Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46808 * 2 1 4 4 C 1.50698 * 109.47222 * 240.00544 * 2 1 3 5 5 H 1.08003 * 119.99457 * 239.99924 * 4 2 1 6 6 C 1.37878 * 120.00417 * 59.99336 * 4 2 1 7 7 N 1.31516 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47099 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46910 * 120.00278 * 8 6 4 11 11 H 1.48500 * 109.47165 * 240.00629 * 8 6 4 12 12 N 1.46899 * 109.46985 * 120.00182 * 2 1 3 13 13 C 1.46895 * 110.99939 * 58.95527 * 12 2 1 14 14 C 1.46904 * 110.99786 * 295.00163 * 12 2 1 15 15 H 1.08999 * 109.47116 * 63.23401 * 14 12 2 16 16 C 1.53004 * 109.47130 * 303.22988 * 14 12 2 17 17 C 1.52998 * 109.46948 * 183.23235 * 14 12 2 18 18 C 1.53118 * 109.52502 * 181.47266 * 17 14 12 19 19 C 1.53036 * 109.27854 * 182.50217 * 18 17 14 20 20 N 1.46852 * 109.57544 * 59.08557 * 19 18 17 21 21 C 1.46845 * 111.19850 * 298.29240 * 20 19 18 22 22 C 1.53046 * 109.52311 * 61.73745 * 21 20 19 23 23 H 1.08996 * 109.47248 * 299.99798 * 1 2 3 24 24 H 1.09004 * 109.47131 * 59.99900 * 1 2 3 25 25 H 1.09002 * 109.47022 * 179.97438 * 1 2 3 26 26 H 0.96994 * 119.99512 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47199 * 288.82643 * 13 12 2 28 28 H 1.09001 * 109.47098 * 48.83487 * 13 12 2 29 29 H 1.09001 * 109.46484 * 168.83216 * 13 12 2 30 30 H 1.08999 * 109.47458 * 300.00203 * 16 14 12 31 31 H 1.09005 * 109.46884 * 60.00490 * 16 14 12 32 32 H 1.08998 * 109.46805 * 179.97438 * 16 14 12 33 33 H 1.09000 * 109.52390 * 301.60474 * 17 14 12 34 34 H 1.09001 * 109.50670 * 302.38953 * 18 17 14 35 35 H 1.09008 * 109.49969 * 62.50070 * 18 17 14 36 36 H 1.09003 * 109.41260 * 299.07373 * 19 18 17 37 37 H 1.09004 * 109.46709 * 179.13302 * 19 18 17 38 38 H 1.00906 * 110.99216 * 62.38754 * 20 19 18 39 39 H 1.08994 * 109.46276 * 301.72608 * 21 20 19 40 40 H 1.08999 * 109.46213 * 181.75486 * 21 20 19 41 41 H 1.08999 * 109.49806 * 180.87996 * 22 21 20 42 42 H 1.09008 * 109.53144 * 60.78272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 3.1476 -2.2861 -3.6038 10 1 1.1679 -1.5864 -4.8165 11 1 3.1474 -0.1855 -4.8160 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 1 0.5627 0.0678 2.5082 16 6 2.1920 1.4673 2.3408 17 6 2.2431 -0.6674 3.6380 18 6 1.8266 0.0733 4.9117 19 6 2.4749 -0.6008 6.1231 20 7 3.9358 -0.5775 5.9759 21 6 4.3615 -1.3238 4.7850 22 6 3.7707 -0.6703 3.5335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1618 -3.4844 27 1 0.4601 -2.0752 1.4627 28 1 1.7034 -2.5563 0.2831 29 1 2.0570 -2.6233 2.0263 30 1 3.2779 1.4386 2.2507 31 1 1.7684 1.9707 1.4717 32 1 1.9163 2.0103 3.2448 33 1 1.8788 -1.6940 3.6778 34 1 2.1563 1.1106 4.8538 35 1 0.7418 0.0408 5.0133 36 1 2.1330 -1.6338 6.1889 37 1 2.1927 -0.0666 7.0303 38 1 4.2815 0.3702 5.9515 39 1 4.0108 -2.3533 4.8571 40 1 5.4495 -1.3146 4.7204 41 1 4.0741 -1.2338 2.6512 42 1 4.1320 0.3550 3.4527 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400581583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -3.468477 kcal Electronic energy + Delta-G solvation = -18763.066265 eV Core-core repulsion = 16163.527697 eV Total energy + Delta-G solvation = -2599.538568 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42210 -37.05000 -33.54171 -31.83086 -30.68243 -29.09113 -28.43982 -25.24123 -24.29021 -24.05971 -22.73507 -21.50423 -19.76849 -18.06943 -16.31149 -15.80016 -15.14638 -14.83490 -14.63463 -14.43174 -14.10818 -13.44245 -13.05947 -12.86718 -12.70047 -12.03532 -11.96344 -11.82088 -11.70672 -11.43517 -11.08251 -10.98117 -10.89214 -10.78210 -10.64126 -10.49257 -10.40324 -10.08443 -9.97234 -9.82478 -9.51934 -8.80612 -8.35251 -8.26130 -7.06855 -6.00077 -4.03008 3.29806 3.37834 3.42200 4.37583 4.41974 4.79918 4.93998 5.16902 5.24363 5.32395 5.36432 5.50210 5.51848 5.66168 5.83123 5.89491 5.97411 6.01236 6.07163 6.16855 6.21200 6.26098 6.32659 6.40541 6.58769 6.60096 6.67827 6.71316 6.85525 6.89870 6.93296 7.09416 7.18512 7.40160 7.55476 7.73948 7.86532 8.18236 8.43194 8.65571 9.03630 9.61791 11.07129 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.005986 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.157750 B = 4676.432311 C = 4925.138333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.207 3.793 3 H 0.045 0.955 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.527 5.527 13 C 0.034 3.966 14 C 0.085 3.915 15 H 0.030 0.970 16 C -0.146 4.146 17 C -0.077 4.077 18 C -0.154 4.154 19 C 0.059 3.941 20 N -0.689 5.689 21 C 0.054 3.946 22 C -0.142 4.142 23 H 0.006 0.994 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.259 0.741 27 H 0.010 0.990 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.337 0.663 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -1.493 13.481 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.101 3.899 3 H 0.063 0.937 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.251 5.251 13 C -0.115 4.115 14 C -0.024 4.024 15 H 0.048 0.952 16 C -0.203 4.203 17 C -0.096 4.096 18 C -0.194 4.194 19 C -0.071 4.071 20 N -0.317 5.317 21 C -0.076 4.076 22 C -0.181 4.181 23 H 0.025 0.975 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.154 0.846 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.946 -1.939 13.748 14.194 hybrid contribution -1.108 0.253 -1.691 2.037 sum 1.838 -1.686 12.058 12.313 Atomic orbital electron populations 1.22390 1.01180 0.99167 1.00321 1.19366 0.89504 0.95038 0.86028 0.93691 1.21182 1.30285 1.12342 0.89776 0.91975 1.24926 0.95300 0.95158 0.98974 1.69898 1.37260 1.23130 1.23191 0.86496 0.78515 0.79678 0.83042 1.19783 1.21246 1.21098 1.62358 1.59249 1.01565 1.01893 1.22237 0.96039 0.91519 1.01686 1.21513 0.96312 0.93829 0.90728 0.95243 1.21961 1.01803 0.95713 1.00821 1.21174 0.95886 0.99075 0.93432 1.22377 1.00848 1.00194 0.95989 1.21980 0.87524 1.00841 0.96780 1.60731 1.10893 1.19672 1.40415 1.22079 0.99578 0.97855 0.88072 1.22205 0.95180 1.01647 0.99071 0.97485 0.89534 0.95384 0.93143 0.97185 0.90641 0.93939 0.92063 0.91934 0.93653 0.91659 0.91673 0.92014 0.91354 0.91298 0.84574 0.91453 0.91196 0.89934 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.28 37.16 0.31 -3.86 16 2 C 0.21 5.11 2.02 -68.86 -0.14 4.97 16 3 H 0.05 1.22 5.97 -51.93 -0.31 0.91 16 4 C -0.50 -13.48 7.78 -34.44 -0.27 -13.75 16 5 H 0.06 1.70 6.83 -52.48 -0.36 1.34 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.46 11.32 55.43 0.63 -24.83 16 8 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.53 -10.97 3.97 -228.29 -0.91 -11.88 16 13 C 0.03 0.66 8.08 60.06 0.49 1.15 16 14 C 0.09 1.51 1.49 -67.71 -0.10 1.41 16 15 H 0.03 0.57 6.59 -51.93 -0.34 0.22 16 16 C -0.15 -2.49 8.16 37.16 0.30 -2.19 16 17 C -0.08 -1.11 1.73 -90.50 -0.16 -1.27 16 18 C -0.15 -1.88 5.11 -26.65 -0.14 -2.02 16 19 C 0.06 0.64 6.55 -3.83 -0.03 0.62 16 20 N -0.69 -7.78 6.87 -113.81 -0.78 -8.57 16 21 C 0.05 0.64 6.55 -3.83 -0.03 0.62 16 22 C -0.14 -1.98 4.86 -26.65 -0.13 -2.11 16 23 H 0.01 0.14 6.59 -51.93 -0.34 -0.20 16 24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 25 H 0.03 0.66 6.65 -51.93 -0.35 0.32 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.01 0.19 6.91 -51.93 -0.36 -0.17 16 28 H 0.07 1.61 6.26 -51.93 -0.32 1.29 16 29 H 0.04 0.73 6.67 -51.93 -0.35 0.38 16 30 H 0.06 1.05 6.34 -51.93 -0.33 0.72 16 31 H 0.06 1.22 6.25 -51.93 -0.32 0.89 16 32 H 0.04 0.66 6.42 -51.93 -0.33 0.33 16 33 H 0.07 0.99 6.47 -51.93 -0.34 0.66 16 34 H 0.06 0.79 6.35 -51.93 -0.33 0.46 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.34 3.51 8.86 -39.29 -0.35 3.16 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 1.33 7.74 -51.93 -0.40 0.93 16 42 H 0.06 0.88 6.27 -51.92 -0.33 0.56 16 LS Contribution 301.20 15.07 4.54 4.54 Total: -1.00 -27.50 301.20 -8.54 -36.04 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.02 Total: 3.35 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 0.02 Total: -14.96 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -1.06 Total: -45.27 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -27.50 -8.54 -36.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.572 kcal (2) G-P(sol) polarization free energy of solvation -27.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds