Wall clock time and date at job start Mon Mar 30 2020 03:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46787 * 2 1 4 4 N 1.46906 * 109.47179 * 240.00767 * 2 1 3 5 5 C 1.46894 * 111.00469 * 84.99683 * 4 2 1 6 6 C 1.52996 * 109.47032 * 180.02562 * 5 4 2 7 7 C 1.50702 * 109.47005 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99965 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00264 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99718 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00394 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47070 * 59.99772 * 11 9 7 13 13 H 1.48498 * 109.47511 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46797 * 300.00130 * 11 9 7 15 15 C 1.52999 * 109.47509 * 120.00249 * 2 1 3 16 16 H 1.09002 * 109.50363 * 59.99984 * 15 2 1 17 17 C 1.53119 * 109.50349 * 299.92191 * 15 2 1 18 18 C 1.53115 * 109.16284 * 182.36387 * 17 15 2 19 19 C 1.53040 * 109.27691 * 57.65464 * 18 17 15 20 20 N 1.46843 * 109.52392 * 300.82256 * 19 18 17 21 21 C 1.46900 * 111.00190 * 185.84009 * 20 19 18 22 22 C 1.46846 * 111.20060 * 61.74295 * 20 19 18 23 23 H 1.08994 * 109.47596 * 60.00097 * 1 2 3 24 24 H 1.09001 * 109.46787 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47085 * 299.99725 * 1 2 3 26 26 H 1.00901 * 110.99998 * 208.95666 * 4 2 1 27 27 H 1.09003 * 109.47015 * 299.99999 * 5 4 2 28 28 H 1.09000 * 109.47200 * 59.99561 * 5 4 2 29 29 H 1.09003 * 109.46887 * 299.99669 * 6 5 4 30 30 H 1.08991 * 109.47787 * 59.99746 * 6 5 4 31 31 H 0.97003 * 120.00029 * 179.97438 * 10 9 7 32 32 H 1.09003 * 109.52152 * 302.27160 * 17 15 2 33 33 H 1.08999 * 109.52056 * 62.45473 * 17 15 2 34 34 H 1.09001 * 109.50414 * 177.59756 * 18 17 15 35 35 H 1.09001 * 109.50181 * 297.67450 * 18 17 15 36 36 H 1.08997 * 109.46185 * 60.83867 * 19 18 17 37 37 H 1.08998 * 109.45918 * 180.81561 * 19 18 17 38 38 H 1.09003 * 109.46895 * 63.95044 * 21 20 19 39 39 H 1.08999 * 109.47643 * 183.95159 * 21 20 19 40 40 H 1.08998 * 109.46889 * 303.95526 * 21 20 19 41 41 H 1.08996 * 109.46322 * 178.24672 * 22 20 19 42 42 H 1.08991 * 109.46240 * 58.27106 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2227 -2.3469 6 6 2.5950 -0.5330 -3.5745 7 6 2.6588 0.4057 -4.7518 8 1 2.3629 1.4379 -4.6360 9 6 3.0949 -0.0532 -5.9766 10 7 3.4557 -1.3100 -6.1174 11 14 3.1733 1.1101 -7.4360 12 1 4.0940 2.2330 -7.1251 13 1 3.6721 0.3770 -8.6272 14 1 1.8167 1.6453 -7.7158 15 6 2.0401 -0.7213 1.2492 16 1 1.6771 -1.7491 1.2497 17 6 1.5317 0.0010 2.4999 18 6 2.0947 -0.6917 3.7440 19 6 3.6235 -0.6912 3.6744 20 7 4.0597 -1.3941 2.4612 21 6 5.5216 -1.5343 2.4308 22 6 3.5705 -0.7199 1.2518 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 2.9173 -1.1204 -1.0289 27 1 1.0870 0.6164 -2.5525 28 1 2.7587 1.0464 -2.1182 29 1 3.5904 -0.9270 -3.3691 30 1 1.9185 -1.3563 -3.8031 31 1 3.7622 -1.6330 -6.9792 32 1 1.8621 1.0396 2.4804 33 1 0.4426 -0.0353 2.5241 34 1 1.7708 -0.1563 4.6365 35 1 1.7319 -1.7188 3.7841 36 1 3.9855 0.3366 3.6486 37 1 4.0271 -1.1965 4.5517 38 1 5.8439 -2.1612 3.2623 39 1 5.8231 -1.9952 1.4902 40 1 5.9828 -0.5505 2.5176 41 1 3.9356 -1.2460 0.3698 42 1 3.9327 0.3080 1.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389638074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:45 Heat of formation + Delta-G solvation = -39.267955 kcal Electronic energy + Delta-G solvation = -17764.763085 eV Core-core repulsion = 15163.672135 eV Total energy + Delta-G solvation = -2601.090950 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.51210 -37.89199 -35.61619 -34.38389 -32.80589 -30.65913 -29.76904 -27.48776 -26.24187 -24.41665 -23.67258 -22.37099 -21.35975 -20.58827 -18.49665 -17.33685 -16.63538 -16.50249 -15.94523 -15.69458 -15.57556 -15.16717 -14.83375 -14.38186 -14.27653 -13.97679 -13.68511 -13.43293 -13.25918 -12.90464 -12.89039 -12.70490 -12.59391 -12.41721 -12.19088 -12.10134 -11.77761 -11.56711 -11.47712 -11.37082 -11.08959 -10.97924 -10.56647 -9.33494 -9.26325 -8.20599 -6.32620 1.39566 1.43080 1.51110 2.40110 2.92165 3.12524 3.30423 3.76631 3.83402 3.92635 4.13489 4.26411 4.38384 4.40922 4.48376 4.51211 4.53254 4.60229 4.62454 4.74322 4.78377 4.84286 4.92230 4.94882 4.97813 5.04169 5.06697 5.10751 5.22509 5.26806 5.42477 5.46276 5.52570 5.66880 5.79175 6.05509 6.14379 6.15604 6.31653 6.55574 6.84259 7.36681 8.91421 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.004509 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.640259 B = 6208.662339 C = 6748.845437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.033 0.967 4 N -0.694 5.694 5 C 0.086 3.914 6 C 0.033 3.967 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.968 3.032 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.074 4.074 16 H 0.076 0.924 17 C -0.112 4.112 18 C -0.112 4.112 19 C 0.052 3.948 20 N -0.552 5.552 21 C 0.023 3.977 22 C 0.059 3.941 23 H 0.039 0.961 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.335 0.665 27 H 0.057 0.943 28 H 0.014 0.986 29 H -0.011 1.011 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.029 0.971 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.025 0.975 41 H 0.061 0.939 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 2.842 21.092 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.051 0.949 4 N -0.327 5.327 5 C -0.042 4.042 6 C -0.005 4.005 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.791 3.209 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.191 1.191 15 C -0.094 4.094 16 H 0.094 0.906 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.076 4.076 20 N -0.277 5.277 21 C -0.125 4.125 22 C -0.069 4.069 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.155 0.845 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.080 0.920 42 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.929 2.002 20.821 21.006 hybrid contribution 1.460 1.546 -1.054 2.373 sum -0.469 3.548 19.767 20.089 Atomic orbital electron populations 1.21791 0.93793 1.02113 1.01474 1.21606 0.96662 0.95179 0.88799 0.94948 1.60626 1.33470 1.33904 1.04726 1.21783 0.98924 0.93114 0.90420 1.18909 0.94235 0.95075 0.92259 1.21577 1.44252 0.96946 0.95733 0.92230 1.25979 0.94668 0.96861 1.02131 1.70106 1.45068 1.16449 1.25503 0.85470 0.78970 0.78609 0.77800 1.19152 1.20687 1.19112 1.21230 0.93619 1.00482 0.94036 0.90555 1.21659 1.01431 0.98711 0.93213 1.21580 0.93866 1.01595 0.97953 1.22208 0.96795 0.96196 0.92382 1.61918 1.11927 1.51459 1.02350 1.22406 0.86476 1.00359 1.03251 1.22105 0.95917 0.96051 0.92856 0.94152 0.92515 0.90144 0.84476 0.92438 0.96813 0.99275 0.98772 0.92706 0.92297 0.90042 0.89424 0.91354 0.95239 0.89524 0.89805 0.91887 0.95602 0.92035 0.95798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 9.07 71.98 0.65 -2.88 16 2 C 0.09 2.54 2.23 44.91 0.10 2.64 16 3 H 0.03 0.98 7.80 -2.39 -0.02 0.96 16 4 N -0.69 -25.81 6.31 -491.58 -3.10 -28.91 16 5 C 0.09 3.81 5.42 86.30 0.47 4.27 16 6 C 0.03 1.80 5.23 29.85 0.16 1.96 16 7 C -0.55 -31.99 9.11 25.60 0.23 -31.75 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 9 C 0.00 0.10 5.46 84.65 0.46 0.56 16 10 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 11 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 C -0.07 -1.82 2.07 -10.74 -0.02 -1.84 16 16 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 17 C -0.11 -2.10 4.86 30.67 0.15 -1.95 16 18 C -0.11 -1.81 6.09 30.65 0.19 -1.62 16 19 C 0.05 0.92 5.46 86.33 0.47 1.40 16 20 N -0.55 -12.41 4.91 -922.61 -4.53 -16.94 16 21 C 0.02 0.45 9.62 127.69 1.23 1.68 16 22 C 0.06 1.51 4.49 86.33 0.39 1.90 16 23 H 0.04 1.17 7.45 -2.39 -0.02 1.16 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 1.63 6.49 -2.39 -0.02 1.62 16 26 H 0.34 12.41 6.19 -89.69 -0.56 11.85 16 27 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 28 H 0.01 0.60 8.06 -2.39 -0.02 0.58 16 29 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 30 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.35 6.57 -2.39 -0.02 1.34 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.32 8.02 -2.39 -0.02 1.30 16 40 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 1.78 6.15 -2.39 -0.01 1.76 16 42 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -65.03 322.38 -0.45 -65.48 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.40 Total: 16.69 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.47 Total: -25.62 kcal Atomic # 7 Polarization: -96.08 SS G_CDS: -7.35 Total: -103.42 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.03 -0.45 -65.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389638074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.212 kcal (2) G-P(sol) polarization free energy of solvation -65.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds