Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.53001 * 109.47508 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47582 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00237 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00021 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00069 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46938 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47245 * 119.99812 * 11 9 7 14 14 H 1.48504 * 109.46799 * 239.99857 * 11 9 7 15 15 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 16 16 H 1.09000 * 109.50296 * 299.91488 * 15 2 1 17 17 C 1.53117 * 109.50653 * 59.99985 * 15 2 1 18 18 C 1.53111 * 109.16166 * 177.59159 * 17 15 2 19 19 C 1.53035 * 109.28231 * 302.34531 * 18 17 15 20 20 N 1.46845 * 109.52086 * 59.17899 * 19 18 17 21 21 C 1.46898 * 111.00201 * 174.16134 * 20 19 18 22 22 C 1.46851 * 111.20054 * 298.25650 * 20 19 18 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 27 27 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 28 28 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 29 29 H 1.08998 * 109.46853 * 300.00345 * 6 5 4 30 30 H 1.09007 * 109.46934 * 59.99579 * 6 5 4 31 31 H 0.97005 * 120.00338 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.52007 * 297.50458 * 17 15 2 33 33 H 1.09000 * 109.51940 * 57.68506 * 17 15 2 34 34 H 1.09004 * 109.50006 * 62.28933 * 18 17 15 35 35 H 1.09001 * 109.50321 * 182.36394 * 18 17 15 36 36 H 1.09004 * 109.46319 * 179.19111 * 19 18 17 37 37 H 1.08996 * 109.46308 * 299.17695 * 19 18 17 38 38 H 1.09009 * 109.47085 * 63.95271 * 21 20 19 39 39 H 1.09000 * 109.47919 * 183.95356 * 21 20 19 40 40 H 1.09001 * 109.47189 * 303.95492 * 21 20 19 41 41 H 1.08995 * 109.46189 * 301.73242 * 22 20 19 42 42 H 1.09003 * 109.46298 * 181.75550 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5951 -0.5332 3.5745 7 6 2.6589 0.4053 4.7518 8 1 2.3630 1.4376 4.6361 9 6 3.0951 -0.0537 5.9765 10 7 3.4549 -1.3108 6.1175 11 14 3.1735 1.1095 7.4360 12 1 2.7175 2.4595 7.0180 13 1 2.2943 0.6032 8.5204 14 1 4.5718 1.1907 7.9296 15 6 2.0399 -0.7212 -1.2493 16 1 1.6781 -1.7494 -1.2491 17 6 1.5299 0.0000 -2.5000 18 6 2.0936 -0.6919 -3.7441 19 6 3.6224 -0.6889 -3.6751 20 7 4.0602 -1.3910 -2.4619 21 6 5.5224 -1.5288 -2.4321 22 6 3.5703 -0.7173 -1.2525 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1205 1.0286 27 1 2.7589 1.0461 2.1182 28 1 1.0870 0.6162 2.5525 29 1 1.9184 -1.3566 3.8029 30 1 3.5904 -0.9273 3.3690 31 1 3.7614 -1.6339 6.9792 32 1 0.4408 -0.0381 -2.5238 33 1 1.8586 1.0391 -2.4807 34 1 1.7330 -1.7199 -3.7836 35 1 1.7680 -0.1576 -4.6366 36 1 4.0265 -1.1936 -4.5526 37 1 3.9827 0.3394 -3.6494 38 1 5.9794 -0.5406 -2.3775 39 1 5.8147 -2.1129 -1.5595 40 1 5.8582 -2.0349 -3.3372 41 1 3.9309 0.3112 -1.2384 42 1 3.9367 -1.2427 -0.3705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389638073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -19.273328 kcal Electronic energy + Delta-G solvation = -17763.955777 eV Core-core repulsion = 15163.731859 eV Total energy + Delta-G solvation = -2600.223918 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51595 -36.59187 -33.97578 -32.88403 -31.38956 -29.41524 -28.16644 -26.57685 -24.45353 -23.21845 -22.68325 -20.54416 -20.25675 -19.54738 -16.30662 -16.19040 -15.52433 -14.90281 -14.73140 -14.42614 -14.33414 -14.06426 -13.51557 -13.15707 -12.83911 -12.72496 -12.39061 -12.12955 -12.08419 -11.67084 -11.49741 -11.31850 -11.09464 -10.95790 -10.89405 -10.60213 -10.56437 -10.28230 -10.13028 -9.89035 -9.29645 -9.09160 -8.42926 -8.33482 -7.74542 -5.97692 -4.00105 3.32226 3.39504 3.43628 3.80756 4.44023 4.60402 4.73362 4.75919 4.93420 5.03454 5.20079 5.30102 5.33435 5.38287 5.38478 5.49909 5.58295 5.65699 5.72995 5.76335 5.80025 5.82920 5.91703 5.96730 6.03230 6.22540 6.24475 6.37486 6.41773 6.47651 6.62309 6.96836 6.99311 7.03905 7.56239 7.77031 7.87442 8.02378 8.12755 8.46745 9.07503 9.63624 11.13784 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.004508 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.530405 B = 6209.025766 C = 6748.929369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.088 3.912 3 H 0.035 0.965 4 N -0.688 5.688 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.084 4.084 16 H 0.087 0.913 17 C -0.116 4.116 18 C -0.116 4.116 19 C 0.055 3.945 20 N -0.541 5.541 21 C 0.024 3.976 22 C 0.056 3.944 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.335 0.665 27 H 0.012 0.988 28 H 0.058 0.942 29 H 0.025 0.975 30 H 0.012 0.988 31 H 0.260 0.740 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.030 0.970 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.766 1.595 -19.905 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.023 4.023 3 H 0.053 0.947 4 N -0.321 5.321 5 C -0.061 4.061 6 C -0.013 4.013 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.103 4.103 16 H 0.105 0.895 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.073 4.073 20 N -0.265 5.265 21 C -0.124 4.124 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.155 0.845 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.049 0.951 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.508 0.759 -19.611 19.684 hybrid contribution 1.317 1.972 0.733 2.482 sum -0.192 2.731 -18.878 19.076 Atomic orbital electron populations 1.21804 0.94871 1.02131 1.00743 1.21492 0.95906 0.95443 0.89446 0.94723 1.60679 1.33268 1.34141 1.04009 1.22182 0.99473 0.93459 0.91033 1.19072 0.96175 0.95824 0.90191 1.21222 1.43719 0.96375 0.94598 0.92770 1.24998 0.95451 0.95080 0.98827 1.69985 1.44605 1.14328 1.24327 0.86547 0.77607 0.81149 0.82756 1.19792 1.20959 1.21057 1.21341 0.93847 1.01129 0.93977 0.89481 1.21668 1.00742 0.98914 0.94057 1.21582 0.94486 1.01617 0.97720 1.22101 0.96201 0.96252 0.92795 1.61896 1.11045 1.51350 1.02245 1.22365 0.87148 1.00055 1.02838 1.22216 0.95693 0.96611 0.92683 0.92669 0.93105 0.92134 0.84537 0.96938 0.92376 0.95621 0.96936 0.93072 0.91181 0.92488 0.91018 0.91725 0.91041 0.95223 0.95841 0.90998 0.91529 0.95131 0.90165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.06 37.16 0.34 -1.56 16 2 C 0.09 1.30 2.23 -67.71 -0.15 1.15 16 3 H 0.03 0.54 7.80 -51.93 -0.40 0.13 16 4 N -0.69 -12.55 6.31 -106.73 -0.67 -13.23 16 5 C 0.07 1.44 5.42 -3.83 -0.02 1.42 16 6 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.23 13.29 55.43 0.74 -26.49 16 11 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C -0.08 -1.06 2.07 -90.54 -0.19 -1.25 16 16 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.12 -1.22 4.86 -26.61 -0.13 -1.35 16 18 C -0.12 -1.09 6.09 -26.66 -0.16 -1.26 16 19 C 0.05 0.55 5.46 -3.84 -0.02 0.53 16 20 N -0.54 -6.36 4.91 -242.95 -1.19 -7.55 16 21 C 0.02 0.25 9.59 60.06 0.58 0.82 16 22 C 0.06 0.72 4.49 -3.83 -0.02 0.71 16 23 H 0.05 0.83 7.45 -51.93 -0.39 0.44 16 24 H 0.05 0.58 6.49 -51.93 -0.34 0.24 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.33 5.98 6.19 -39.29 -0.24 5.73 16 27 H 0.01 0.27 8.06 -51.93 -0.42 -0.15 16 28 H 0.06 1.26 7.44 -51.93 -0.39 0.88 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.02 0.24 8.14 -51.92 -0.42 -0.19 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 1.12 6.24 -51.93 -0.32 0.80 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -30.20 322.48 -9.50 -39.69 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.87 Total: -0.13 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.33 Total: -14.02 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: -1.13 Total: -47.28 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.20 -9.50 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.421 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds