Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47627 * 2 1 4 4 C 1.50697 * 109.46989 * 120.00856 * 2 1 3 5 5 H 1.07997 * 120.00242 * 119.99960 * 4 2 1 6 6 C 1.37874 * 120.00006 * 299.99197 * 4 2 1 7 7 N 1.31513 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47446 * 120.00231 * 8 6 4 11 11 H 1.48506 * 109.46734 * 240.00449 * 8 6 4 12 12 N 1.46904 * 109.46544 * 240.00303 * 2 1 3 13 13 C 1.46901 * 111.00463 * 306.04635 * 12 2 1 14 14 C 1.46899 * 111.00029 * 70.00452 * 12 2 1 15 15 H 1.09002 * 109.47043 * 299.99792 * 14 12 2 16 16 C 1.53002 * 109.47394 * 59.99847 * 14 12 2 17 17 C 1.52997 * 109.47254 * 179.97438 * 14 12 2 18 18 C 1.53123 * 109.52400 * 299.68161 * 17 14 12 19 19 C 1.53034 * 109.28006 * 182.43744 * 18 17 14 20 20 N 1.46852 * 109.52090 * 59.18085 * 19 18 17 21 21 C 1.46845 * 111.19865 * 298.25558 * 20 19 18 22 22 C 1.53040 * 109.52289 * 61.74152 * 21 20 19 23 23 H 1.08997 * 109.47580 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46928 * 299.99783 * 1 2 3 25 25 H 1.08997 * 109.47197 * 59.99212 * 1 2 3 26 26 H 0.97002 * 120.00107 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47290 * 183.95387 * 13 12 2 28 28 H 1.09001 * 109.47028 * 303.95620 * 13 12 2 29 29 H 1.09001 * 109.46536 * 63.95310 * 13 12 2 30 30 H 1.09000 * 109.46986 * 300.00133 * 16 14 12 31 31 H 1.09002 * 109.47075 * 59.99404 * 16 14 12 32 32 H 1.08996 * 109.47407 * 180.02562 * 16 14 12 33 33 H 1.09003 * 109.52551 * 59.86824 * 17 14 12 34 34 H 1.08997 * 109.50128 * 302.38500 * 18 17 14 35 35 H 1.09006 * 109.49967 * 62.49852 * 18 17 14 36 36 H 1.08997 * 109.46688 * 299.16552 * 19 18 17 37 37 H 1.08997 * 109.46419 * 179.19614 * 19 18 17 38 38 H 1.00906 * 110.99416 * 174.15913 * 20 19 18 39 39 H 1.09002 * 109.45973 * 301.73115 * 21 20 19 40 40 H 1.08996 * 109.46113 * 181.75658 * 21 20 19 41 41 H 1.09000 * 109.50403 * 180.88228 * 22 21 20 42 42 H 1.09002 * 109.50045 * 60.76157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6531 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9429 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1472 -2.2868 3.6035 10 1 3.1473 -0.1864 4.8160 11 1 1.1676 -1.5870 4.8162 12 7 2.0195 -0.6925 -1.1995 13 6 1.4341 -2.0354 -1.3080 14 6 1.7528 0.0974 -2.4091 15 1 0.6790 0.2553 -2.5104 16 6 2.4593 1.4502 -2.3009 17 6 2.2762 -0.6542 -3.6347 18 6 3.7860 -0.8692 -3.4969 19 6 4.3136 -1.5669 -4.7525 20 7 4.0244 -0.7404 -5.9314 21 6 2.5783 -0.5597 -6.1114 22 6 1.9987 0.1681 -4.8962 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7083 1.1606 3.4844 27 1 1.8661 -2.5520 -2.1651 28 1 1.6464 -2.5988 -0.3994 29 1 0.3554 -1.9519 -1.4400 30 1 2.0868 1.9858 -1.4277 31 1 3.5330 1.2923 -2.1995 32 1 2.2610 2.0364 -3.1982 33 1 1.7754 -1.6193 -3.7115 34 1 4.2816 0.0946 -3.3805 35 1 3.9869 -1.4902 -2.6239 36 1 3.8276 -2.5365 -4.8607 37 1 5.3907 -1.7087 -4.6638 38 1 4.4457 -1.1327 -6.7602 39 1 2.1004 -1.5341 -6.2130 40 1 2.3950 0.0302 -7.0094 41 1 0.9228 0.2882 -5.0229 42 1 2.4663 1.1482 -4.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400581585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = 0.202973 kcal Electronic energy + Delta-G solvation = -18735.514670 eV Core-core repulsion = 16136.135308 eV Total energy + Delta-G solvation = -2599.379362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26158 -36.93921 -33.60656 -31.89631 -30.61287 -29.13099 -28.45982 -25.21449 -24.27364 -24.15518 -22.77665 -21.14281 -19.38314 -17.90825 -16.50769 -16.20837 -15.19377 -14.70754 -14.57661 -14.34269 -13.94749 -13.53148 -12.99162 -12.78863 -12.67766 -12.42256 -11.94160 -11.68284 -11.56172 -11.30621 -11.04934 -10.96859 -10.75001 -10.65570 -10.62162 -10.38039 -10.20862 -10.04378 -9.93480 -9.69282 -9.35400 -8.78019 -8.42756 -8.30680 -7.01511 -5.95980 -3.98597 3.32469 3.40371 3.44956 4.26761 4.45020 4.88302 5.02047 5.11524 5.28041 5.36109 5.39076 5.54419 5.63235 5.67328 5.85639 5.90959 5.94915 6.07989 6.15225 6.21925 6.29381 6.33720 6.40836 6.46396 6.68424 6.68740 6.73626 6.77698 6.89314 6.95003 7.00860 7.10054 7.22791 7.39328 7.58067 7.77548 7.91784 8.24707 8.47188 8.69780 9.08136 9.66037 11.11193 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.005982 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.603804 B = 4679.682993 C = 4932.649082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.206 3.794 3 H 0.046 0.954 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.526 5.526 13 C 0.033 3.967 14 C 0.085 3.915 15 H 0.029 0.971 16 C -0.145 4.145 17 C -0.080 4.080 18 C -0.103 4.103 19 C 0.056 3.944 20 N -0.690 5.690 21 C 0.061 3.939 22 C -0.115 4.115 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.005 0.995 26 H 0.258 0.742 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.013 0.987 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.069 0.931 38 H 0.335 0.665 39 H 0.024 0.976 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -2.794 -14.474 14.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.100 3.900 3 H 0.064 0.936 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.213 1.213 12 N -0.250 5.250 13 C -0.116 4.116 14 C -0.024 4.024 15 H 0.047 0.953 16 C -0.202 4.202 17 C -0.099 4.099 18 C -0.141 4.141 19 C -0.073 4.073 20 N -0.321 5.321 21 C -0.069 4.069 22 C -0.153 4.153 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.107 -2.142 -13.933 14.435 hybrid contribution -1.029 -1.260 0.493 1.700 sum 2.077 -3.402 -13.440 14.019 Atomic orbital electron populations 1.22388 1.01203 0.99203 1.00281 1.19377 0.89504 0.95033 0.86089 0.93639 1.21166 1.30090 1.12264 0.89716 0.92050 1.24923 0.95371 0.95184 0.98943 1.69898 1.37344 1.23216 1.23124 0.86501 0.78483 0.79676 0.83089 1.19811 1.21132 1.21305 1.62376 1.58510 1.02031 1.02110 1.22246 0.96002 0.92365 1.00944 1.21490 0.96566 0.93736 0.90561 0.95329 1.21949 1.01444 0.95990 1.00797 1.21232 0.96631 0.98279 0.93747 1.21566 0.94834 1.01697 0.95954 1.22024 1.00090 0.93788 0.91413 1.60302 1.11879 1.53585 1.06336 1.21894 0.87900 0.98544 0.98534 1.21719 0.99703 1.00064 0.93852 0.95224 0.89525 0.97573 0.93190 0.93844 0.91124 0.96873 0.92106 0.91918 0.93431 0.92082 0.91046 0.90155 0.95837 0.91251 0.84803 0.95756 0.91355 0.92209 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.22 37.16 0.31 -3.90 16 2 C 0.21 5.14 2.12 -68.87 -0.15 4.99 16 3 H 0.05 1.24 5.83 -51.93 -0.30 0.94 16 4 C -0.49 -13.49 7.91 -34.44 -0.27 -13.77 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.64 11.32 55.43 0.63 -25.01 16 8 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.53 -11.08 3.87 -228.30 -0.88 -11.97 16 13 C 0.03 0.65 8.24 60.07 0.49 1.14 16 14 C 0.09 1.54 1.69 -67.71 -0.11 1.43 16 15 H 0.03 0.56 6.62 -51.93 -0.34 0.21 16 16 C -0.14 -2.54 8.28 37.16 0.31 -2.24 16 17 C -0.08 -1.20 1.59 -90.50 -0.14 -1.35 16 18 C -0.10 -1.52 4.89 -26.65 -0.13 -1.65 16 19 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 20 N -0.69 -7.94 6.85 -113.82 -0.78 -8.72 16 21 C 0.06 0.69 6.55 -3.83 -0.03 0.66 16 22 C -0.12 -1.50 5.09 -26.65 -0.14 -1.64 16 23 H 0.03 0.70 6.41 -51.93 -0.33 0.37 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.01 0.12 6.69 -51.93 -0.35 -0.23 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.04 0.74 6.23 -51.93 -0.32 0.42 16 28 H 0.07 1.49 6.76 -51.93 -0.35 1.14 16 29 H 0.01 0.26 6.46 -51.93 -0.34 -0.08 16 30 H 0.06 1.20 6.20 -51.93 -0.32 0.88 16 31 H 0.06 1.11 6.37 -51.93 -0.33 0.78 16 32 H 0.05 0.72 6.38 -51.93 -0.33 0.39 16 33 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 34 H 0.07 1.12 6.30 -51.93 -0.33 0.80 16 35 H 0.08 1.32 7.70 -51.93 -0.40 0.92 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.34 3.12 8.90 -39.29 -0.35 2.77 16 39 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.02 6.31 -51.93 -0.33 0.69 16 LS Contribution 301.05 15.07 4.54 4.54 Total: -1.00 -28.03 301.05 -8.49 -36.52 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.99 Total: 2.37 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 0.02 Total: -14.18 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -1.04 Total: -45.70 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.03 -8.49 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.723 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds