Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52990 * 109.47352 * 2 1 4 4 N 1.46901 * 109.46858 * 240.00358 * 2 1 3 5 5 C 1.46897 * 111.00425 * 36.22246 * 4 2 1 6 6 C 1.50701 * 109.46992 * 76.85228 * 5 4 2 7 7 H 1.07999 * 120.00031 * 5.20093 * 6 5 4 8 8 C 1.37877 * 119.99905 * 185.19019 * 6 5 4 9 9 N 1.31518 * 120.00415 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99859 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47028 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46906 * 120.00460 * 10 8 6 13 13 H 1.48494 * 109.47201 * 240.00419 * 10 8 6 14 14 C 1.46911 * 110.99965 * 272.26956 * 4 2 1 15 15 H 1.08997 * 109.47085 * 170.20286 * 14 4 2 16 16 C 1.52997 * 109.46993 * 50.20420 * 14 4 2 17 17 C 1.52994 * 109.46735 * 290.20240 * 14 4 2 18 18 H 1.09000 * 110.33597 * 67.72581 * 17 14 4 19 19 C 1.54911 * 110.37278 * 189.97288 * 17 14 4 20 20 C 1.55266 * 101.59933 * 155.81737 * 19 17 14 21 21 C 1.54319 * 103.08514 * 324.49359 * 20 19 17 22 22 N 1.47444 * 107.23229 * 22.20174 * 21 20 19 23 23 H 1.09006 * 109.47220 * 52.45977 * 1 2 3 24 24 H 1.09003 * 109.46706 * 292.46007 * 1 2 3 25 25 H 1.08999 * 109.47573 * 172.46109 * 1 2 3 26 26 H 1.09003 * 109.47250 * 120.00584 * 2 1 3 27 27 H 1.09007 * 109.47016 * 67.63975 * 3 2 1 28 28 H 1.09002 * 109.47459 * 187.63565 * 3 2 1 29 29 H 1.09007 * 109.47540 * 307.63852 * 3 2 1 30 30 H 1.08991 * 109.47686 * 196.85864 * 5 4 2 31 31 H 1.09002 * 109.46975 * 316.85761 * 5 4 2 32 32 H 0.96995 * 120.00223 * 179.97438 * 9 8 6 33 33 H 1.09007 * 109.47024 * 299.77468 * 16 14 4 34 34 H 1.08997 * 109.47403 * 59.77017 * 16 14 4 35 35 H 1.08999 * 109.47113 * 179.77542 * 16 14 4 36 36 H 1.08994 * 110.99714 * 273.99901 * 19 17 14 37 37 H 1.09008 * 110.98361 * 37.81222 * 19 17 14 38 38 H 1.09000 * 110.74336 * 206.05681 * 20 19 17 39 39 H 1.08998 * 110.75348 * 82.93413 * 20 19 17 40 40 H 1.08998 * 109.89190 * 262.79869 * 21 20 19 41 41 H 1.08996 * 109.88718 * 141.60851 * 21 20 19 42 42 H 1.00904 * 110.99954 * 238.71686 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0195 -0.6924 -1.1995 5 6 1.1520 -0.4231 -2.3539 6 6 1.4375 0.9578 -2.8855 7 1 2.2446 1.5411 -2.4676 8 6 0.6684 1.4764 -3.9056 9 7 -0.3146 0.7662 -4.4144 10 14 1.0228 3.1879 -4.5651 11 1 2.1722 3.7736 -3.8295 12 1 1.3522 3.1029 -6.0106 13 1 -0.1738 4.0473 -4.3797 14 6 2.1438 -2.1365 -0.9599 15 1 2.3384 -2.6460 -1.9036 16 6 0.8432 -2.6665 -0.3530 17 6 3.3006 -2.3952 0.0074 18 1 3.0600 -2.0085 0.9976 19 6 3.6128 -3.9107 0.0816 20 6 5.0967 -3.9017 0.5387 21 6 5.6757 -2.6642 -0.1787 22 7 4.5436 -1.7756 -0.4992 23 1 -0.3634 0.6262 -0.8149 24 1 -0.3633 0.3926 0.9498 25 1 -0.3634 -1.0187 -0.1348 26 1 1.8933 -0.5139 0.8899 27 1 1.7925 1.9153 0.9505 28 1 3.1214 1.4454 -0.1365 29 1 1.5694 1.9942 -0.8138 30 1 1.3454 -1.1598 -3.1335 31 1 0.1081 -0.4853 -2.0462 32 1 -0.8559 1.1312 -5.1318 33 1 0.6506 -2.1599 0.5927 34 1 0.0184 -2.4785 -1.0404 35 1 0.9339 -3.7387 -0.1790 36 1 2.9787 -4.4045 0.8178 37 1 3.5095 -4.3790 -0.8973 38 1 5.6062 -4.8090 0.2139 39 1 5.1669 -3.7881 1.6204 40 1 6.1790 -2.9691 -1.0962 41 1 6.3770 -2.1493 0.4779 42 1 4.4854 -1.6080 -1.4925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400342687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -5.993279 kcal Electronic energy + Delta-G solvation = -18905.358359 eV Core-core repulsion = 16305.710307 eV Total energy + Delta-G solvation = -2599.648052 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69306 -38.50621 -34.76428 -33.51839 -31.29595 -30.76909 -29.07454 -28.28547 -27.42590 -24.43310 -23.16583 -21.79736 -21.56655 -19.69216 -18.43114 -17.02176 -16.86736 -16.40499 -16.34498 -15.83695 -14.82659 -14.65519 -14.38944 -14.13203 -13.99545 -13.85181 -13.27352 -13.00223 -12.94258 -12.84039 -12.72687 -12.59779 -12.37853 -12.18251 -12.10250 -12.02286 -11.89803 -11.63309 -11.51767 -11.28157 -10.95416 -10.80152 -10.47625 -9.15166 -8.69680 -8.08082 -6.13421 1.40673 1.42854 1.55074 2.45681 3.20808 3.23449 3.65237 3.83225 3.89050 4.06080 4.24259 4.30690 4.35496 4.48908 4.56721 4.59609 4.67095 4.69105 4.82329 4.88468 4.94133 5.00141 5.06425 5.10009 5.14393 5.15950 5.22354 5.27334 5.33472 5.38665 5.47312 5.48845 5.65429 5.75208 5.86253 6.22209 6.29863 6.58640 6.66126 6.88583 7.04375 7.53836 9.01124 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.007015 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.729979 B = 3990.464164 C = 4191.805079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 C -0.133 4.133 4 N -0.519 5.519 5 C 0.200 3.800 6 C -0.494 4.494 7 H 0.067 0.933 8 C 0.000 4.000 9 N -0.938 5.938 10 Si 0.953 3.047 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.074 3.926 15 H 0.054 0.946 16 C -0.175 4.175 17 C 0.101 3.899 18 H 0.076 0.924 19 C -0.145 4.145 20 C -0.132 4.132 21 C 0.042 3.958 22 N -0.682 5.682 23 H 0.037 0.963 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.048 0.952 30 H -0.018 1.018 31 H -0.003 1.003 32 H 0.258 0.742 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -8.374 11.188 15.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.009 4.009 3 C -0.191 4.191 4 N -0.242 5.242 5 C 0.074 3.926 6 C -0.533 4.533 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.581 5.581 10 Si 0.779 3.221 11 H -0.189 1.189 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.035 4.035 15 H 0.072 0.928 16 C -0.234 4.234 17 C -0.010 4.010 18 H 0.094 0.906 19 C -0.184 4.184 20 C -0.170 4.170 21 C -0.088 4.088 22 N -0.311 5.311 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.001 0.999 31 H 0.015 0.985 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.089 0.911 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.571 -7.705 11.494 15.773 hybrid contribution -1.213 -0.086 -1.469 1.907 sum 6.358 -7.790 10.025 14.199 Atomic orbital electron populations 1.22775 0.98430 1.02369 1.00929 1.21366 0.91878 0.95289 0.92350 1.21845 1.00674 0.96067 1.00499 1.62278 1.50834 1.06787 1.04346 1.19557 0.90943 0.94825 0.87272 1.21626 1.14311 1.01098 1.16268 0.91525 1.25754 0.95337 1.01193 0.97423 1.70088 1.21208 1.38961 1.27799 0.85575 0.78070 0.80465 0.77996 1.18887 1.21041 1.20955 1.22007 0.94775 0.89363 0.97395 0.92756 1.22617 0.97652 1.01972 1.01149 1.22411 0.88804 0.92362 0.97374 0.90623 1.23203 0.97219 0.96117 1.01874 1.22752 0.94992 0.98268 1.00997 1.22728 0.94163 0.92326 0.99545 1.61669 1.02420 1.45669 1.21340 0.94419 0.92057 0.91574 0.90595 0.92563 0.93374 0.93309 0.99946 0.98525 0.93298 0.91012 0.94439 0.90913 0.89566 0.91827 0.89875 0.90568 0.93104 0.91130 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.05 7.18 71.98 0.52 -6.53 16 2 C 0.10 3.70 2.25 44.91 0.10 3.80 16 3 C -0.13 -5.11 8.46 71.98 0.61 -4.50 16 4 N -0.52 -21.23 3.95 -850.44 -3.36 -24.59 16 5 C 0.20 10.25 3.74 85.56 0.32 10.57 16 6 C -0.49 -27.41 7.34 25.60 0.19 -27.22 16 7 H 0.07 3.69 6.14 -2.91 -0.02 3.67 16 8 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 9 N -0.94 -56.56 13.29 21.45 0.28 -56.28 16 10 Si 0.95 45.08 29.54 68.60 2.03 47.11 16 11 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 C 0.07 2.50 1.68 44.91 0.08 2.58 16 15 H 0.05 2.00 7.60 -2.39 -0.02 1.98 16 16 C -0.17 -5.28 7.23 71.98 0.52 -4.76 16 17 C 0.10 2.80 2.65 45.39 0.12 2.92 16 18 H 0.08 2.16 6.74 -2.39 -0.02 2.15 16 19 C -0.14 -3.13 5.83 32.03 0.19 -2.94 16 20 C -0.13 -2.49 6.94 31.82 0.22 -2.27 16 21 C 0.04 0.96 7.59 86.65 0.66 1.62 16 22 N -0.68 -20.30 7.08 -482.47 -3.42 -23.72 16 23 H 0.04 1.73 6.47 -2.38 -0.02 1.71 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.07 2.40 3.98 -2.39 -0.01 2.40 16 26 H 0.08 2.52 5.67 -2.39 -0.01 2.50 16 27 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 2.17 5.64 -2.38 -0.01 2.16 16 30 H -0.02 -1.00 7.66 -2.39 -0.02 -1.01 16 31 H 0.00 -0.16 4.79 -2.39 -0.01 -0.17 16 32 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 33 H 0.07 2.04 5.50 -2.38 -0.01 2.03 16 34 H 0.04 1.32 6.41 -2.39 -0.02 1.30 16 35 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 36 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 37 H 0.06 1.43 7.97 -2.38 -0.02 1.41 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.34 11.37 8.27 -89.69 -0.74 10.63 16 Total: -1.00 -61.01 305.32 -0.23 -61.24 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.25 Total: 22.54 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.98 Total: -26.31 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -6.49 Total: -104.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -61.01 -0.23 -61.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400342687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.249 kcal (2) G-P(sol) polarization free energy of solvation -61.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds