Wall clock time and date at job start Mon Mar 30 2020 03:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46956 * 110.99737 * 190.00070 * 3 2 1 5 5 C 1.53055 * 109.36312 * 183.19004 * 4 3 2 6 6 N 1.46953 * 109.36517 * 301.60111 * 5 4 3 7 7 C 1.46896 * 111.00257 * 183.19196 * 6 5 4 8 8 C 1.52996 * 109.47438 * 170.00068 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47454 * 59.99696 * 15 13 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47261 * 299.99689 * 15 13 11 19 19 C 1.46951 * 110.88269 * 59.31683 * 6 5 4 20 20 C 1.46953 * 111.00258 * 313.80308 * 3 2 1 21 21 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47087 * 299.99667 * 1 2 3 23 23 H 1.08993 * 109.47614 * 59.99524 * 1 2 3 24 24 H 1.08995 * 109.47015 * 240.00479 * 2 1 3 25 25 H 1.08994 * 109.47357 * 119.99990 * 2 1 3 26 26 H 1.09003 * 109.49191 * 63.22256 * 4 3 2 27 27 H 1.08996 * 109.49029 * 303.15772 * 4 3 2 28 28 H 1.09000 * 109.48837 * 181.63050 * 5 4 3 29 29 H 1.08997 * 109.48482 * 61.56852 * 5 4 3 30 30 H 1.09000 * 109.47585 * 49.99274 * 7 6 5 31 31 H 1.09001 * 109.46551 * 289.99759 * 7 6 5 32 32 H 1.08996 * 109.47452 * 59.99844 * 8 7 6 33 33 H 1.09001 * 109.46997 * 299.99418 * 8 7 6 34 34 H 1.09001 * 109.47502 * 60.00153 * 9 8 7 35 35 H 1.09001 * 109.47289 * 299.99950 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 37 37 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 38 38 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.48897 * 60.65013 * 19 6 5 40 40 H 1.08998 * 109.49302 * 180.70847 * 19 6 5 41 41 H 1.09007 * 109.48844 * 296.78098 * 20 3 2 42 42 H 1.09000 * 109.49165 * 56.84313 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1418 7 6 3.7215 5.0791 -1.1419 8 6 3.1348 5.8275 -2.3405 9 6 3.6444 7.2701 -2.3401 10 6 3.0582 8.0183 -3.5391 11 6 3.5606 9.4391 -3.5391 12 1 4.2306 9.7750 -2.7615 13 6 3.1641 10.3105 -4.5313 14 7 2.3478 9.9017 -5.4780 15 14 3.7862 12.0718 -4.5309 16 1 5.2683 12.0734 -4.6233 17 1 3.2174 12.7981 -5.6947 18 1 3.3679 12.7443 -3.2747 19 6 1.7825 3.6479 -0.9036 20 6 1.2998 2.1981 -0.9901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.6875 1.0338 -1.2295 27 1 3.9806 0.8320 0.5149 28 1 5.0214 2.9211 -0.3567 29 1 3.7578 3.2697 0.8481 30 1 4.8093 5.0799 -1.2099 31 1 3.4148 5.5728 -0.2198 32 1 2.0470 5.8267 -2.2723 33 1 3.4415 5.3337 -3.2626 34 1 4.7323 7.2713 -2.4081 35 1 3.3374 7.7636 -1.4180 36 1 3.3656 7.5247 -4.4611 37 1 1.9704 8.0172 -3.4716 38 1 2.0686 10.5148 -6.1758 39 1 1.5640 4.0453 0.0876 40 1 1.2708 4.2471 -1.6568 41 1 1.4936 1.8094 -1.9899 42 1 0.2300 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395476473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:02 Heat of formation + Delta-G solvation = -11.216541 kcal Electronic energy + Delta-G solvation = -17290.345211 eV Core-core repulsion = 14690.470661 eV Total energy + Delta-G solvation = -2599.874549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49826 -36.53503 -34.29800 -32.42932 -31.23688 -30.62337 -28.49239 -26.07238 -24.12879 -23.76357 -21.82172 -21.06823 -19.92603 -19.74138 -16.52919 -16.17618 -15.51324 -15.12015 -14.95244 -14.58414 -14.54513 -14.37014 -14.18121 -13.35174 -12.67708 -12.53996 -12.33409 -12.15011 -11.78954 -11.66727 -11.43689 -11.41737 -11.30101 -10.96726 -10.83266 -10.75066 -10.44702 -10.43828 -10.24311 -9.56467 -9.22059 -8.98143 -8.52447 -8.29913 -8.21088 -5.95033 -3.97226 3.35999 3.40057 3.42738 3.70957 3.96363 4.49881 4.71031 4.79833 4.90108 5.01146 5.16651 5.19809 5.30007 5.33499 5.38812 5.40286 5.48674 5.56877 5.62869 5.68369 5.74161 5.82993 5.87097 5.95163 5.97195 5.99707 6.20716 6.29225 6.56820 6.83606 6.85190 6.87654 7.01778 7.13762 7.18711 7.30275 7.73977 7.90567 8.06289 8.49174 9.10160 9.66412 11.16334 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.056051 B = 0.003436 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.421542 B = 8147.543559 C = 8482.992607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.051 3.949 3 N -0.542 5.542 4 C 0.058 3.942 5 C 0.057 3.943 6 N -0.541 5.541 7 C 0.057 3.943 8 C -0.113 4.113 9 C -0.109 4.109 10 C 0.022 3.978 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.891 3.109 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.054 3.946 20 C 0.052 3.948 21 H 0.058 0.942 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.015 0.985 37 H 0.014 0.986 38 H 0.260 0.740 39 H 0.039 0.961 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 -19.310 11.263 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.077 4.077 3 N -0.268 5.268 4 C -0.070 4.070 5 C -0.072 4.072 6 N -0.266 5.266 7 C -0.070 4.070 8 C -0.151 4.151 9 C -0.147 4.147 10 C -0.015 4.015 11 C -0.559 4.559 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.075 4.075 20 C -0.076 4.076 21 H 0.077 0.923 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.060 0.940 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.165 -19.257 11.105 22.260 hybrid contribution 0.330 1.000 -0.077 1.056 sum -0.835 -18.257 11.028 21.345 Atomic orbital electron populations 1.21937 0.95015 1.01822 1.02661 1.22063 0.95806 0.89199 1.00604 1.62258 1.04180 1.10616 1.49734 1.22146 0.87980 0.96780 1.00076 1.22126 0.98238 0.92685 0.94140 1.62191 1.03890 1.11893 1.48653 1.22217 0.99901 0.86488 0.98394 1.21664 1.00008 0.96401 0.97027 1.21600 0.99653 0.92816 1.00670 1.19079 0.95990 0.94236 0.92208 1.21263 1.28256 0.96206 1.10161 0.92833 1.25030 0.95222 0.98644 0.95619 1.69955 1.34188 1.35599 1.13869 0.86673 0.79121 0.84879 0.77402 1.20270 1.21307 1.20285 1.22220 0.88765 0.95923 1.00560 1.22291 0.98452 0.93153 0.93669 0.92261 0.91788 0.92175 0.94963 0.90874 0.94005 0.90619 0.90395 0.94269 0.91057 0.95080 0.92623 0.91773 0.93492 0.93697 0.96646 0.96761 0.93005 0.94240 0.89543 0.94027 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.17 37.16 0.34 -0.85 16 2 C 0.05 0.44 6.00 -3.82 -0.02 0.42 16 3 N -0.54 -5.81 4.86 -234.47 -1.14 -6.95 16 4 C 0.06 0.61 5.58 -3.77 -0.02 0.59 16 5 C 0.06 0.66 5.61 -3.77 -0.02 0.64 16 6 N -0.54 -7.42 4.71 -234.48 -1.10 -8.53 16 7 C 0.06 0.85 4.96 -3.83 -0.02 0.83 16 8 C -0.11 -2.00 5.15 -26.73 -0.14 -2.14 16 9 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 10 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 11 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 12 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 15 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C 0.05 0.69 5.41 -3.77 -0.02 0.67 16 20 C 0.05 0.59 4.93 -3.77 -0.02 0.57 16 21 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.47 6.26 -51.93 -0.33 0.14 16 24 H 0.03 0.28 8.08 -51.93 -0.42 -0.14 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.06 0.98 6.49 -51.93 -0.34 0.65 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 1.16 6.34 -51.93 -0.33 0.84 16 41 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.83 5.99 -51.93 -0.31 0.52 16 LS Contribution 324.49 15.07 4.89 4.89 Total: -1.00 -30.66 324.49 -10.26 -40.92 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -8.02 Total: -5.38 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.61 Total: -15.18 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: -1.51 Total: -42.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.66 -10.26 -40.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395476473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.704 kcal (2) G-P(sol) polarization free energy of solvation -30.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds