Wall clock time and date at job start Mon Mar 30 2020 03:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.46867 * 2 1 4 4 C 1.46956 * 110.99737 * 190.00070 * 3 2 1 5 5 C 1.53055 * 109.36312 * 183.19004 * 4 3 2 6 6 N 1.46953 * 109.36517 * 301.60111 * 5 4 3 7 7 C 1.46896 * 111.00257 * 183.19196 * 6 5 4 8 8 C 1.52996 * 109.47438 * 170.00068 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 8 12 12 H 1.08005 * 119.99819 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00046 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00192 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47454 * 59.99696 * 15 13 11 17 17 H 1.48506 * 109.47297 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47261 * 299.99689 * 15 13 11 19 19 C 1.46951 * 110.88269 * 59.31683 * 6 5 4 20 20 C 1.46953 * 111.00258 * 313.80308 * 3 2 1 21 21 H 1.09000 * 109.47083 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47087 * 299.99667 * 1 2 3 23 23 H 1.08993 * 109.47614 * 59.99524 * 1 2 3 24 24 H 1.08995 * 109.47015 * 240.00479 * 2 1 3 25 25 H 1.08994 * 109.47357 * 119.99990 * 2 1 3 26 26 H 1.09003 * 109.49191 * 63.22256 * 4 3 2 27 27 H 1.08996 * 109.49029 * 303.15772 * 4 3 2 28 28 H 1.09000 * 109.48837 * 181.63050 * 5 4 3 29 29 H 1.08997 * 109.48482 * 61.56852 * 5 4 3 30 30 H 1.09000 * 109.47585 * 49.99274 * 7 6 5 31 31 H 1.09001 * 109.46551 * 289.99759 * 7 6 5 32 32 H 1.08996 * 109.47452 * 59.99844 * 8 7 6 33 33 H 1.09001 * 109.46997 * 299.99418 * 8 7 6 34 34 H 1.09001 * 109.47502 * 60.00153 * 9 8 7 35 35 H 1.09001 * 109.47289 * 299.99950 * 9 8 7 36 36 H 1.09001 * 109.47002 * 299.99574 * 10 9 8 37 37 H 1.08993 * 109.46955 * 60.00011 * 10 9 8 38 38 H 0.96996 * 120.00505 * 179.97438 * 14 13 11 39 39 H 1.09003 * 109.48897 * 60.65013 * 19 6 5 40 40 H 1.08998 * 109.49302 * 180.70847 * 19 6 5 41 41 H 1.09007 * 109.48844 * 296.78098 * 20 3 2 42 42 H 1.09000 * 109.49165 * 56.84313 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4690 1.4312 -0.2383 5 6 3.9516 2.8811 -0.1517 6 7 3.2318 3.6941 -1.1418 7 6 3.7215 5.0791 -1.1419 8 6 3.1348 5.8275 -2.3405 9 6 3.6444 7.2701 -2.3401 10 6 3.0582 8.0183 -3.5391 11 6 3.5606 9.4391 -3.5391 12 1 4.2306 9.7750 -2.7615 13 6 3.1641 10.3105 -4.5313 14 7 2.3478 9.9017 -5.4780 15 14 3.7862 12.0718 -4.5309 16 1 5.2683 12.0734 -4.6233 17 1 3.2174 12.7981 -5.6947 18 1 3.3679 12.7443 -3.2747 19 6 1.7825 3.6479 -0.9036 20 6 1.2998 2.1981 -0.9901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.6875 1.0338 -1.2295 27 1 3.9806 0.8320 0.5149 28 1 5.0214 2.9211 -0.3567 29 1 3.7578 3.2697 0.8481 30 1 4.8093 5.0799 -1.2099 31 1 3.4148 5.5728 -0.2198 32 1 2.0470 5.8267 -2.2723 33 1 3.4415 5.3337 -3.2626 34 1 4.7323 7.2713 -2.4081 35 1 3.3374 7.7636 -1.4180 36 1 3.3656 7.5247 -4.4611 37 1 1.9704 8.0172 -3.4716 38 1 2.0686 10.5148 -6.1758 39 1 1.5640 4.0453 0.0876 40 1 1.2708 4.2471 -1.6568 41 1 1.4936 1.8094 -1.9899 42 1 0.2300 2.1581 -0.7851 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395476473.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:01 Heat of formation + Delta-G solvation = -31.217847 kcal Electronic energy + Delta-G solvation = -17291.212533 eV Core-core repulsion = 14690.470661 eV Total energy + Delta-G solvation = -2600.741871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43177 -37.64947 -36.00899 -34.24218 -32.29785 -31.61292 -30.01526 -27.41782 -25.59021 -24.86260 -22.94719 -22.31040 -21.59935 -20.67768 -18.42056 -17.43470 -16.64457 -16.52216 -16.02208 -15.76350 -15.74561 -15.50618 -15.32953 -14.51726 -14.30252 -13.79106 -13.70316 -13.30675 -13.26431 -12.85069 -12.72161 -12.59899 -12.35049 -12.28080 -12.21384 -12.14759 -11.96173 -11.75853 -11.52136 -11.33040 -11.22881 -10.95223 -10.54806 -9.40324 -9.22939 -8.19555 -6.31298 1.39508 1.43110 1.51048 2.41115 2.88267 2.95132 3.12979 3.88489 3.92258 4.04329 4.13976 4.21466 4.25438 4.37894 4.46854 4.50809 4.53167 4.55184 4.60666 4.66214 4.77735 4.83574 4.87520 4.88815 4.95565 5.00345 5.10178 5.14174 5.22868 5.28042 5.30651 5.35611 5.54959 5.77727 5.86840 5.98938 6.00186 6.17730 6.20462 6.26381 6.86099 7.38000 8.92237 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.056051 B = 0.003436 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.421542 B = 8147.543559 C = 8482.992607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 N -0.551 5.551 4 C 0.061 3.939 5 C 0.056 3.944 6 N -0.552 5.552 7 C 0.068 3.932 8 C -0.102 4.102 9 C -0.096 4.096 10 C 0.024 3.976 11 C -0.546 4.546 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.967 3.033 16 H -0.266 1.266 17 H -0.282 1.282 18 H -0.266 1.266 19 C 0.053 3.947 20 C 0.058 3.942 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.084 0.916 26 H 0.035 0.965 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.049 0.951 36 H -0.011 1.011 37 H -0.012 1.012 38 H 0.264 0.736 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 -19.664 12.554 23.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 N -0.277 5.277 4 C -0.067 4.067 5 C -0.071 4.071 6 N -0.277 5.277 7 C -0.060 4.060 8 C -0.140 4.140 9 C -0.134 4.134 10 C -0.013 4.013 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.075 4.075 20 C -0.070 4.070 21 H 0.093 0.907 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.007 0.993 37 H 0.007 0.993 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.418 -19.632 12.412 23.230 hybrid contribution 0.071 1.062 -0.491 1.172 sum -0.346 -18.570 11.921 22.070 Atomic orbital electron populations 1.21912 0.94276 1.02726 1.02214 1.22141 0.96455 0.88019 1.01104 1.62292 1.04311 1.11774 1.49284 1.22159 0.88080 0.96110 1.00383 1.22202 0.98645 0.92978 0.93321 1.62163 1.04435 1.11200 1.49865 1.22010 1.00130 0.87098 0.96735 1.21478 0.99793 0.94566 0.98151 1.21400 0.99624 0.94263 0.98149 1.19004 0.94543 0.94272 0.93471 1.21727 1.28622 0.97484 1.10603 0.92151 1.26027 0.95229 1.03738 0.95032 1.70096 1.35352 1.37457 1.14605 0.85483 0.78912 0.78694 0.77854 1.19087 1.20762 1.19098 1.22215 0.88422 0.97034 0.99833 1.22213 0.99192 0.92110 0.93448 0.90742 0.92130 0.92656 0.94958 0.89774 0.94703 0.88613 0.89337 0.94463 0.90185 0.94858 0.93043 0.92783 0.92924 0.93210 0.99303 0.99313 0.92755 0.94644 0.90717 0.94979 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.17 71.98 0.66 -1.40 16 2 C 0.05 0.77 6.00 86.30 0.52 1.29 16 3 N -0.55 -10.91 4.86 -895.73 -4.35 -15.26 16 4 C 0.06 1.15 5.58 86.31 0.48 1.64 16 5 C 0.06 1.22 5.61 86.31 0.48 1.70 16 6 N -0.55 -14.61 4.71 -895.75 -4.22 -18.83 16 7 C 0.07 1.95 4.96 86.30 0.43 2.38 16 8 C -0.10 -3.62 5.15 30.59 0.16 -3.46 16 9 C -0.10 -4.07 5.15 30.60 0.16 -3.92 16 10 C 0.02 1.33 4.97 29.85 0.15 1.48 16 11 C -0.55 -32.08 9.11 25.60 0.23 -31.85 16 12 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 14 N -0.93 -58.36 13.29 21.45 0.28 -58.07 16 15 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 C 0.05 1.35 5.41 86.31 0.47 1.82 16 20 C 0.06 1.26 4.93 86.31 0.43 1.69 16 21 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.05 0.79 6.26 -2.39 -0.01 0.77 16 24 H 0.03 0.50 8.08 -2.39 -0.02 0.48 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.71 8.07 -2.39 -0.02 1.69 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 2.17 8.03 -2.39 -0.02 2.15 16 31 H 0.03 0.95 8.12 -2.39 -0.02 0.93 16 32 H 0.05 1.85 6.49 -2.39 -0.02 1.84 16 33 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 39 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 2.04 6.34 -2.39 -0.02 2.03 16 41 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.09 1.81 5.99 -2.39 -0.01 1.79 16 Total: -1.00 -65.45 324.49 -0.70 -66.15 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.94 Total: 7.27 kcal Atomic # 6 Polarization: -32.96 SS G_CDS: 4.62 Total: -28.33 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -8.29 Total: -92.16 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -65.45 -0.70 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395476473.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.933 kcal (2) G-P(sol) polarization free energy of solvation -65.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds