Wall clock time and date at job start Mon Mar 30 2020 03:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46906 * 109.46932 * 2 1 4 4 C 1.47910 * 110.99394 * 184.27840 * 3 2 1 5 5 C 1.53999 * 107.05211 * 145.84630 * 4 3 2 6 6 C 1.54590 * 105.14013 * 358.77094 * 5 4 3 7 7 H 1.09003 * 110.72088 * 96.40551 * 6 5 4 8 8 N 1.46903 * 110.72199 * 219.50896 * 6 5 4 9 9 C 1.46906 * 110.99886 * 271.14900 * 8 6 5 10 10 C 1.53001 * 109.46941 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.46771 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46771 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47000 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00044 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00167 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47312 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47129 * 120.00094 * 17 15 13 20 20 H 1.48505 * 109.47015 * 239.99816 * 17 15 13 21 21 C 1.48524 * 110.99868 * 301.67100 * 3 2 1 22 22 H 1.08996 * 109.47041 * 305.16484 * 1 2 3 23 23 H 1.09004 * 109.47100 * 65.16148 * 1 2 3 24 24 H 1.09000 * 109.47272 * 185.15782 * 1 2 3 25 25 H 1.08993 * 109.47327 * 239.99695 * 2 1 3 26 26 H 1.09003 * 109.47153 * 119.99584 * 2 1 3 27 27 H 1.08992 * 109.92018 * 26.49251 * 4 3 2 28 28 H 1.09001 * 110.08057 * 265.28607 * 4 3 2 29 29 H 1.08998 * 110.30282 * 239.85197 * 5 4 3 30 30 H 1.08999 * 110.30740 * 117.69570 * 5 4 3 31 31 H 1.00897 * 110.99840 * 147.20042 * 8 6 5 32 32 H 1.08998 * 109.47062 * 300.00307 * 9 8 6 33 33 H 1.09004 * 109.46948 * 60.00099 * 9 8 6 34 34 H 1.09001 * 109.47148 * 299.99668 * 10 9 8 35 35 H 1.08995 * 109.47115 * 60.00192 * 10 9 8 36 36 H 1.08998 * 109.47084 * 300.00217 * 11 10 9 37 37 H 1.09004 * 109.47096 * 60.00113 * 11 10 9 38 38 H 1.09001 * 109.47148 * 299.99591 * 12 11 10 39 39 H 1.08995 * 109.47115 * 60.00115 * 12 11 10 40 40 H 0.97002 * 119.99566 * 180.02562 * 16 15 13 41 41 H 1.09001 * 110.66739 * 81.85449 * 21 3 2 42 42 H 1.09002 * 110.67303 * 318.71430 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4946 1.4257 -0.1030 5 6 3.8555 2.6762 -0.9262 6 6 2.4998 3.3155 -1.3048 7 1 2.2395 4.1101 -0.6056 8 7 2.5328 3.8271 -2.6814 9 6 3.0138 5.2148 -2.7159 10 6 3.0348 5.7114 -4.1630 11 6 3.5363 7.1565 -4.1989 12 6 3.5579 7.6529 -5.6460 13 6 4.0524 9.0760 -5.6815 14 1 4.3237 9.5764 -4.7638 15 6 4.1575 9.7394 -6.8856 16 7 3.8267 9.1301 -8.0031 17 14 4.7699 11.5037 -6.9295 18 1 5.0733 11.9569 -5.5484 19 1 6.0002 11.5801 -7.7576 20 1 3.7223 12.3767 -7.5176 21 6 1.5106 2.1295 -1.1801 22 1 -0.3633 0.5918 0.8401 23 1 -0.3633 0.4317 -0.9326 24 1 -0.3634 -1.0235 0.0924 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8563 0.5308 -0.6092 28 1 3.9374 1.4947 0.8906 29 1 4.4040 2.3924 -1.8243 30 1 4.4452 3.3679 -0.3246 31 1 1.6270 3.7474 -3.1186 32 1 2.3489 5.8445 -2.1248 33 1 4.0210 5.2606 -2.3018 34 1 3.7000 5.0815 -4.7536 35 1 2.0278 5.6655 -4.5775 36 1 2.8715 7.7866 -3.6081 37 1 4.5434 7.2020 -3.7845 38 1 4.2230 7.0227 -6.2364 39 1 2.5510 7.6073 -6.0608 40 1 3.9010 9.5968 -8.8502 41 1 0.4981 2.4906 -0.9998 42 1 1.5443 1.5050 -2.0729 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389318818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:37 Heat of formation + Delta-G solvation = -41.706830 kcal Electronic energy + Delta-G solvation = -16853.104136 eV Core-core repulsion = 14251.907429 eV Total energy + Delta-G solvation = -2601.196707 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.24582 -37.59401 -35.89493 -34.35362 -33.01564 -30.49846 -29.40896 -28.37063 -25.94158 -23.73889 -23.07232 -21.91194 -21.46660 -21.14035 -18.44259 -17.36510 -17.05649 -16.58402 -16.41205 -15.97156 -15.35584 -14.89989 -14.74697 -14.53869 -14.19244 -14.01862 -13.62796 -13.43190 -13.17187 -12.88916 -12.64131 -12.55106 -12.30103 -12.22549 -12.15024 -12.13712 -11.99991 -11.80434 -11.56056 -11.36533 -11.29394 -10.96638 -10.56190 -9.44465 -9.41998 -8.20327 -6.31690 1.39472 1.39884 1.53501 2.40706 2.81723 3.12471 3.36974 3.59743 3.76558 4.11300 4.11917 4.19700 4.27163 4.29599 4.35742 4.50418 4.56202 4.60780 4.64376 4.67216 4.84494 4.87971 4.92471 4.94177 4.95433 5.05790 5.15512 5.17412 5.24856 5.27770 5.31839 5.36442 5.55334 5.78055 5.82155 5.87142 6.04455 6.14043 6.25842 6.44137 6.86189 7.37709 8.91849 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.067612 B = 0.002959 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.028651 B = 9459.222282 C = 9640.306603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.040 3.960 3 N -0.527 5.527 4 C 0.040 3.960 5 C -0.122 4.122 6 C 0.080 3.920 7 H 0.053 0.947 8 N -0.686 5.686 9 C 0.074 3.926 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C 0.042 3.958 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.346 0.654 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.050 0.950 38 H -0.011 1.011 39 H -0.010 1.010 40 H 0.264 0.736 41 H 0.085 0.915 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -17.527 17.110 24.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 N -0.252 5.252 4 C -0.088 4.088 5 C -0.161 4.161 6 C -0.030 4.030 7 H 0.071 0.929 8 N -0.318 5.318 9 C -0.056 4.056 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.087 4.087 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.007 0.993 39 H 0.008 0.992 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.223 -17.565 17.304 25.016 hybrid contribution -0.160 0.975 -0.987 1.397 sum -4.383 -16.590 16.317 23.678 Atomic orbital electron populations 1.21788 0.94071 1.02605 1.02073 1.22326 0.96813 0.88467 1.01163 1.64811 1.06985 1.14197 1.39227 1.22846 0.88214 0.97245 1.00537 1.22442 0.97072 0.96820 0.99737 1.22424 0.95685 0.95993 0.88900 0.92881 1.60529 1.33139 1.20815 1.17343 1.21866 1.00181 0.87558 0.95953 1.21462 1.00907 0.95540 0.96384 1.21397 0.99911 0.95049 0.97149 1.19027 0.94721 0.94738 0.92982 1.21777 1.43640 0.99550 0.93195 0.92225 1.26030 0.95647 1.03130 0.95313 1.70114 1.49774 1.39113 0.98543 0.85376 0.78007 0.78933 0.78592 1.18549 1.20299 1.20273 1.23261 0.98568 0.94492 0.92351 0.92204 0.92995 0.90869 0.94766 0.89922 0.93317 0.89680 0.91186 0.91143 0.83550 0.94861 0.91301 0.92670 0.92699 0.93114 0.93155 0.99268 0.99156 0.92767 0.89652 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.59 71.98 0.69 -1.17 16 2 C 0.04 0.58 5.56 86.30 0.48 1.06 16 3 N -0.53 -9.40 5.35 -883.01 -4.73 -14.12 16 4 C 0.04 0.68 6.70 86.45 0.58 1.26 16 5 C -0.12 -2.42 6.65 31.47 0.21 -2.21 16 6 C 0.08 1.68 3.36 46.12 0.16 1.83 16 7 H 0.05 1.18 7.86 -2.39 -0.02 1.16 16 8 N -0.69 -16.34 6.32 -485.35 -3.07 -19.41 16 9 C 0.07 2.01 5.55 86.30 0.48 2.49 16 10 C -0.10 -3.58 5.48 30.60 0.17 -3.41 16 11 C -0.10 -4.05 5.15 30.60 0.16 -3.89 16 12 C 0.02 1.22 4.97 29.85 0.15 1.37 16 13 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 16 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 17 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 18 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 C 0.04 0.76 4.78 86.65 0.41 1.17 16 22 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.05 0.68 7.18 -2.39 -0.02 0.66 16 24 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.03 0.50 7.97 -2.39 -0.02 0.49 16 26 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 0.79 7.67 -2.39 -0.02 0.78 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.35 7.61 8.47 -89.70 -0.76 6.85 16 32 H 0.03 0.88 8.08 -2.39 -0.02 0.86 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.84 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 38 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.09 1.46 7.77 -2.39 -0.02 1.45 16 42 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 Total: -1.00 -64.39 333.00 -1.12 -65.51 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.19 Total: 11.69 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 4.18 Total: -32.82 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -7.51 Total: -91.40 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -64.39 -1.12 -65.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389318818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.803 kcal (2) G-P(sol) polarization free energy of solvation -64.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds