Wall clock time and date at job start Mon Mar 30 2020 03:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.53001 * 109.47508 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47582 * 180.02562 * 6 5 4 8 8 H 1.08007 * 119.99614 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00237 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00021 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00069 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.46938 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47245 * 119.99812 * 11 9 7 14 14 H 1.48504 * 109.46799 * 239.99857 * 11 9 7 15 15 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 16 16 H 1.09000 * 109.50296 * 299.91488 * 15 2 1 17 17 C 1.53117 * 109.50653 * 59.99985 * 15 2 1 18 18 C 1.53111 * 109.16166 * 177.59159 * 17 15 2 19 19 C 1.53035 * 109.28231 * 302.34531 * 18 17 15 20 20 N 1.46845 * 109.52086 * 59.17899 * 19 18 17 21 21 C 1.46898 * 111.00201 * 174.16134 * 20 19 18 22 22 C 1.46851 * 111.20054 * 298.25650 * 20 19 18 23 23 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 27 27 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 28 28 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 29 29 H 1.08998 * 109.46853 * 300.00345 * 6 5 4 30 30 H 1.09007 * 109.46934 * 59.99579 * 6 5 4 31 31 H 0.97005 * 120.00338 * 180.02562 * 10 9 7 32 32 H 1.09003 * 109.52007 * 297.50458 * 17 15 2 33 33 H 1.09000 * 109.51940 * 57.68506 * 17 15 2 34 34 H 1.09004 * 109.50006 * 62.28933 * 18 17 15 35 35 H 1.09001 * 109.50321 * 182.36394 * 18 17 15 36 36 H 1.09004 * 109.46319 * 179.19111 * 19 18 17 37 37 H 1.08996 * 109.46308 * 299.17695 * 19 18 17 38 38 H 1.09009 * 109.47085 * 63.95271 * 21 20 19 39 39 H 1.09000 * 109.47919 * 183.95356 * 21 20 19 40 40 H 1.09001 * 109.47189 * 303.95492 * 21 20 19 41 41 H 1.08995 * 109.46189 * 301.73242 * 22 20 19 42 42 H 1.09003 * 109.46298 * 181.75550 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5951 -0.5332 3.5745 7 6 2.6589 0.4053 4.7518 8 1 2.3630 1.4376 4.6361 9 6 3.0951 -0.0537 5.9765 10 7 3.4549 -1.3108 6.1175 11 14 3.1735 1.1095 7.4360 12 1 2.7175 2.4595 7.0180 13 1 2.2943 0.6032 8.5204 14 1 4.5718 1.1907 7.9296 15 6 2.0399 -0.7212 -1.2493 16 1 1.6781 -1.7494 -1.2491 17 6 1.5299 0.0000 -2.5000 18 6 2.0936 -0.6919 -3.7441 19 6 3.6224 -0.6889 -3.6751 20 7 4.0602 -1.3910 -2.4619 21 6 5.5224 -1.5288 -2.4321 22 6 3.5703 -0.7173 -1.2525 23 1 -0.3634 0.5137 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 2.9173 -1.1205 1.0286 27 1 2.7589 1.0461 2.1182 28 1 1.0870 0.6162 2.5525 29 1 1.9184 -1.3566 3.8029 30 1 3.5904 -0.9273 3.3690 31 1 3.7614 -1.6339 6.9792 32 1 0.4408 -0.0381 -2.5238 33 1 1.8586 1.0391 -2.4807 34 1 1.7330 -1.7199 -3.7836 35 1 1.7680 -0.1576 -4.6366 36 1 4.0265 -1.1936 -4.5526 37 1 3.9827 0.3394 -3.6494 38 1 5.9794 -0.5406 -2.3775 39 1 5.8147 -2.1129 -1.5595 40 1 5.8582 -2.0349 -3.3372 41 1 3.9309 0.3112 -1.2384 42 1 3.9367 -1.2427 -0.3705 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389638073.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:43 Heat of formation + Delta-G solvation = -39.470276 kcal Electronic energy + Delta-G solvation = -17764.831582 eV Core-core repulsion = 15163.731859 eV Total energy + Delta-G solvation = -2601.099723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51216 -37.89263 -35.61877 -34.38481 -32.80582 -30.65997 -29.77055 -27.48752 -26.24627 -24.41762 -23.67013 -22.37318 -21.35927 -20.58900 -18.50524 -17.33816 -16.63407 -16.49826 -15.95129 -15.69387 -15.58180 -15.16537 -14.83067 -14.39635 -14.26942 -13.97462 -13.68934 -13.42965 -13.26370 -12.93282 -12.88596 -12.70576 -12.60519 -12.38673 -12.19228 -12.10511 -11.78255 -11.56785 -11.47722 -11.34323 -11.09153 -10.97713 -10.58023 -9.33650 -9.26419 -8.21166 -6.32995 1.39466 1.40162 1.53515 2.39786 2.92115 3.12160 3.30378 3.76584 3.83448 3.92636 4.13733 4.26164 4.38540 4.41017 4.49308 4.50494 4.53064 4.59756 4.62632 4.74341 4.78356 4.84129 4.92196 4.94931 4.97841 5.04159 5.06789 5.10714 5.22509 5.26750 5.42581 5.46398 5.52564 5.66691 5.79104 6.05392 6.14440 6.15444 6.31595 6.55500 6.84300 7.36467 8.91287 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033909 B = 0.004508 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.530405 B = 6209.025766 C = 6748.929369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.087 3.913 3 H 0.032 0.968 4 N -0.694 5.694 5 C 0.086 3.914 6 C 0.032 3.968 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.968 3.032 12 H -0.262 1.262 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.074 4.074 16 H 0.076 0.924 17 C -0.112 4.112 18 C -0.112 4.112 19 C 0.051 3.949 20 N -0.552 5.552 21 C 0.023 3.977 22 C 0.059 3.941 23 H 0.039 0.961 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.335 0.665 27 H 0.014 0.986 28 H 0.057 0.943 29 H -0.006 1.006 30 H -0.011 1.011 31 H 0.264 0.736 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.024 0.976 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 2.841 -21.144 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.050 0.950 4 N -0.327 5.327 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.792 3.208 12 H -0.186 1.186 13 H -0.202 1.202 14 H -0.203 1.203 15 C -0.094 4.094 16 H 0.095 0.905 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.076 4.076 20 N -0.277 5.277 21 C -0.125 4.125 22 C -0.069 4.069 23 H 0.058 0.942 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.012 0.988 30 H 0.007 0.993 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.042 0.958 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.935 2.007 -20.878 21.063 hybrid contribution 1.467 1.529 1.070 2.374 sum -0.469 3.536 -19.807 20.126 Atomic orbital electron populations 1.21791 0.93790 1.02115 1.01476 1.21606 0.96665 0.95175 0.88803 0.94954 1.60627 1.33466 1.33901 1.04724 1.21784 0.98926 0.93113 0.90421 1.18921 0.94252 0.95090 0.92275 1.21632 1.44028 0.96933 0.95707 0.92243 1.25978 0.94700 0.96858 1.02145 1.70118 1.45229 1.16411 1.25406 0.85362 0.77928 0.79032 0.78481 1.18591 1.20244 1.20253 1.21231 0.93602 1.00489 0.94039 0.90549 1.21658 1.01424 0.98719 0.93213 1.21580 0.93873 1.01596 0.97950 1.22212 0.96789 0.96239 0.92367 1.61917 1.11857 1.51524 1.02352 1.22405 0.86476 1.00174 1.03431 1.22102 0.95914 0.96017 0.92877 0.94159 0.90135 0.92511 0.84477 0.96817 0.92437 0.98751 0.99256 0.92713 0.90039 0.92299 0.91360 0.89419 0.89489 0.95260 0.95799 0.91782 0.89728 0.95784 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.06 71.98 0.65 -2.88 16 2 C 0.09 2.54 2.23 44.92 0.10 2.64 16 3 H 0.03 0.98 7.80 -2.39 -0.02 0.96 16 4 N -0.69 -25.82 6.31 -491.58 -3.10 -28.92 16 5 C 0.09 3.81 5.42 86.30 0.47 4.28 16 6 C 0.03 1.77 5.23 29.85 0.16 1.93 16 7 C -0.54 -31.88 9.11 25.60 0.23 -31.64 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.93 -57.84 13.29 21.44 0.28 -57.56 16 11 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 12 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 15 C -0.07 -1.82 2.07 -10.74 -0.02 -1.84 16 16 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.11 -2.10 4.86 30.67 0.15 -1.95 16 18 C -0.11 -1.81 6.09 30.64 0.19 -1.62 16 19 C 0.05 0.92 5.46 86.33 0.47 1.39 16 20 N -0.55 -12.41 4.91 -922.57 -4.53 -16.94 16 21 C 0.02 0.46 9.59 127.69 1.22 1.68 16 22 C 0.06 1.52 4.49 86.33 0.39 1.91 16 23 H 0.04 1.17 7.45 -2.39 -0.02 1.15 16 24 H 0.08 1.63 6.49 -2.39 -0.02 1.62 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.34 12.41 6.19 -89.69 -0.56 11.86 16 27 H 0.01 0.60 8.06 -2.39 -0.02 0.58 16 28 H 0.06 2.53 7.44 -2.38 -0.02 2.51 16 29 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 31 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 32 H 0.08 1.35 6.57 -2.39 -0.02 1.34 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 37 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.02 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 41 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 1.78 6.24 -2.39 -0.01 1.76 16 Total: -1.00 -65.15 322.48 -0.45 -65.60 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.40 Total: 16.46 kcal Atomic # 6 Polarization: -30.05 SS G_CDS: 4.47 Total: -25.58 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -7.35 Total: -103.41 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.15 -0.45 -65.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638073.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.130 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds