Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52990 * 109.47352 * 2 1 4 4 N 1.46901 * 109.46858 * 240.00358 * 2 1 3 5 5 C 1.46897 * 111.00425 * 36.22246 * 4 2 1 6 6 C 1.50701 * 109.46992 * 76.85228 * 5 4 2 7 7 H 1.07999 * 120.00031 * 5.20093 * 6 5 4 8 8 C 1.37877 * 119.99905 * 185.19019 * 6 5 4 9 9 N 1.31518 * 120.00415 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47028 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46906 * 120.00460 * 10 8 6 13 13 H 1.48494 * 109.47201 * 240.00419 * 10 8 6 14 14 C 1.46911 * 110.99965 * 272.26956 * 4 2 1 15 15 H 1.08997 * 109.47085 * 170.20286 * 14 4 2 16 16 C 1.52997 * 109.46993 * 50.20420 * 14 4 2 17 17 C 1.52994 * 109.46735 * 290.20240 * 14 4 2 18 18 H 1.09000 * 110.33597 * 67.72581 * 17 14 4 19 19 C 1.54911 * 110.37278 * 189.97288 * 17 14 4 20 20 C 1.55266 * 101.59933 * 155.81737 * 19 17 14 21 21 C 1.54319 * 103.08514 * 324.49359 * 20 19 17 22 22 N 1.47444 * 107.23229 * 22.20174 * 21 20 19 23 23 H 1.09006 * 109.47220 * 52.45977 * 1 2 3 24 24 H 1.09003 * 109.46706 * 292.46007 * 1 2 3 25 25 H 1.08999 * 109.47573 * 172.46109 * 1 2 3 26 26 H 1.09003 * 109.47250 * 120.00584 * 2 1 3 27 27 H 1.09007 * 109.47016 * 67.63975 * 3 2 1 28 28 H 1.09002 * 109.47459 * 187.63565 * 3 2 1 29 29 H 1.09007 * 109.47540 * 307.63852 * 3 2 1 30 30 H 1.08991 * 109.47686 * 196.85864 * 5 4 2 31 31 H 1.09002 * 109.46975 * 316.85761 * 5 4 2 32 32 H 0.96995 * 120.00223 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47024 * 299.77468 * 16 14 4 34 34 H 1.08997 * 109.47403 * 59.77017 * 16 14 4 35 35 H 1.08999 * 109.47113 * 179.77542 * 16 14 4 36 36 H 1.08994 * 110.99714 * 273.99901 * 19 17 14 37 37 H 1.09008 * 110.98361 * 37.81222 * 19 17 14 38 38 H 1.09000 * 110.74336 * 206.05681 * 20 19 17 39 39 H 1.08998 * 110.75348 * 82.93413 * 20 19 17 40 40 H 1.08998 * 109.89190 * 262.79869 * 21 20 19 41 41 H 1.08996 * 109.88718 * 141.60851 * 21 20 19 42 42 H 1.00904 * 110.99954 * 238.71686 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6924 -1.1995 5 6 1.1520 -0.4231 -2.3539 6 6 1.4375 0.9578 -2.8855 7 1 2.2446 1.5411 -2.4676 8 6 0.6684 1.4764 -3.9056 9 7 -0.3146 0.7662 -4.4144 10 14 1.0228 3.1879 -4.5651 11 1 2.1722 3.7736 -3.8295 12 1 1.3522 3.1029 -6.0106 13 1 -0.1738 4.0473 -4.3797 14 6 2.1438 -2.1365 -0.9599 15 1 2.3384 -2.6460 -1.9036 16 6 0.8432 -2.6665 -0.3530 17 6 3.3006 -2.3952 0.0074 18 1 3.0600 -2.0085 0.9976 19 6 3.6128 -3.9107 0.0816 20 6 5.0967 -3.9017 0.5387 21 6 5.6757 -2.6642 -0.1787 22 7 4.5436 -1.7756 -0.4992 23 1 -0.3634 0.6262 -0.8149 24 1 -0.3633 0.3926 0.9498 25 1 -0.3634 -1.0187 -0.1348 26 1 1.8933 -0.5139 0.8899 27 1 1.7925 1.9153 0.9505 28 1 3.1214 1.4454 -0.1365 29 1 1.5694 1.9942 -0.8138 30 1 1.3454 -1.1598 -3.1335 31 1 0.1081 -0.4853 -2.0462 32 1 -0.8559 1.1312 -5.1318 33 1 0.6506 -2.1599 0.5927 34 1 0.0184 -2.4785 -1.0404 35 1 0.9339 -3.7387 -0.1790 36 1 2.9787 -4.4045 0.8178 37 1 3.5095 -4.3790 -0.8973 38 1 5.6062 -4.8090 0.2139 39 1 5.1669 -3.7881 1.6204 40 1 6.1790 -2.9691 -1.0962 41 1 6.3770 -2.1493 0.4779 42 1 4.4854 -1.6080 -1.4925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400342687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = 12.663335 kcal Electronic energy + Delta-G solvation = -18904.549347 eV Core-core repulsion = 16305.710307 eV Total energy + Delta-G solvation = -2598.839040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.31739 -37.18962 -32.76380 -32.01872 -29.90697 -29.39789 -27.79473 -26.49167 -25.87089 -22.64425 -21.72368 -20.72122 -20.32915 -18.13895 -16.43242 -15.61675 -15.52709 -15.11923 -14.54271 -14.19740 -13.57449 -13.21965 -13.10785 -12.74754 -12.46062 -12.08230 -11.72329 -11.65179 -11.55646 -11.23485 -11.14596 -11.02479 -10.98081 -10.83282 -10.67440 -10.46046 -10.31179 -10.17374 -10.11497 -9.70701 -9.16452 -8.99111 -8.32665 -7.99031 -7.01982 -5.94218 -3.92537 3.34882 3.43007 3.48260 4.41460 4.53244 4.83868 4.89736 5.07925 5.22628 5.39021 5.41046 5.59976 5.61860 5.67169 5.83066 5.88123 5.89163 5.99575 6.01154 6.07716 6.13254 6.18960 6.25660 6.33806 6.43460 6.48747 6.66014 6.72076 6.79225 6.96295 7.17103 7.26893 7.37584 7.47648 7.55691 7.89136 7.97080 8.26365 8.37413 8.69471 9.16878 9.70111 11.15998 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.007015 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.729979 B = 3990.464164 C = 4191.805079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.099 3.901 3 C -0.139 4.139 4 N -0.515 5.515 5 C 0.181 3.819 6 C -0.492 4.492 7 H 0.071 0.929 8 C 0.051 3.949 9 N -0.903 5.903 10 Si 0.890 3.110 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.287 1.287 14 C 0.075 3.925 15 H 0.071 0.929 16 C -0.183 4.183 17 C 0.094 3.906 18 H 0.078 0.922 19 C -0.150 4.150 20 C -0.140 4.140 21 C 0.045 3.955 22 N -0.664 5.664 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.043 -7.815 9.370 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.010 4.010 3 C -0.197 4.197 4 N -0.238 5.238 5 C 0.056 3.944 6 C -0.531 4.531 7 H 0.089 0.911 8 C -0.149 4.149 9 N -0.543 5.543 10 Si 0.718 3.282 11 H -0.196 1.196 12 H -0.213 1.213 13 H -0.213 1.213 14 C -0.035 4.035 15 H 0.089 0.911 16 C -0.243 4.243 17 C -0.016 4.016 18 H 0.096 0.904 19 C -0.190 4.190 20 C -0.179 4.179 21 C -0.085 4.085 22 N -0.294 5.294 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.496 -7.138 9.650 13.648 hybrid contribution -0.919 -0.227 -0.943 1.337 sum 5.577 -7.364 8.707 12.695 Atomic orbital electron populations 1.22895 0.98462 1.02770 1.01293 1.21300 0.91929 0.95431 0.92309 1.21935 1.01522 0.95908 1.00299 1.62395 1.52175 1.04252 1.04945 1.19953 0.91236 0.96762 0.86437 1.21354 1.14912 1.00235 1.16579 0.91131 1.24984 0.95393 0.97557 0.96943 1.69968 1.20084 1.37212 1.27068 0.86560 0.78093 0.84773 0.78739 1.19604 1.21295 1.21342 1.21948 0.92827 0.91602 0.97138 0.91096 1.22741 0.99625 1.00118 1.01768 1.22505 0.90066 0.90289 0.98742 0.90438 1.23241 0.95984 0.98351 1.01374 1.22781 0.96071 0.98380 1.00647 1.22647 0.94976 0.91923 0.98938 1.61643 1.01303 1.44154 1.22285 0.90296 0.94593 0.92087 0.92901 0.95249 0.92715 0.90199 0.96735 0.96727 0.93274 0.91847 0.91867 0.93638 0.91250 0.91526 0.91713 0.91497 0.93667 0.91478 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.74 7.18 37.15 0.27 -3.47 16 2 C 0.10 1.89 2.25 -67.72 -0.15 1.73 16 3 C -0.14 -2.72 8.46 37.15 0.31 -2.41 16 4 N -0.51 -10.42 3.95 -220.16 -0.87 -11.29 16 5 C 0.18 4.46 3.74 -4.98 -0.02 4.45 16 6 C -0.49 -13.27 7.34 -34.44 -0.25 -13.52 16 7 H 0.07 1.92 6.14 -52.49 -0.32 1.59 16 8 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 9 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 10 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 C 0.08 1.28 1.68 -67.71 -0.11 1.17 16 15 H 0.07 1.28 7.60 -51.93 -0.39 0.89 16 16 C -0.18 -2.88 7.23 37.16 0.27 -2.61 16 17 C 0.09 1.40 2.65 -66.19 -0.18 1.22 16 18 H 0.08 1.22 6.74 -51.93 -0.35 0.87 16 19 C -0.15 -1.84 5.83 -24.52 -0.14 -1.98 16 20 C -0.14 -1.56 6.94 -24.84 -0.17 -1.73 16 21 C 0.04 0.57 7.59 -2.83 -0.02 0.54 16 22 N -0.66 -10.28 7.08 -103.85 -0.74 -11.02 16 23 H 0.08 1.78 6.47 -51.93 -0.34 1.44 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 1.12 3.98 -51.93 -0.21 0.91 16 26 H 0.05 0.94 5.67 -51.93 -0.29 0.65 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.77 5.64 -51.92 -0.29 1.48 16 30 H 0.01 0.39 7.66 -51.93 -0.40 0.00 16 31 H 0.02 0.39 4.79 -51.93 -0.25 0.14 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 0.97 5.50 -51.93 -0.29 0.69 16 34 H 0.06 1.11 6.41 -51.93 -0.33 0.78 16 35 H 0.04 0.61 7.57 -51.93 -0.39 0.22 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.07 0.83 7.97 -51.92 -0.41 0.41 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.35 5.90 8.27 -39.29 -0.32 5.58 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -27.80 305.32 -8.69 -36.50 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.11 Total: 5.61 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -0.30 Total: -15.29 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.87 Total: -48.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.80 -8.69 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400342687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.160 kcal (2) G-P(sol) polarization free energy of solvation -27.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds