Wall clock time and date at job start Mon Mar 30 2020 03:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46808 * 2 1 4 4 C 1.50698 * 109.47222 * 240.00544 * 2 1 3 5 5 H 1.08003 * 119.99457 * 239.99924 * 4 2 1 6 6 C 1.37878 * 120.00417 * 59.99336 * 4 2 1 7 7 N 1.31516 * 119.99813 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00058 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47099 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46910 * 120.00278 * 8 6 4 11 11 H 1.48500 * 109.47165 * 240.00629 * 8 6 4 12 12 N 1.46899 * 109.46985 * 120.00182 * 2 1 3 13 13 C 1.46895 * 110.99939 * 58.95527 * 12 2 1 14 14 C 1.46904 * 110.99786 * 295.00163 * 12 2 1 15 15 H 1.08999 * 109.47116 * 63.23401 * 14 12 2 16 16 C 1.53004 * 109.47130 * 303.22988 * 14 12 2 17 17 C 1.52998 * 109.46948 * 183.23235 * 14 12 2 18 18 C 1.53118 * 109.52502 * 181.47266 * 17 14 12 19 19 C 1.53036 * 109.27854 * 182.50217 * 18 17 14 20 20 N 1.46852 * 109.57544 * 59.08557 * 19 18 17 21 21 C 1.46845 * 111.19850 * 298.29240 * 20 19 18 22 22 C 1.53046 * 109.52311 * 61.73745 * 21 20 19 23 23 H 1.08996 * 109.47248 * 299.99798 * 1 2 3 24 24 H 1.09004 * 109.47131 * 59.99900 * 1 2 3 25 25 H 1.09002 * 109.47022 * 179.97438 * 1 2 3 26 26 H 0.96994 * 119.99512 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47199 * 288.82643 * 13 12 2 28 28 H 1.09001 * 109.47098 * 48.83487 * 13 12 2 29 29 H 1.09001 * 109.46484 * 168.83216 * 13 12 2 30 30 H 1.08999 * 109.47458 * 300.00203 * 16 14 12 31 31 H 1.09005 * 109.46884 * 60.00490 * 16 14 12 32 32 H 1.08998 * 109.46805 * 179.97438 * 16 14 12 33 33 H 1.09000 * 109.52390 * 301.60474 * 17 14 12 34 34 H 1.09001 * 109.50670 * 302.38953 * 18 17 14 35 35 H 1.09008 * 109.49969 * 62.50070 * 18 17 14 36 36 H 1.09003 * 109.41260 * 299.07373 * 19 18 17 37 37 H 1.09004 * 109.46709 * 179.13302 * 19 18 17 38 38 H 1.00906 * 110.99216 * 62.38754 * 20 19 18 39 39 H 1.08994 * 109.46276 * 301.72608 * 21 20 19 40 40 H 1.08999 * 109.46213 * 181.75486 * 21 20 19 41 41 H 1.08999 * 109.49806 * 180.87996 * 22 21 20 42 42 H 1.09008 * 109.53144 * 60.78272 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 3.1476 -2.2861 -3.6038 10 1 1.1679 -1.5864 -4.8165 11 1 3.1474 -0.1855 -4.8160 12 7 2.0197 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 1 0.5627 0.0678 2.5082 16 6 2.1920 1.4673 2.3408 17 6 2.2431 -0.6674 3.6380 18 6 1.8266 0.0733 4.9117 19 6 2.4749 -0.6008 6.1231 20 7 3.9358 -0.5775 5.9759 21 6 4.3615 -1.3238 4.7850 22 6 3.7707 -0.6703 3.5335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7094 1.1618 -3.4844 27 1 0.4601 -2.0752 1.4627 28 1 1.7034 -2.5563 0.2831 29 1 2.0570 -2.6233 2.0263 30 1 3.2779 1.4386 2.2507 31 1 1.7684 1.9707 1.4717 32 1 1.9163 2.0103 3.2448 33 1 1.8788 -1.6940 3.6778 34 1 2.1563 1.1106 4.8538 35 1 0.7418 0.0408 5.0133 36 1 2.1330 -1.6338 6.1889 37 1 2.1927 -0.0666 7.0303 38 1 4.2815 0.3702 5.9515 39 1 4.0108 -2.3533 4.8571 40 1 5.4495 -1.3146 4.7204 41 1 4.0741 -1.2338 2.6512 42 1 4.1320 0.3550 3.4527 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400581583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:51 Heat of formation + Delta-G solvation = -21.608937 kcal Electronic energy + Delta-G solvation = -18763.852895 eV Core-core repulsion = 16163.527697 eV Total energy + Delta-G solvation = -2600.325197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68650 -38.49404 -35.24827 -33.48537 -31.68606 -30.60786 -30.08443 -27.31638 -25.93486 -25.34877 -23.73440 -22.83810 -21.19527 -19.54539 -18.31105 -17.13894 -16.62229 -16.39842 -16.08999 -15.58606 -15.27152 -14.98188 -14.70435 -14.44963 -13.89909 -13.55617 -13.32992 -13.13995 -13.00007 -12.95526 -12.92813 -12.60554 -12.57818 -12.36730 -12.15596 -12.11196 -11.99856 -11.73106 -11.23144 -11.15750 -11.03686 -10.82135 -10.44804 -9.21073 -8.77746 -8.10450 -6.20151 1.39978 1.42207 1.53548 2.42626 3.18909 3.35605 3.50226 3.79728 3.99948 4.11632 4.32253 4.36402 4.46234 4.51773 4.56006 4.58467 4.72150 4.75037 4.79761 4.84030 4.91603 4.94563 5.02461 5.05849 5.08099 5.16959 5.18867 5.21123 5.33129 5.34481 5.46878 5.58628 5.60886 5.73900 5.81118 6.16722 6.23908 6.53167 6.56945 6.82512 6.95260 7.48900 8.95960 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041036 B = 0.005986 C = 0.005684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.157750 B = 4676.432311 C = 4925.138333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.213 3.787 3 H 0.018 0.982 4 C -0.511 4.511 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.532 5.532 13 C 0.040 3.960 14 C 0.084 3.916 15 H 0.018 0.982 16 C -0.138 4.138 17 C -0.069 4.069 18 C -0.148 4.148 19 C 0.063 3.937 20 N -0.689 5.689 21 C 0.062 3.938 22 C -0.135 4.135 23 H 0.021 0.979 24 H 0.058 0.942 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.009 0.991 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.345 0.655 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -2.070 15.068 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.105 3.895 3 H 0.036 0.964 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.255 5.255 13 C -0.108 4.108 14 C -0.024 4.024 15 H 0.035 0.965 16 C -0.196 4.196 17 C -0.088 4.088 18 C -0.187 4.187 19 C -0.067 4.067 20 N -0.317 5.317 21 C -0.068 4.068 22 C -0.175 4.175 23 H 0.039 0.961 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.069 0.931 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.532 -2.519 15.356 15.957 hybrid contribution -1.293 0.453 -2.138 2.539 sum 2.239 -2.066 13.218 13.565 Atomic orbital electron populations 1.22189 1.01079 0.98711 0.99601 1.19103 0.89390 0.93742 0.87234 0.96440 1.21449 1.30208 1.12251 0.91048 0.92613 1.25675 0.95515 0.95840 1.01791 1.70023 1.38154 1.24290 1.23794 0.85521 0.78013 0.78666 0.79500 1.19245 1.20844 1.20783 1.62281 1.59273 1.02114 1.01870 1.22180 0.96302 0.90881 1.01433 1.21630 0.95847 0.94270 0.90664 0.96456 1.21894 1.01410 0.95424 1.00838 1.21103 0.96070 0.98694 0.92957 1.22333 1.01214 1.00076 0.95110 1.21993 0.87038 1.00911 0.96748 1.60734 1.11171 1.20196 1.39604 1.21993 1.00027 0.97599 0.87172 1.22128 0.94763 1.01306 0.99262 0.96055 0.92272 0.95513 0.93114 0.97272 0.92729 0.91272 0.92223 0.94956 0.90776 0.92065 0.91338 0.91678 0.91468 0.89398 0.83762 0.91572 0.90255 0.92345 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.28 71.98 0.60 -7.16 16 2 C 0.21 10.74 2.02 44.17 0.09 10.83 16 3 H 0.02 0.99 5.97 -2.38 -0.01 0.98 16 4 C -0.51 -28.17 7.78 25.60 0.20 -27.97 16 5 H 0.06 3.08 6.83 -2.91 -0.02 3.06 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 8 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.53 -22.23 3.97 -876.18 -3.48 -25.72 16 13 C 0.04 1.57 8.08 127.69 1.03 2.60 16 14 C 0.08 2.94 1.49 44.92 0.07 3.00 16 15 H 0.02 0.66 6.59 -2.39 -0.02 0.64 16 16 C -0.14 -4.68 8.16 71.98 0.59 -4.09 16 17 C -0.07 -1.89 1.73 -10.72 -0.02 -1.91 16 18 C -0.15 -3.19 5.11 30.65 0.16 -3.04 16 19 C 0.06 1.17 6.55 86.32 0.57 1.73 16 20 N -0.69 -13.44 6.87 -513.99 -3.53 -16.97 16 21 C 0.06 1.33 6.55 86.33 0.57 1.89 16 22 C -0.14 -3.56 4.86 30.65 0.15 -3.41 16 23 H 0.02 0.95 6.59 -2.39 -0.02 0.93 16 24 H 0.06 3.27 6.07 -2.38 -0.01 3.25 16 25 H 0.03 1.28 6.65 -2.39 -0.02 1.26 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.01 0.34 6.91 -2.39 -0.02 0.33 16 28 H 0.05 2.34 6.26 -2.39 -0.01 2.32 16 29 H 0.07 2.30 6.67 -2.39 -0.02 2.28 16 30 H 0.06 2.01 6.34 -2.39 -0.02 2.00 16 31 H 0.03 1.27 6.25 -2.38 -0.01 1.26 16 32 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 33 H 0.06 1.73 6.47 -2.39 -0.02 1.72 16 34 H 0.07 1.45 6.35 -2.39 -0.02 1.43 16 35 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.34 6.06 8.86 -89.69 -0.79 5.26 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 41 H 0.06 1.83 7.74 -2.39 -0.02 1.81 16 42 H 0.06 1.59 6.27 -2.38 -0.01 1.57 16 Total: -1.00 -59.00 301.20 -0.10 -59.10 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.21 Total: 17.20 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 4.44 Total: -26.52 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -6.77 Total: -95.89 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.00 -0.10 -59.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.488 kcal (2) G-P(sol) polarization free energy of solvation -58.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds