Wall clock time and date at job start Mon Mar 30 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47597 * 2 1 4 4 C 1.50699 * 109.47590 * 239.99978 * 2 1 3 5 5 H 1.08002 * 120.00188 * 239.99975 * 4 2 1 6 6 C 1.37884 * 119.99763 * 59.99893 * 4 2 1 7 7 N 1.31509 * 119.99918 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47141 * 90.00389 * 8 6 4 10 10 H 1.48496 * 109.46720 * 210.00055 * 8 6 4 11 11 H 1.48502 * 109.47219 * 330.00072 * 8 6 4 12 12 N 1.46904 * 109.47253 * 120.00226 * 2 1 3 13 13 C 1.46895 * 111.00139 * 170.96416 * 12 2 1 14 14 C 1.46899 * 110.99553 * 294.91390 * 12 2 1 15 15 H 1.09003 * 109.47507 * 33.83103 * 14 12 2 16 16 C 1.53006 * 109.47341 * 153.83302 * 14 12 2 17 17 C 1.52998 * 109.47324 * 273.83376 * 14 12 2 18 18 C 1.53118 * 109.52522 * 175.14859 * 17 14 12 19 19 C 1.53036 * 109.28271 * 182.43952 * 18 17 14 20 20 N 1.46847 * 109.52239 * 59.17521 * 19 18 17 21 21 C 1.46848 * 111.19937 * 298.26049 * 20 19 18 22 22 C 1.53044 * 109.52107 * 61.74322 * 21 20 19 23 23 H 1.09001 * 109.47084 * 65.04798 * 1 2 3 24 24 H 1.09001 * 109.47027 * 185.04568 * 1 2 3 25 25 H 1.08999 * 109.47532 * 305.04768 * 1 2 3 26 26 H 0.97005 * 119.99595 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46658 * 188.76529 * 13 12 2 28 28 H 1.09005 * 109.47148 * 308.75607 * 13 12 2 29 29 H 1.08998 * 109.47472 * 68.76462 * 13 12 2 30 30 H 1.08993 * 109.46679 * 65.02931 * 16 14 12 31 31 H 1.08993 * 109.47075 * 185.03608 * 16 14 12 32 32 H 1.09005 * 109.46448 * 305.03591 * 16 14 12 33 33 H 1.09002 * 109.52326 * 295.27182 * 17 14 12 34 34 H 1.08995 * 109.50904 * 62.49600 * 18 17 14 35 35 H 1.09005 * 109.53816 * 302.39814 * 18 17 14 36 36 H 1.08998 * 109.46040 * 299.16589 * 19 18 17 37 37 H 1.09000 * 109.46818 * 179.19285 * 19 18 17 38 38 H 1.00897 * 111.00375 * 62.36004 * 20 19 18 39 39 H 1.09001 * 109.46248 * 181.75395 * 21 20 19 40 40 H 1.09002 * 109.46413 * 301.72646 * 21 20 19 41 41 H 1.09004 * 109.49896 * 180.88188 * 22 21 20 42 42 H 1.08995 * 109.53579 * 60.78453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4120 10 1 2.4867 -0.1413 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 7 2.0196 -0.6926 1.1994 13 6 3.4720 -0.9015 1.1306 14 6 1.6504 0.0402 2.4179 15 1 0.6827 0.5207 2.2738 16 6 1.5654 -0.9352 3.5937 17 6 2.7091 1.1044 2.7137 18 6 2.2658 1.9480 3.9121 19 6 3.2987 3.0486 4.1651 20 7 3.4208 3.8913 2.9687 21 6 3.8909 3.1123 1.8161 22 6 2.8756 2.0137 1.4930 23 1 -0.3633 0.4335 -0.9318 24 1 -0.3633 -1.0237 0.0904 25 1 -0.3634 0.5901 0.8413 26 1 0.7096 1.1618 -3.4845 27 1 3.7852 -1.5487 1.9499 28 1 3.7271 -1.3699 0.1799 29 1 3.9815 0.0587 1.2109 30 1 2.5536 -1.3488 3.7947 31 1 1.2052 -0.4086 4.4773 32 1 0.8769 -1.7432 3.3463 33 1 3.6589 0.6201 2.9406 34 1 2.1868 1.3134 4.7947 35 1 1.2967 2.4002 3.7011 36 1 4.2642 2.5956 4.3903 37 1 2.9788 3.6600 5.0089 38 1 2.5482 4.3534 2.7612 39 1 4.0010 3.7699 0.9538 40 1 4.8536 2.6590 2.0524 41 1 3.2323 1.4258 0.6473 42 1 1.9161 2.4662 1.2428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400581584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:53 Heat of formation + Delta-G solvation = 12.177481 kcal Electronic energy + Delta-G solvation = -19145.771960 eV Core-core repulsion = 16546.911852 eV Total energy + Delta-G solvation = -2598.860108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70826 -36.71299 -33.52647 -31.63850 -30.49743 -29.41951 -28.79933 -25.51602 -24.19253 -23.51521 -22.60039 -21.19000 -19.69919 -18.64826 -16.38920 -15.96449 -15.16343 -14.57632 -14.50195 -14.38343 -13.86502 -13.56928 -12.93481 -12.73806 -12.64842 -12.15999 -11.90808 -11.73485 -11.56209 -11.36350 -11.05560 -10.96139 -10.87493 -10.72772 -10.59158 -10.39072 -10.15748 -10.04067 -9.90646 -9.79467 -9.56757 -8.76007 -8.39272 -8.26108 -6.88011 -6.00387 -4.04236 3.30159 3.36904 3.39586 4.40963 4.48783 4.91571 4.97759 5.18617 5.27345 5.33409 5.39182 5.59555 5.63909 5.71607 5.84777 5.94025 6.02568 6.03420 6.12931 6.21653 6.24451 6.30156 6.34771 6.39195 6.48975 6.70036 6.71691 6.76772 6.87690 6.94155 7.12948 7.18902 7.27622 7.50865 7.59431 7.80399 7.84621 8.27105 8.38845 8.67992 9.03173 9.60360 11.05660 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.007714 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.542860 B = 3628.712176 C = 4034.521190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.191 3.809 3 H 0.028 0.972 4 C -0.505 4.505 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.530 5.530 13 C 0.022 3.978 14 C 0.078 3.922 15 H 0.074 0.926 16 C -0.135 4.135 17 C -0.108 4.108 18 C -0.150 4.150 19 C 0.058 3.942 20 N -0.689 5.689 21 C 0.056 3.944 22 C -0.164 4.164 23 H 0.085 0.915 24 H 0.029 0.971 25 H 0.004 0.996 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.338 0.662 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 2.766 10.953 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 H 0.045 0.955 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.254 5.254 13 C -0.126 4.126 14 C -0.031 4.031 15 H 0.092 0.908 16 C -0.193 4.193 17 C -0.128 4.128 18 C -0.189 4.189 19 C -0.072 4.072 20 N -0.317 5.317 21 C -0.073 4.073 22 C -0.202 4.202 23 H 0.104 0.896 24 H 0.049 0.951 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.419 2.649 10.970 11.792 hybrid contribution -0.255 -0.284 -1.142 1.204 sum 3.164 2.364 9.828 10.592 Atomic orbital electron populations 1.21838 0.98323 0.98624 1.00274 1.19687 0.92104 0.93924 0.85747 0.95486 1.21261 1.30805 1.12254 0.90027 0.91954 1.24910 0.95277 0.95095 0.98899 1.69883 1.37005 1.23010 1.23280 0.86582 0.79202 0.79361 0.82753 1.20758 1.21378 1.20012 1.62308 1.12124 1.48596 1.02323 1.22484 0.89405 0.99165 1.01587 1.21759 0.97710 0.91986 0.91642 0.90785 1.21777 1.01254 0.99438 0.96788 1.21820 1.00205 0.96201 0.94560 1.22312 0.99327 0.98428 0.98877 1.21986 0.98696 0.93538 0.92968 1.60722 1.35345 1.30873 1.04800 1.22047 0.97970 0.94557 0.92716 1.22801 1.00070 0.98141 0.99212 0.89644 0.95142 0.97718 0.93078 0.94429 0.90464 0.95587 0.93529 0.93587 0.92400 0.91339 0.91699 0.92327 0.91422 0.91410 0.84514 0.90997 0.91543 0.88255 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.89 37.15 0.33 -2.91 16 2 C 0.19 4.62 1.63 -68.87 -0.11 4.50 16 3 H 0.03 0.70 4.00 -51.93 -0.21 0.49 16 4 C -0.50 -13.51 7.84 -34.44 -0.27 -13.78 16 5 H 0.06 1.68 6.07 -52.49 -0.32 1.36 16 6 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 7 N -0.89 -24.97 11.29 55.43 0.63 -24.35 16 8 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.53 -11.09 4.46 -228.30 -1.02 -12.10 16 13 C 0.02 0.42 8.03 60.06 0.48 0.91 16 14 C 0.08 1.38 1.96 -67.71 -0.13 1.25 16 15 H 0.07 1.42 5.83 -51.93 -0.30 1.12 16 16 C -0.13 -2.06 8.96 37.16 0.33 -1.73 16 17 C -0.11 -1.68 1.19 -90.50 -0.11 -1.79 16 18 C -0.15 -1.96 5.05 -26.65 -0.13 -2.09 16 19 C 0.06 0.71 6.55 -3.83 -0.03 0.68 16 20 N -0.69 -9.23 6.87 -113.81 -0.78 -10.01 16 21 C 0.06 0.84 6.55 -3.83 -0.03 0.81 16 22 C -0.16 -2.80 3.25 -26.65 -0.09 -2.89 16 23 H 0.09 2.29 5.95 -51.93 -0.31 1.98 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.00 0.09 6.38 -51.93 -0.33 -0.24 16 26 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.04 0.66 7.50 -51.93 -0.39 0.27 16 28 H 0.08 1.65 5.65 -51.93 -0.29 1.35 16 29 H 0.03 0.49 4.25 -51.93 -0.22 0.27 16 30 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 31 H 0.05 0.60 6.87 -51.93 -0.36 0.25 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.09 6.68 -51.93 -0.35 0.74 16 34 H 0.06 0.78 6.81 -51.93 -0.35 0.43 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.34 4.33 8.86 -39.29 -0.35 3.98 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.10 2.01 4.06 -51.93 -0.21 1.80 16 42 H 0.06 1.18 7.65 -51.93 -0.40 0.79 16 LS Contribution 298.07 15.07 4.49 4.49 Total: -1.00 -27.03 298.07 -8.42 -35.45 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -6.87 Total: 5.87 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 0.16 Total: -15.51 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -1.17 Total: -46.46 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.03 -8.42 -35.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.629 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds