Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47056 * 2 1 4 4 C 1.48562 * 110.99876 * 290.12169 * 3 2 1 5 5 C 1.54376 * 104.59524 * 200.96016 * 4 3 2 6 6 C 1.54261 * 105.06129 * 23.85221 * 5 4 3 7 7 H 1.08998 * 110.32508 * 240.99950 * 6 5 4 8 8 N 1.46906 * 110.32492 * 118.89437 * 6 5 4 9 9 C 1.46901 * 110.99793 * 87.82827 * 8 6 5 10 10 C 1.53000 * 109.46769 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47592 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00057 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00356 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99989 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00117 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46744 * 90.00434 * 17 15 13 19 19 H 1.48500 * 109.47304 * 210.00023 * 17 15 13 20 20 H 1.48498 * 109.47341 * 330.00626 * 17 15 13 21 21 C 1.48721 * 111.01843 * 174.61360 * 3 2 1 22 22 H 1.09008 * 109.46904 * 60.00136 * 1 2 3 23 23 H 1.09001 * 109.47422 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47740 * 300.00526 * 1 2 3 25 25 H 1.08994 * 109.47041 * 239.99587 * 2 1 3 26 26 H 1.09003 * 109.46653 * 119.99172 * 2 1 3 27 27 H 1.08999 * 110.41334 * 82.18195 * 4 3 2 28 28 H 1.08993 * 110.41088 * 319.74045 * 4 3 2 29 29 H 1.08999 * 110.33017 * 264.96076 * 5 4 3 30 30 H 1.09007 * 110.41202 * 142.79182 * 5 4 3 31 31 H 1.00899 * 110.99995 * 211.78429 * 8 6 5 32 32 H 1.09001 * 109.46874 * 60.00179 * 9 8 6 33 33 H 1.08992 * 109.47407 * 300.00197 * 9 8 6 34 34 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 35 35 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 36 36 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 37 37 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 38 38 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 39 39 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 40 40 H 0.96996 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.09004 * 110.38799 * 40.23817 * 21 3 2 42 42 H 1.09003 * 110.50941 * 277.75531 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7473 2.0459 -1.3023 5 6 2.7453 3.2224 -1.3577 6 6 3.8978 2.8150 -0.4168 7 1 3.9913 3.5312 0.3995 8 7 5.1596 2.7268 -1.1639 9 6 5.8367 4.0297 -1.2093 10 6 7.1440 3.8979 -1.9932 11 6 7.8495 5.2547 -2.0400 12 6 9.1564 5.1232 -2.8244 13 6 9.8511 6.4598 -2.8710 14 1 9.4052 7.3172 -2.3889 15 6 11.0564 6.5878 -3.5281 16 7 11.5997 5.5436 -4.1148 17 14 11.9171 8.2447 -3.5864 18 1 12.8240 8.3727 -2.4175 19 1 12.7071 8.3483 -4.8395 20 1 10.9044 9.3302 -3.5485 21 6 3.5005 1.4272 0.1303 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 0.7222 2.4152 -1.3342 28 1 1.9288 1.3543 -2.1249 29 1 2.2720 4.1376 -1.0022 30 1 3.1162 3.3587 -2.3737 31 1 5.7629 2.0191 -0.7724 32 1 6.0541 4.3616 -0.1941 33 1 5.1906 4.7580 -1.6992 34 1 7.7899 3.1696 -1.5029 35 1 6.9270 3.5658 -3.0085 36 1 7.2038 5.9834 -2.5301 37 1 8.0666 5.5866 -1.0247 38 1 9.8024 4.3945 -2.3347 39 1 8.9390 4.7917 -3.8397 40 1 12.4474 5.6337 -4.5774 41 1 3.9570 0.6380 -0.4673 42 1 3.7948 1.3320 1.1756 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389318819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = -41.073558 kcal Electronic energy + Delta-G solvation = -16829.064342 eV Core-core repulsion = 14227.895095 eV Total energy + Delta-G solvation = -2601.169247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22347 -37.58290 -35.91076 -34.35995 -32.85397 -30.30388 -30.06033 -27.94437 -25.79969 -24.05375 -22.96923 -22.06293 -21.55801 -20.84908 -18.43737 -17.43424 -17.00127 -16.59061 -16.39741 -15.85174 -15.59684 -14.96096 -14.77688 -14.37520 -14.15510 -13.86904 -13.58774 -13.44549 -13.18833 -12.85802 -12.56031 -12.48929 -12.38326 -12.28243 -12.13163 -12.12383 -12.02827 -11.82226 -11.55356 -11.37081 -11.30171 -10.96920 -10.55635 -9.51417 -9.41015 -8.20181 -6.31674 1.39341 1.41124 1.52363 2.40706 2.84813 3.12449 3.37312 3.59372 3.76522 4.11099 4.12806 4.19738 4.26492 4.34000 4.40054 4.51192 4.56974 4.61701 4.63797 4.67607 4.84400 4.89024 4.92497 4.93824 4.98755 5.04672 5.15053 5.15340 5.24486 5.28141 5.34036 5.36082 5.55016 5.77145 5.77865 5.86878 6.04016 6.14197 6.25678 6.44775 6.85959 7.37628 8.91738 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.082068 B = 0.002892 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.099161 B = 9678.401816 C = 9787.412482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.037 3.963 3 N -0.520 5.520 4 C 0.040 3.960 5 C -0.117 4.117 6 C 0.081 3.919 7 H 0.052 0.948 8 N -0.688 5.688 9 C 0.073 3.927 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.023 3.977 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.263 1.263 21 C 0.035 3.965 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.345 0.655 32 H 0.033 0.967 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.050 0.950 38 H -0.010 1.010 39 H -0.011 1.011 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.180 -9.599 9.043 24.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.091 4.091 3 N -0.245 5.245 4 C -0.088 4.088 5 C -0.155 4.155 6 C -0.029 4.029 7 H 0.070 0.930 8 N -0.320 5.320 9 C -0.056 4.056 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.093 4.093 22 H 0.071 0.929 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.052 0.948 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.008 0.992 39 H 0.007 0.993 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.631 -9.322 8.788 25.140 hybrid contribution 1.615 0.246 -0.119 1.638 sum -20.016 -9.076 8.669 23.626 Atomic orbital electron populations 1.21713 0.93773 1.02315 1.02208 1.22308 0.97170 0.88590 1.01082 1.65459 1.10807 1.16749 1.31440 1.23073 1.00046 0.95603 0.90114 1.22379 0.94822 0.98190 1.00153 1.22255 0.89964 0.96577 0.94096 0.93005 1.60637 1.06509 1.07763 1.57138 1.21866 0.94300 0.91145 0.98297 1.21458 0.95405 0.97117 1.00289 1.21393 0.96207 0.96458 0.99436 1.19025 0.92945 0.95366 0.94127 1.21748 1.05835 0.96730 1.33940 0.92196 1.26037 0.98300 1.00855 0.94949 1.70107 1.19070 1.31839 1.36497 0.85422 0.78487 0.79272 0.77718 1.19670 1.20685 1.18704 1.23246 0.88796 0.95990 1.01314 0.92893 0.91027 0.92230 0.94768 0.90289 0.89447 0.94013 0.90971 0.91088 0.83648 0.94841 0.91254 0.92761 0.92711 0.93148 0.93096 0.99196 0.99289 0.92770 0.92921 0.89462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.97 71.98 0.72 -1.03 16 2 C 0.04 0.54 5.53 86.30 0.48 1.02 16 3 N -0.52 -9.35 5.37 -881.07 -4.73 -14.08 16 4 C 0.04 0.71 5.74 86.45 0.50 1.20 16 5 C -0.12 -2.34 6.75 31.49 0.21 -2.13 16 6 C 0.08 1.68 3.38 45.81 0.15 1.84 16 7 H 0.05 1.11 7.84 -2.39 -0.02 1.09 16 8 N -0.69 -16.32 6.19 -486.96 -3.01 -19.33 16 9 C 0.07 1.99 5.53 86.30 0.48 2.46 16 10 C -0.10 -3.57 5.47 30.59 0.17 -3.40 16 11 C -0.10 -4.04 5.15 30.59 0.16 -3.88 16 12 C 0.02 1.22 4.97 29.84 0.15 1.37 16 13 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 14 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 16 N -0.93 -58.15 13.29 21.45 0.28 -57.86 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 C 0.03 0.63 5.95 86.42 0.51 1.15 16 22 H 0.05 0.67 7.26 -2.38 -0.02 0.65 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.03 0.52 7.88 -2.39 -0.02 0.50 16 26 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 27 H 0.09 1.39 7.76 -2.39 -0.02 1.37 16 28 H 0.04 0.77 7.82 -2.39 -0.02 0.75 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.60 7.95 -2.38 -0.02 1.58 16 31 H 0.34 7.57 8.37 -89.69 -0.75 6.82 16 32 H 0.03 0.88 8.07 -2.39 -0.02 0.86 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 39 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.05 0.98 7.84 -2.38 -0.02 0.96 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -64.34 333.25 -1.02 -65.36 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.19 Total: 11.70 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 4.22 Total: -32.78 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -7.46 Total: -91.27 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.34 -1.02 -65.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389318819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.284 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds