Wall clock time and date at job start Mon Mar 30 2020 03:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47026 * 2 1 4 4 C 1.46894 * 111.00174 * 160.34568 * 3 2 1 5 5 C 1.53008 * 109.46915 * 287.79185 * 4 3 2 6 6 C 1.46901 * 110.99912 * 284.29820 * 3 2 1 7 7 C 1.53001 * 109.47103 * 170.00122 * 6 3 2 8 8 N 1.46901 * 109.47103 * 180.02562 * 7 6 3 9 9 C 1.48566 * 110.99985 * 290.12689 * 8 7 6 10 10 C 1.54379 * 104.59293 * 200.96307 * 9 8 7 11 11 C 1.54260 * 105.06501 * 23.84691 * 10 9 8 12 12 H 1.08998 * 110.32373 * 241.10713 * 11 10 9 13 13 C 1.50696 * 110.32343 * 118.99777 * 11 10 9 14 14 H 1.07997 * 120.00536 * 247.50006 * 13 11 10 15 15 C 1.37881 * 119.99689 * 67.49593 * 13 11 10 16 16 N 1.31512 * 119.99910 * 7.35911 * 15 13 11 17 17 Si 1.86803 * 119.99931 * 187.35212 * 15 13 11 18 18 H 1.48501 * 109.46935 * 94.97898 * 17 15 13 19 19 H 1.48495 * 109.47261 * 214.98211 * 17 15 13 20 20 H 1.48504 * 109.46972 * 334.98015 * 17 15 13 21 21 C 1.48824 * 110.97532 * 174.70655 * 8 7 6 22 22 H 1.09000 * 109.46823 * 185.86139 * 1 2 3 23 23 H 1.08998 * 109.47427 * 305.86286 * 1 2 3 24 24 H 1.08999 * 109.46926 * 65.86189 * 1 2 3 25 25 H 1.09003 * 109.47044 * 239.99997 * 2 1 3 26 26 H 1.09000 * 109.47295 * 119.99700 * 2 1 3 27 27 H 1.09001 * 109.47023 * 47.78964 * 4 3 2 28 28 H 1.08999 * 109.47530 * 167.79388 * 4 3 2 29 29 H 1.08995 * 109.47071 * 307.81293 * 5 4 3 30 30 H 1.09001 * 109.46643 * 67.81126 * 5 4 3 31 31 H 1.09000 * 109.46869 * 187.81245 * 5 4 3 32 32 H 1.09005 * 109.47371 * 49.99967 * 6 3 2 33 33 H 1.09005 * 109.46938 * 290.00224 * 6 3 2 34 34 H 1.08997 * 109.47423 * 59.99808 * 7 6 3 35 35 H 1.08997 * 109.46725 * 299.99617 * 7 6 3 36 36 H 1.08995 * 110.41385 * 82.17943 * 9 8 7 37 37 H 1.09005 * 110.50534 * 319.78502 * 9 8 7 38 38 H 1.09004 * 110.32108 * 264.95446 * 10 9 8 39 39 H 1.08998 * 110.32677 * 142.75237 * 10 9 8 40 40 H 0.97000 * 119.99970 * 179.97438 * 16 15 13 41 41 H 1.08998 * 110.44690 * 40.31952 * 21 8 7 42 42 H 1.08999 * 110.49151 * 277.80098 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4128 1.4509 0.4612 5 6 3.4639 1.1902 1.9681 6 6 1.8758 1.9942 -1.3290 7 6 2.1576 3.4951 -1.2352 8 7 2.0132 4.1045 -2.5640 9 6 3.1118 3.6769 -3.4681 10 6 3.1500 4.7561 -4.5713 11 6 2.5204 6.0091 -3.9284 12 1 1.6249 6.3054 -4.4746 13 6 3.5154 7.1405 -3.9031 14 1 3.9045 7.4966 -2.9607 15 6 3.9292 7.7211 -5.0833 16 7 3.3516 7.3894 -6.2172 17 14 5.3101 8.9791 -5.0714 18 1 6.5989 8.3021 -5.3646 19 1 5.0474 10.0124 -6.1050 20 1 5.3819 9.6227 -3.7350 21 6 2.1551 5.5841 -2.4899 22 1 -0.3633 -1.0223 0.1049 23 1 -0.3634 0.6020 0.8328 24 1 -0.3633 0.4202 -0.9378 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 4.0036 0.6965 -0.0583 28 1 3.8192 2.4399 0.2497 29 1 2.7657 1.8555 2.4758 30 1 3.1888 0.1544 2.1671 31 1 4.4737 1.3749 2.3347 32 1 0.8603 1.8372 -1.6927 33 1 2.5838 1.5339 -2.0182 34 1 3.1731 3.6522 -0.8715 35 1 1.4496 3.9553 -0.5460 36 1 2.8912 2.7003 -3.8990 37 1 4.0597 3.6490 -2.9305 38 1 2.5635 4.4375 -5.4331 39 1 4.1793 4.9589 -4.8671 40 1 3.6425 7.7981 -7.0474 41 1 2.9530 5.8559 -1.7989 42 1 1.2145 6.0428 -2.1853 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397784967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:07 Heat of formation + Delta-G solvation = -20.615695 kcal Electronic energy + Delta-G solvation = -17793.746426 eV Core-core repulsion = 15193.464298 eV Total energy + Delta-G solvation = -2600.282127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.05801 -38.73012 -35.24572 -33.14770 -32.72052 -30.61378 -29.93717 -27.87990 -26.02844 -23.93607 -23.66270 -21.85148 -21.45996 -20.82708 -18.35823 -17.18407 -16.74331 -16.54310 -16.32050 -15.87785 -15.39948 -15.17706 -14.68075 -14.59681 -14.04620 -13.67434 -13.50398 -13.08908 -13.04736 -12.91548 -12.69713 -12.55216 -12.54042 -12.36318 -12.26517 -12.05602 -11.96422 -11.73395 -11.52327 -11.44840 -11.12276 -10.81303 -10.50779 -9.40674 -9.25357 -8.15301 -6.24470 1.40173 1.41165 1.51728 2.41506 2.75258 3.15708 3.39898 3.97247 3.98708 4.05655 4.10744 4.28614 4.32417 4.37761 4.51524 4.52915 4.59323 4.62160 4.64992 4.73036 4.79808 4.83506 4.91725 5.00860 5.02196 5.08923 5.12482 5.16291 5.22266 5.30187 5.36801 5.42445 5.58181 5.71840 5.84660 5.95117 6.08221 6.19787 6.27837 6.40032 6.86542 7.42693 8.94881 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040968 B = 0.004576 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.291048 B = 6116.811083 C = 6468.430395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.041 3.959 5 C -0.139 4.139 6 C 0.072 3.928 7 C 0.055 3.945 8 N -0.518 5.518 9 C 0.047 3.953 10 C -0.092 4.092 11 C 0.038 3.962 12 H 0.003 0.997 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.015 3.985 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.267 1.267 21 C 0.054 3.946 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.033 0.967 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.030 0.970 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.033 0.967 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 -14.503 13.126 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.270 5.270 4 C -0.087 4.087 5 C -0.197 4.197 6 C -0.056 4.056 7 C -0.074 4.074 8 N -0.243 5.243 9 C -0.081 4.081 10 C -0.130 4.130 11 C 0.019 3.981 12 H 0.022 0.978 13 C -0.572 4.572 14 H 0.072 0.928 15 C -0.184 4.184 16 N -0.558 5.558 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.209 1.209 20 H -0.191 1.191 21 C -0.074 4.074 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.050 0.950 26 H 0.104 0.896 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.853 -14.376 13.089 19.530 hybrid contribution 1.924 0.719 -0.798 2.203 sum 0.071 -13.657 12.291 18.374 Atomic orbital electron populations 1.21743 0.94353 1.02131 1.01859 1.22171 0.96712 0.87866 1.01130 1.62044 1.20730 1.18926 1.25338 1.22210 0.88276 1.00936 0.97240 1.21728 1.02086 1.01979 0.93874 1.21882 1.01539 0.93030 0.89182 1.22204 0.99679 0.95175 0.90336 1.65363 1.43111 1.05624 1.10160 1.23024 0.92171 0.98521 0.94409 1.22108 0.99188 0.95455 0.96284 1.19344 0.94759 0.92964 0.91036 0.97844 1.21515 1.25236 1.17785 0.92617 0.92832 1.25750 0.98730 0.98612 0.95319 1.70113 1.41909 1.44991 0.98783 0.85617 0.79667 0.78819 0.78029 1.20110 1.20893 1.19099 1.23080 0.98998 0.87255 0.98062 0.90865 0.92303 0.93625 0.95024 0.89592 0.94822 0.91686 0.92371 0.92066 0.91454 0.90221 0.95458 0.95146 0.90550 0.90099 0.94645 0.94840 0.94350 0.92954 0.94919 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.93 71.98 0.71 -1.74 16 2 C 0.05 0.90 5.55 86.30 0.48 1.38 16 3 N -0.54 -12.29 4.39 -896.20 -3.93 -16.22 16 4 C 0.04 0.86 5.55 86.31 0.48 1.33 16 5 C -0.14 -2.31 9.85 71.98 0.71 -1.60 16 6 C 0.07 1.90 4.84 86.30 0.42 2.31 16 7 C 0.05 1.69 4.78 86.30 0.41 2.10 16 8 N -0.52 -19.58 5.38 -880.76 -4.74 -24.32 16 9 C 0.05 1.79 5.74 86.45 0.50 2.29 16 10 C -0.09 -4.40 6.22 31.49 0.20 -4.20 16 11 C 0.04 1.98 2.84 -10.65 -0.03 1.95 16 12 H 0.00 0.19 8.12 -2.39 -0.02 0.17 16 13 C -0.53 -29.83 8.27 25.60 0.21 -29.61 16 14 H 0.05 2.94 7.55 -2.91 -0.02 2.91 16 15 C 0.02 0.85 5.18 84.66 0.44 1.28 16 16 N -0.92 -54.41 13.01 21.45 0.28 -54.13 16 17 Si 0.95 43.85 29.54 68.60 2.03 45.88 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 C 0.05 2.32 6.04 86.40 0.52 2.84 16 22 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.04 0.87 6.98 -2.39 -0.02 0.86 16 25 H 0.03 0.60 8.00 -2.39 -0.02 0.58 16 26 H 0.09 1.35 6.38 -2.39 -0.02 1.33 16 27 H 0.03 0.68 8.05 -2.39 -0.02 0.66 16 28 H 0.06 1.52 5.93 -2.39 -0.01 1.51 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.88 6.81 -2.39 -0.02 0.86 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 2.16 6.73 -2.38 -0.02 2.14 16 33 H 0.03 0.74 7.24 -2.38 -0.02 0.73 16 34 H 0.03 0.95 6.02 -2.39 -0.01 0.94 16 35 H 0.08 2.36 8.13 -2.39 -0.02 2.34 16 36 H 0.08 2.78 7.76 -2.39 -0.02 2.76 16 37 H 0.04 1.33 7.83 -2.38 -0.02 1.31 16 38 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.04 1.97 7.58 -2.39 -0.02 1.96 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.03 1.41 7.54 -2.39 -0.02 1.39 16 42 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -60.23 322.22 -0.37 -60.59 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 0.95 Total: 9.87 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 5.04 Total: -21.67 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -8.39 Total: -94.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -60.23 -0.37 -60.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397784967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.978 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds