Wall clock time and date at job start Mon Mar 30 2020 03:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47597 * 2 1 4 4 C 1.50699 * 109.47590 * 239.99978 * 2 1 3 5 5 H 1.08002 * 120.00188 * 239.99975 * 4 2 1 6 6 C 1.37884 * 119.99763 * 59.99893 * 4 2 1 7 7 N 1.31509 * 119.99918 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99710 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47141 * 90.00389 * 8 6 4 10 10 H 1.48496 * 109.46720 * 210.00055 * 8 6 4 11 11 H 1.48502 * 109.47219 * 330.00072 * 8 6 4 12 12 N 1.46904 * 109.47253 * 120.00226 * 2 1 3 13 13 C 1.46895 * 111.00139 * 170.96416 * 12 2 1 14 14 C 1.46899 * 110.99553 * 294.91390 * 12 2 1 15 15 H 1.09003 * 109.47507 * 33.83103 * 14 12 2 16 16 C 1.53006 * 109.47341 * 153.83302 * 14 12 2 17 17 C 1.52998 * 109.47324 * 273.83376 * 14 12 2 18 18 C 1.53118 * 109.52522 * 175.14859 * 17 14 12 19 19 C 1.53036 * 109.28271 * 182.43952 * 18 17 14 20 20 N 1.46847 * 109.52239 * 59.17521 * 19 18 17 21 21 C 1.46848 * 111.19937 * 298.26049 * 20 19 18 22 22 C 1.53044 * 109.52107 * 61.74322 * 21 20 19 23 23 H 1.09001 * 109.47084 * 65.04798 * 1 2 3 24 24 H 1.09001 * 109.47027 * 185.04568 * 1 2 3 25 25 H 1.08999 * 109.47532 * 305.04768 * 1 2 3 26 26 H 0.97005 * 119.99595 * 179.97438 * 7 6 4 27 27 H 1.09005 * 109.46658 * 188.76529 * 13 12 2 28 28 H 1.09005 * 109.47148 * 308.75607 * 13 12 2 29 29 H 1.08998 * 109.47472 * 68.76462 * 13 12 2 30 30 H 1.08993 * 109.46679 * 65.02931 * 16 14 12 31 31 H 1.08993 * 109.47075 * 185.03608 * 16 14 12 32 32 H 1.09005 * 109.46448 * 305.03591 * 16 14 12 33 33 H 1.09002 * 109.52326 * 295.27182 * 17 14 12 34 34 H 1.08995 * 109.50904 * 62.49600 * 18 17 14 35 35 H 1.09005 * 109.53816 * 302.39814 * 18 17 14 36 36 H 1.08998 * 109.46040 * 299.16589 * 19 18 17 37 37 H 1.09000 * 109.46818 * 179.19285 * 19 18 17 38 38 H 1.00897 * 111.00375 * 62.36004 * 20 19 18 39 39 H 1.09001 * 109.46248 * 181.75395 * 21 20 19 40 40 H 1.09002 * 109.46413 * 301.72646 * 21 20 19 41 41 H 1.09004 * 109.49896 * 180.88188 * 22 21 20 42 42 H 1.08995 * 109.53579 * 60.78453 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1617 -4.4120 10 1 2.4867 -0.1413 -5.1122 11 1 3.6295 -1.7583 -3.7121 12 7 2.0196 -0.6926 1.1994 13 6 3.4720 -0.9015 1.1306 14 6 1.6504 0.0402 2.4179 15 1 0.6827 0.5207 2.2738 16 6 1.5654 -0.9352 3.5937 17 6 2.7091 1.1044 2.7137 18 6 2.2658 1.9480 3.9121 19 6 3.2987 3.0486 4.1651 20 7 3.4208 3.8913 2.9687 21 6 3.8909 3.1123 1.8161 22 6 2.8756 2.0137 1.4930 23 1 -0.3633 0.4335 -0.9318 24 1 -0.3633 -1.0237 0.0904 25 1 -0.3634 0.5901 0.8413 26 1 0.7096 1.1618 -3.4845 27 1 3.7852 -1.5487 1.9499 28 1 3.7271 -1.3699 0.1799 29 1 3.9815 0.0587 1.2109 30 1 2.5536 -1.3488 3.7947 31 1 1.2052 -0.4086 4.4773 32 1 0.8769 -1.7432 3.3463 33 1 3.6589 0.6201 2.9406 34 1 2.1868 1.3134 4.7947 35 1 1.2967 2.4002 3.7011 36 1 4.2642 2.5956 4.3903 37 1 2.9788 3.6600 5.0089 38 1 2.5482 4.3534 2.7612 39 1 4.0010 3.7699 0.9538 40 1 4.8536 2.6590 2.0524 41 1 3.2323 1.4258 0.6473 42 1 1.9161 2.4662 1.2428 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400581584.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:53 Heat of formation + Delta-G solvation = -6.064533 kcal Electronic energy + Delta-G solvation = -19146.562993 eV Core-core repulsion = 16546.911852 eV Total energy + Delta-G solvation = -2599.651141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.08286 -38.11517 -35.32273 -33.23237 -31.76401 -31.00315 -30.29384 -27.41867 -25.87612 -24.83380 -23.78161 -22.72063 -21.09722 -20.17812 -18.31241 -17.39217 -16.81710 -16.08028 -15.90193 -15.70956 -15.43718 -14.84064 -14.42612 -14.36124 -13.97965 -13.58279 -13.38787 -13.38139 -12.95590 -12.82671 -12.68882 -12.56797 -12.50057 -12.19567 -12.06238 -11.95062 -11.87532 -11.81459 -11.47228 -11.27546 -11.07395 -10.65695 -10.45620 -9.42408 -8.51062 -8.07887 -6.17757 1.40154 1.41789 1.50678 2.42845 3.19881 3.40383 3.48992 3.71356 3.93883 4.08064 4.22689 4.33771 4.44470 4.52417 4.59011 4.64041 4.69349 4.84288 4.87261 4.89993 4.93292 4.99754 5.03047 5.06627 5.11432 5.14269 5.17011 5.23272 5.30217 5.36870 5.46373 5.55506 5.63543 5.81167 5.89487 6.09081 6.32289 6.45194 6.52121 6.90385 7.00663 7.50497 8.96769 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027950 B = 0.007714 C = 0.006938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.542860 B = 3628.712176 C = 4034.521190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.196 3.804 3 H 0.015 0.985 4 C -0.518 4.518 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.951 3.049 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.541 5.541 13 C 0.028 3.972 14 C 0.076 3.924 15 H 0.055 0.945 16 C -0.127 4.127 17 C -0.099 4.099 18 C -0.142 4.142 19 C 0.060 3.940 20 N -0.688 5.688 21 C 0.065 3.935 22 C -0.154 4.154 23 H 0.059 0.941 24 H 0.021 0.979 25 H 0.020 0.980 26 H 0.259 0.741 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.341 0.659 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.908 2.714 12.810 13.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.032 0.968 4 C -0.557 4.557 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.777 3.223 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.265 5.265 13 C -0.120 4.120 14 C -0.033 4.033 15 H 0.074 0.926 16 C -0.184 4.184 17 C -0.119 4.119 18 C -0.181 4.181 19 C -0.070 4.070 20 N -0.316 5.316 21 C -0.065 4.065 22 C -0.193 4.193 23 H 0.077 0.923 24 H 0.040 0.960 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.158 0.842 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.248 2.593 12.849 13.779 hybrid contribution -0.526 -0.258 -1.679 1.778 sum 3.722 2.334 11.170 12.003 Atomic orbital electron populations 1.21675 0.98795 0.97986 0.99542 1.19475 0.91637 0.93272 0.86637 0.96814 1.21569 1.30604 1.12109 0.91387 0.92603 1.25612 0.95573 0.95800 1.01550 1.70004 1.37943 1.24145 1.23711 0.85663 0.78783 0.78290 0.79514 1.20589 1.21064 1.19434 1.62249 1.12951 1.48917 1.02338 1.22412 0.88709 0.99683 1.01175 1.21842 0.97350 0.93017 0.91105 0.92640 1.21710 1.01643 0.98667 0.96414 1.21710 0.99603 0.95666 0.94937 1.22259 0.99258 0.98554 0.98073 1.22068 0.98664 0.93365 0.92880 1.60738 1.35644 1.30703 1.04565 1.21919 0.97420 0.93789 0.93344 1.22610 0.99260 0.98631 0.98776 0.92256 0.95969 0.96080 0.93183 0.92028 0.92890 0.95025 0.92674 0.90907 0.93472 0.90956 0.89718 0.92845 0.90965 0.89130 0.84157 0.91557 0.90969 0.91808 0.94374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.10 8.89 71.98 0.64 -5.46 16 2 C 0.20 9.72 1.63 44.17 0.07 9.79 16 3 H 0.01 0.76 4.00 -2.39 -0.01 0.75 16 4 C -0.52 -28.32 7.84 25.60 0.20 -28.12 16 5 H 0.06 3.07 6.07 -2.91 -0.02 3.05 16 6 C 0.01 0.72 5.29 84.66 0.45 1.17 16 7 N -0.92 -52.62 11.29 21.45 0.24 -52.37 16 8 Si 0.95 43.99 29.54 68.60 2.03 46.01 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.54 -22.58 4.46 -876.19 -3.91 -26.49 16 13 C 0.03 1.09 8.03 127.69 1.03 2.11 16 14 C 0.08 2.58 1.96 44.92 0.09 2.67 16 15 H 0.06 2.10 5.83 -2.39 -0.01 2.08 16 16 C -0.13 -3.53 8.96 71.98 0.65 -2.89 16 17 C -0.10 -2.93 1.19 -10.72 -0.01 -2.94 16 18 C -0.14 -3.28 5.05 30.65 0.15 -3.12 16 19 C 0.06 1.26 6.55 86.33 0.57 1.82 16 20 N -0.69 -17.00 6.87 -513.99 -3.53 -20.53 16 21 C 0.07 1.87 6.55 86.33 0.57 2.43 16 22 C -0.15 -5.27 3.25 30.65 0.10 -5.17 16 23 H 0.06 3.28 5.95 -2.39 -0.01 3.26 16 24 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.02 0.94 6.38 -2.39 -0.02 0.92 16 26 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 27 H 0.06 2.04 7.50 -2.38 -0.02 2.03 16 28 H 0.05 2.28 5.65 -2.38 -0.01 2.26 16 29 H 0.03 1.17 4.25 -2.39 -0.01 1.16 16 30 H 0.05 1.44 7.53 -2.39 -0.02 1.43 16 31 H 0.07 1.64 6.87 -2.39 -0.02 1.63 16 32 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.07 2.11 6.68 -2.39 -0.02 2.10 16 34 H 0.08 1.67 6.81 -2.39 -0.02 1.65 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.34 8.18 8.86 -89.70 -0.79 7.38 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 2.66 4.06 -2.38 -0.01 2.65 16 42 H 0.04 1.47 7.65 -2.39 -0.02 1.45 16 Total: -1.00 -58.44 298.07 -0.47 -58.91 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.21 Total: 22.18 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 4.49 Total: -27.70 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -7.20 Total: -99.39 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -58.44 -0.47 -58.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581584.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.845 kcal (2) G-P(sol) polarization free energy of solvation -58.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds