0.081 3.919 7 H 0.057 0.943 8 N -0.684 5.684 9 C 0.061 3.939 10 C -0.116 4.116 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.035 3.965 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.340 0.660 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.047 0.953 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.080 0.920 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -17.567 15.743 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 N -0.243 5.243 4 C -0.091 4.091 5 C -0.161 4.161 6 C -0.030 4.030 7 H 0.075 0.925 8 N -0.315 5.315 9 C -0.068 4.068 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.094 4.094 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.158 0.842 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.208 -17.589 15.920 24.094 hybrid contribution -0.151 1.036 -0.545 1.180 sum -4.358 -16.553 15.375 23.008 Atomic orbital electron populations 1.21812 0.94779 1.01811 1.02484 1.22257 0.96208 0.89342 1.00815 1.64778 1.06855 1.13178 1.39464 1.22854 0.88216 0.97748 1.00288 1.22462 0.97486 0.96218 0.99967 1.22408 0.94847 0.95701 0.90039 0.92460 1.60588 1.32625 1.22105 1.16183 1.22114 0.99836 0.86456 0.98406 1.21641 1.01432 0.98067 0.94209 1.21589 0.99314 0.92766 1.01020 1.19097 0.97067 0.95594 0.89895 1.21333 1.43349 0.98300 0.92735 0.92721 1.25041 0.95658 0.98109 0.95799 1.69983 1.48862 1.36970 0.97790 0.86554 0.78472 0.85055 0.78028 1.19767 1.21022 1.21048 1.23341 0.98680 0.95073 0.92277 0.91755 0.92655 0.92240 0.94696 0.90732 0.93721 0.90477 0.90099 0.91339 0.84165 0.95448 0.91275 0.91701 0.92754 0.93674 0.93455 0.96617 0.96737 0.93117 0.90192 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.59 37.16 0.36 -0.72 16 2 C 0.04 0.34 5.56 -3.82 -0.02 0.32 16 3 N -0.52 -5.04 5.35 -230.45 -1.23 -6.27 16 4 C 0.04 0.35 6.70 -2.75 -0.02 0.33 16 5 C -0.12 -1.29 6.65 -25.37 -0.17 -1.46 16 6 C 0.08 0.90 3.36 -65.85 -0.22 0.68 16 7 H 0.06 0.68 7.86 -51.93 -0.41 0.27 16 8 N -0.68 -8.54 6.32 -104.76 -0.66 -9.20 16 9 C 0.06 0.87 5.55 -3.82 -0.02 0.85 16 10 C -0.12 -1.99 5.48 -26.73 -0.15 -2.14 16 11 C -0.11 -2.28 5.15 -26.73 -0.14 -2.41 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.05 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.75 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 C 0.03 0.34 4.78 -1.90 -0.01 0.33 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.29 7.97 -51.93 -0.41 -0.13 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.40 7.67 -51.93 -0.40 0.00 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.34 3.95 8.47 -39.29 -0.33 3.62 16 32 H 0.03 0.39 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.08 0.75 7.77 -51.93 -0.40 0.34 16 42 H 0.05 0.56 8.02 -51.93 -0.42 0.14 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -30.33 333.00 -10.30 -40.62 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -8.20 Total: -2.72 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.94 Total: -17.69 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -1.16 Total: -42.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.33 -10.30 -40.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389318818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.926 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds