Wall clock time and date at job start Mon Mar 30 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47697 * 2 1 4 4 N 1.46896 * 109.47426 * 120.00090 * 2 1 3 5 5 C 1.46896 * 111.00394 * 174.99817 * 4 2 1 6 6 C 1.52995 * 109.47138 * 293.95110 * 5 4 2 7 7 N 1.46908 * 109.47269 * 179.97438 * 6 5 4 8 8 C 1.46895 * 110.99742 * 180.02562 * 7 6 5 9 9 H 1.08994 * 109.47601 * 324.99937 * 8 7 6 10 10 C 1.52996 * 109.47260 * 85.00495 * 8 7 6 11 11 C 1.50702 * 109.46770 * 205.00021 * 8 7 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 8 7 13 13 C 1.37884 * 119.99942 * 179.72214 * 11 8 7 14 14 N 1.31514 * 119.99985 * 180.27663 * 13 11 8 15 15 Si 1.86800 * 119.99777 * 0.28166 * 13 11 8 16 16 H 1.48498 * 109.47109 * 89.99834 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99574 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99405 * 15 13 11 19 19 C 1.46906 * 110.99766 * 298.95274 * 4 2 1 20 20 C 1.52993 * 117.49990 * 243.74130 * 19 4 2 21 21 C 1.53004 * 117.49798 * 175.08126 * 19 4 2 22 22 H 1.09001 * 109.47057 * 300.00146 * 1 2 3 23 23 H 1.09000 * 109.47155 * 60.00072 * 1 2 3 24 24 H 1.08994 * 109.47606 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47057 * 239.99854 * 2 1 3 26 26 H 1.08994 * 109.47332 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46856 * 300.00682 * 3 2 1 28 28 H 1.09001 * 109.46986 * 59.99811 * 3 2 1 29 29 H 1.09007 * 109.46936 * 173.95198 * 5 4 2 30 30 H 1.08998 * 109.47456 * 53.95619 * 5 4 2 31 31 H 1.09007 * 109.47135 * 60.00210 * 6 5 4 32 32 H 1.09000 * 109.47739 * 300.00191 * 6 5 4 33 33 H 1.00896 * 110.99110 * 56.05210 * 7 6 5 34 34 H 1.09003 * 109.47532 * 59.99790 * 10 8 7 35 35 H 1.09001 * 109.47094 * 179.97438 * 10 8 7 36 36 H 1.09003 * 109.46851 * 299.99715 * 10 8 7 37 37 H 0.96996 * 119.99730 * 180.02562 * 14 13 11 38 38 H 1.08997 * 115.55177 * 29.41509 * 19 4 2 39 39 H 1.09000 * 117.49961 * 0.02562 * 20 19 4 40 40 H 1.09001 * 117.50012 * 145.01789 * 20 19 4 41 41 H 1.09002 * 117.49982 * 214.97882 * 21 19 4 42 42 H 1.09003 * 117.49475 * 359.97438 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4832 -0.8165 1.1751 6 6 3.8978 -1.7393 0.0273 7 7 5.3615 -1.8629 0.0026 8 6 5.7970 -2.7432 -1.0897 9 1 5.0691 -3.5433 -1.2238 10 6 5.9092 -1.9338 -2.3832 11 6 7.1399 -3.3373 -0.7509 12 1 7.6214 -3.0864 0.1827 13 6 7.7510 -4.2062 -1.6300 14 7 8.9204 -4.7289 -1.3318 15 14 6.9179 -4.6407 -3.2445 16 1 7.3378 -3.6769 -4.2933 17 1 7.3096 -6.0148 -3.6494 18 1 5.4441 -4.5761 -3.0741 19 6 1.5692 -0.0120 2.4209 20 6 2.6417 0.5930 3.3289 21 6 1.8986 -0.6737 3.7606 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6768 1.9564 0.8900 29 1 3.8281 -1.2351 2.1206 30 1 3.9289 0.1675 1.0293 31 1 3.5529 -1.3207 -0.9182 32 1 3.4522 -2.7233 0.1730 33 1 5.7118 -2.1881 0.8911 34 1 6.6372 -1.1337 -2.2492 35 1 6.2329 -2.5870 -3.1936 36 1 4.9379 -1.5041 -2.6283 37 1 9.3504 -5.3399 -1.9504 38 1 0.6199 0.5177 2.3412 39 1 3.6815 0.4866 3.0198 40 1 2.3979 1.5207 3.8468 41 1 1.1662 -0.5790 4.5623 42 1 2.4492 -1.6142 3.7354 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393621444.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:18 Heat of formation + Delta-G solvation = 37.065276 kcal Electronic energy + Delta-G solvation = -18013.373338 eV Core-core repulsion = 15415.592445 eV Total energy + Delta-G solvation = -2597.780893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.59561 -36.22318 -35.13322 -32.82803 -31.33998 -29.37395 -27.39857 -26.25865 -24.95947 -22.66372 -22.19005 -21.85673 -19.85084 -18.59318 -16.81536 -16.48045 -16.02243 -15.59092 -14.68234 -14.10020 -13.94426 -13.69019 -13.53511 -12.99047 -12.63114 -12.55327 -12.35894 -12.16373 -12.01221 -11.83118 -11.54695 -11.41624 -11.11420 -10.90177 -10.84912 -10.64424 -10.50120 -10.32367 -10.19681 -10.05011 -9.47786 -9.01166 -8.60289 -8.06554 -7.48700 -6.09426 -4.09133 3.27543 3.37154 3.39660 3.58725 4.00629 4.39266 4.69904 4.82008 4.90285 4.98451 5.07922 5.13907 5.23470 5.34805 5.37740 5.50491 5.55256 5.59001 5.64401 5.75366 5.78469 5.82164 6.00542 6.04552 6.10004 6.13087 6.19727 6.26103 6.41953 6.42560 6.55365 6.72759 6.82298 7.13904 7.16762 7.40144 7.58647 7.94946 8.35410 8.62428 8.95148 9.52986 11.03606 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.005310 C = 0.004881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.984715 B = 5271.789892 C = 5735.136976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.183 4.183 4 N -0.500 5.500 5 C 0.052 3.948 6 C 0.061 3.939 7 N -0.680 5.680 8 C 0.183 3.817 9 H 0.001 0.999 10 C -0.136 4.136 11 C -0.519 4.519 12 H 0.078 0.922 13 C 0.071 3.929 14 N -0.899 5.899 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.297 1.297 18 H -0.268 1.268 19 C 0.025 3.975 20 C -0.221 4.221 21 C -0.174 4.174 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.338 0.662 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.117 0.883 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.526 10.660 5.084 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.242 4.242 4 N -0.222 5.222 5 C -0.076 4.076 6 C -0.069 4.069 7 N -0.311 5.311 8 C 0.074 3.926 9 H 0.018 0.982 10 C -0.194 4.194 11 C -0.558 4.558 12 H 0.096 0.904 13 C -0.131 4.131 14 N -0.537 5.537 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.225 1.225 18 H -0.194 1.194 19 C -0.085 4.085 20 C -0.260 4.260 21 C -0.212 4.212 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.488 10.618 4.629 20.150 hybrid contribution -0.160 -0.329 -0.549 0.660 sum -16.648 10.288 4.080 19.992 Atomic orbital electron populations 1.21879 0.94596 1.02348 1.01282 1.21763 0.95389 0.92745 0.93641 1.22463 1.02242 0.97633 1.01850 1.62041 1.11394 1.48352 1.00436 1.22227 0.86057 0.99649 0.99627 1.21910 0.90301 0.97420 0.97280 1.60473 1.06927 1.55334 1.08400 1.19503 0.95976 0.88945 0.88138 0.98158 1.22059 0.98948 1.00238 0.98149 1.21108 1.02154 1.25934 1.06568 0.90370 1.24932 0.94643 0.95376 0.98145 1.69891 1.15455 1.31396 1.36945 0.86801 0.80309 0.76458 0.84285 1.20506 1.22515 1.19360 1.22607 0.98487 1.00092 0.87303 1.23583 0.99205 0.97400 1.05778 1.23069 1.03490 0.97160 0.97484 0.92811 0.92397 0.91864 0.89372 0.91896 0.92410 0.92599 0.90924 0.93167 0.91916 0.95354 0.84404 0.92401 0.94518 0.95681 0.92585 0.86518 0.87967 0.89264 0.88855 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.11 37.15 0.34 -1.03 16 2 C 0.07 0.84 2.79 -67.71 -0.19 0.65 16 3 C -0.18 -1.96 8.66 37.16 0.32 -1.64 16 4 N -0.50 -6.31 4.70 -218.72 -1.03 -7.34 16 5 C 0.05 0.74 3.67 -3.83 -0.01 0.73 16 6 C 0.06 1.06 5.42 -3.82 -0.02 1.03 16 7 N -0.68 -13.98 6.30 -107.95 -0.68 -14.66 16 8 C 0.18 4.42 2.19 -68.87 -0.15 4.27 16 9 H 0.00 0.02 6.85 -51.93 -0.36 -0.33 16 10 C -0.14 -3.10 8.90 37.16 0.33 -2.77 16 11 C -0.52 -14.67 9.17 -34.44 -0.32 -14.99 16 12 H 0.08 2.37 7.86 -52.49 -0.41 1.96 16 13 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 14 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 15 Si 0.89 22.31 24.37 -169.99 -4.14 18.17 16 16 H -0.28 -6.79 6.87 56.52 0.39 -6.40 16 17 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.27 -6.51 6.52 56.52 0.37 -6.14 16 19 C 0.02 0.27 4.39 -67.71 -0.30 -0.03 16 20 C -0.22 -2.31 9.53 -26.70 -0.25 -2.57 16 21 C -0.17 -1.82 9.96 -26.69 -0.27 -2.09 16 22 H 0.05 0.47 6.15 -51.93 -0.32 0.15 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 1.13 6.26 -51.93 -0.32 0.80 16 26 H 0.06 0.77 6.40 -51.93 -0.33 0.43 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.56 7.12 -51.93 -0.37 0.19 16 29 H 0.07 1.04 6.21 -51.92 -0.32 0.72 16 30 H 0.05 0.73 5.66 -51.93 -0.29 0.44 16 31 H 0.06 1.08 5.75 -51.92 -0.30 0.79 16 32 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 33 H 0.34 6.95 8.22 -39.29 -0.32 6.63 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.04 0.86 3.29 -51.93 -0.17 0.69 16 36 H 0.02 0.49 7.45 -51.93 -0.39 0.11 16 37 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.12 1.13 5.96 -51.93 -0.31 0.82 16 39 H 0.10 1.19 5.93 -51.93 -0.31 0.89 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.13 7.58 -51.93 -0.39 0.73 16 LS Contribution 310.97 15.07 4.69 4.69 Total: -1.00 -29.42 310.97 -8.06 -37.49 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.06 Total: 4.93 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.61 Total: -16.47 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.94 Total: -48.81 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.42 -8.06 -37.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393621444.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.554 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds