Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47056 * 2 1 4 4 C 1.48562 * 110.99876 * 290.12169 * 3 2 1 5 5 C 1.54376 * 104.59524 * 200.96016 * 4 3 2 6 6 C 1.54261 * 105.06129 * 23.85221 * 5 4 3 7 7 H 1.08998 * 110.32508 * 240.99950 * 6 5 4 8 8 N 1.46906 * 110.32492 * 118.89437 * 6 5 4 9 9 C 1.46901 * 110.99793 * 87.82827 * 8 6 5 10 10 C 1.53000 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.48721 * 111.01843 * 174.61360 * 3 2 1 22 22 H 1.09008 * 109.46904 * 60.00136 * 1 2 3 23 23 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47740 * 300.00526 * 1 2 3 25 25 H 1.08994 * 109.47041 * 239.99587 * 2 1 3 26 26 H 1.09003 * 109.46653 * 119.99172 * 2 1 3 27 27 H 1.08999 * 110.41334 * 82.18195 * 4 3 2 28 28 H 1.08993 * 110.41088 * 319.74045 * 4 3 2 29 29 H 1.08999 * 110.33017 * 264.96076 * 5 4 3 30 30 H 1.09007 * 110.41202 * 142.79182 * 5 4 3 31 31 H 1.00899 * 110.99995 * 211.78429 * 8 6 5 32 32 H 1.09001 * 109.46874 * 60.00179 * 9 8 6 33 33 H 1.08992 * 109.47407 * 300.00197 * 9 8 6 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 38 38 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 39 39 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 40 40 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.38799 * 40.23817 * 21 3 2 42 42 H 1.09003 * 110.50941 * 277.75531 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7473 2.0459 -1.3023 5 6 2.7453 3.2224 -1.3577 6 6 3.8978 2.8150 -0.4168 7 1 3.9913 3.5312 0.3995 8 7 5.1596 2.7268 -1.1639 9 6 5.8367 4.0297 -1.2093 10 6 7.1440 3.8979 -1.9932 11 6 7.8495 5.2547 -2.0400 12 6 9.1564 5.1232 -2.8244 13 6 9.8511 6.4598 -2.8710 14 1 9.4052 7.3172 -2.3889 15 6 11.0564 6.5878 -3.5281 16 7 11.5997 5.5436 -4.1148 17 14 11.9171 8.2447 -3.5864 18 1 12.8240 8.3727 -2.4175 19 1 12.7071 8.3483 -4.8395 20 1 10.9044 9.3302 -3.5485 21 6 3.5005 1.4272 0.1303 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 0.7222 2.4152 -1.3342 28 1 1.9288 1.3543 -2.1249 29 1 2.2720 4.1376 -1.0022 30 1 3.1162 3.3587 -2.3737 31 1 5.7629 2.0191 -0.7724 32 1 6.0541 4.3616 -0.1941 33 1 5.1906 4.7580 -1.6992 34 1 7.7899 3.1696 -1.5029 35 1 6.9270 3.5658 -3.0085 36 1 7.2038 5.9834 -2.5301 37 1 8.0666 5.5866 -1.0247 38 1 9.8024 4.3945 -2.3347 39 1 8.9390 4.7917 -3.8397 40 1 12.4474 5.6337 -4.5774 41 1 3.9570 0.6380 -0.4673 42 1 3.7948 1.3320 1.1756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389318819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = -21.163495 kcal Electronic energy + Delta-G solvation = -16828.200977 eV Core-core repulsion = 14227.895095 eV Total energy + Delta-G solvation = -2600.305882 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.41381 -36.39395 -34.33236 -32.78112 -31.54199 -29.40691 -28.74958 -26.65117 -24.08211 -23.34032 -21.54461 -20.99803 -20.27145 -19.75369 -16.55530 -16.31479 -16.08612 -15.33864 -14.86382 -14.74547 -14.40136 -13.91794 -13.68578 -13.23030 -12.88210 -12.64239 -12.36856 -11.98103 -11.78818 -11.70468 -11.54574 -11.37787 -11.22338 -11.07866 -10.97791 -10.78781 -10.51095 -10.46409 -10.39967 -9.61101 -9.23831 -8.98678 -8.76657 -8.41334 -8.31018 -5.96327 -3.98469 3.33752 3.39754 3.43432 3.64194 4.30285 4.39830 4.49319 4.53124 4.82742 4.94548 5.06230 5.11963 5.19363 5.33316 5.38290 5.39198 5.48338 5.51287 5.54482 5.62236 5.72521 5.75672 5.87883 5.91055 5.94069 6.03344 6.17789 6.26771 6.52716 6.55778 6.75284 6.84471 6.98676 7.08552 7.25588 7.41196 7.72787 7.88739 8.04910 8.47785 9.09098 9.65285 11.15055 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.082068 B = 0.002892 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.099161 B = 9678.401816 C = 9787.412482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.039 3.961 3 N -0.512 5.512 4 C 0.036 3.964 5 C -0.117 4.117 6 C 0.081 3.919 7 H 0.054 0.946 8 N -0.685 5.685 9 C 0.060 3.940 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.030 3.970 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.339 0.661 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.054 0.946 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.241 -10.134 8.154 24.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 N -0.237 5.237 4 C -0.092 4.092 5 C -0.155 4.155 6 C -0.029 4.029 7 H 0.072 0.928 8 N -0.317 5.317 9 C -0.069 4.069 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.098 4.098 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.158 0.842 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.673 -9.848 7.888 24.219 hybrid contribution 1.331 0.466 0.168 1.420 sum -19.342 -9.383 8.056 22.957 Atomic orbital electron populations 1.21740 0.94710 1.01471 1.02491 1.22237 0.96391 0.89450 1.00888 1.65426 1.11020 1.15719 1.31490 1.23104 0.99850 0.96089 0.90183 1.22391 0.94672 0.97485 1.00981 1.22232 0.90710 0.95753 0.94234 0.92811 1.60696 1.06008 1.08598 1.56386 1.22114 0.95947 0.90144 0.98664 1.21639 0.94051 0.99452 1.00191 1.21585 0.98697 0.94143 1.00264 1.19092 0.90645 0.96845 0.95043 1.21294 1.05122 0.95687 1.33687 0.92773 1.25042 0.97437 0.96542 0.95574 1.69971 1.18507 1.29320 1.35800 0.86605 0.79643 0.84423 0.77392 1.20710 1.21236 1.19900 1.23290 0.88570 0.96939 1.00989 0.92720 0.92376 0.91901 0.94577 0.90886 0.90370 0.93651 0.91424 0.89898 0.84249 0.95474 0.91243 0.92784 0.91709 0.93448 0.93682 0.96759 0.96618 0.93061 0.92744 0.90243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.97 37.16 0.37 -0.66 16 2 C 0.04 0.32 5.53 -3.82 -0.02 0.30 16 3 N -0.51 -5.02 5.37 -229.84 -1.23 -6.25 16 4 C 0.04 0.34 5.74 -2.18 -0.01 0.33 16 5 C -0.12 -1.24 6.75 -25.35 -0.17 -1.41 16 6 C 0.08 0.90 3.38 -66.33 -0.22 0.67 16 7 H 0.05 0.62 7.84 -51.93 -0.41 0.22 16 8 N -0.69 -8.53 6.19 -105.27 -0.65 -9.18 16 9 C 0.06 0.85 5.53 -3.82 -0.02 0.83 16 10 C -0.12 -1.99 5.47 -26.73 -0.15 -2.13 16 11 C -0.11 -2.27 5.15 -26.74 -0.14 -2.41 16 12 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.03 0.30 5.95 -2.09 -0.01 0.29 16 22 H 0.05 0.39 7.26 -51.92 -0.38 0.01 16 23 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.30 7.88 -51.93 -0.41 -0.11 16 26 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 27 H 0.08 0.68 7.76 -51.93 -0.40 0.28 16 28 H 0.05 0.45 7.82 -51.93 -0.41 0.04 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.96 7.95 -51.92 -0.41 0.55 16 31 H 0.34 3.94 8.37 -39.29 -0.33 3.62 16 32 H 0.03 0.38 8.07 -51.93 -0.42 -0.04 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.05 0.54 7.84 -51.93 -0.41 0.14 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 333.25 15.07 5.02 5.02 Total: -1.00 -30.28 333.25 -10.26 -40.54 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.18 Total: -2.72 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -0.93 Total: -17.65 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: -1.15 Total: -42.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.28 -10.26 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389318819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.378 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds