Wall clock time and date at job start Mon Mar 30 2020 03:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47627 * 2 1 4 4 C 1.50697 * 109.46989 * 120.00856 * 2 1 3 5 5 H 1.07997 * 120.00242 * 119.99960 * 4 2 1 6 6 C 1.37874 * 120.00006 * 299.99197 * 4 2 1 7 7 N 1.31513 * 119.99732 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00282 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46887 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47446 * 120.00231 * 8 6 4 11 11 H 1.48506 * 109.46734 * 240.00449 * 8 6 4 12 12 N 1.46904 * 109.46544 * 240.00303 * 2 1 3 13 13 C 1.46901 * 111.00463 * 306.04635 * 12 2 1 14 14 C 1.46899 * 111.00029 * 70.00452 * 12 2 1 15 15 H 1.09002 * 109.47043 * 299.99792 * 14 12 2 16 16 C 1.53002 * 109.47394 * 59.99847 * 14 12 2 17 17 C 1.52997 * 109.47254 * 179.97438 * 14 12 2 18 18 C 1.53123 * 109.52400 * 299.68161 * 17 14 12 19 19 C 1.53034 * 109.28006 * 182.43744 * 18 17 14 20 20 N 1.46852 * 109.52090 * 59.18085 * 19 18 17 21 21 C 1.46845 * 111.19865 * 298.25558 * 20 19 18 22 22 C 1.53040 * 109.52289 * 61.74152 * 21 20 19 23 23 H 1.08997 * 109.47580 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46928 * 299.99783 * 1 2 3 25 25 H 1.08997 * 109.47197 * 59.99212 * 1 2 3 26 26 H 0.97002 * 120.00107 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47290 * 183.95387 * 13 12 2 28 28 H 1.09001 * 109.47028 * 303.95620 * 13 12 2 29 29 H 1.09001 * 109.46536 * 63.95310 * 13 12 2 30 30 H 1.09000 * 109.46986 * 300.00133 * 16 14 12 31 31 H 1.09002 * 109.47075 * 59.99404 * 16 14 12 32 32 H 1.08996 * 109.47407 * 180.02562 * 16 14 12 33 33 H 1.09003 * 109.52551 * 59.86824 * 17 14 12 34 34 H 1.08997 * 109.50128 * 302.38500 * 18 17 14 35 35 H 1.09006 * 109.49967 * 62.49852 * 18 17 14 36 36 H 1.08997 * 109.46688 * 299.16552 * 19 18 17 37 37 H 1.08997 * 109.46419 * 179.19614 * 19 18 17 38 38 H 1.00906 * 110.99416 * 174.15913 * 20 19 18 39 39 H 1.09002 * 109.45973 * 301.73115 * 21 20 19 40 40 H 1.08996 * 109.46113 * 181.75658 * 21 20 19 41 41 H 1.09000 * 109.50403 * 180.88228 * 22 21 20 42 42 H 1.09002 * 109.50045 * 60.76157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.6531 -1.5887 1.1312 6 6 1.6993 -0.2396 2.4826 7 7 0.9429 0.8294 2.6034 8 14 2.3225 -1.1200 4.0078 9 1 3.1472 -2.2868 3.6035 10 1 3.1473 -0.1864 4.8160 11 1 1.1676 -1.5870 4.8162 12 7 2.0195 -0.6925 -1.1995 13 6 1.4341 -2.0354 -1.3080 14 6 1.7528 0.0974 -2.4091 15 1 0.6790 0.2553 -2.5104 16 6 2.4593 1.4502 -2.3009 17 6 2.2762 -0.6542 -3.6347 18 6 3.7860 -0.8692 -3.4969 19 6 4.3136 -1.5669 -4.7525 20 7 4.0244 -0.7404 -5.9314 21 6 2.5783 -0.5597 -6.1114 22 6 1.9987 0.1681 -4.8962 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7083 1.1606 3.4844 27 1 1.8661 -2.5520 -2.1651 28 1 1.6464 -2.5988 -0.3994 29 1 0.3554 -1.9519 -1.4400 30 1 2.0868 1.9858 -1.4277 31 1 3.5330 1.2923 -2.1995 32 1 2.2610 2.0364 -3.1982 33 1 1.7754 -1.6193 -3.7115 34 1 4.2816 0.0946 -3.3805 35 1 3.9869 -1.4902 -2.6239 36 1 3.8276 -2.5365 -4.8607 37 1 5.3907 -1.7087 -4.6638 38 1 4.4457 -1.1327 -6.7602 39 1 2.1004 -1.5341 -6.2130 40 1 2.3950 0.0302 -7.0094 41 1 0.9228 0.2882 -5.0229 42 1 2.4663 1.1482 -4.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400581585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:54 Heat of formation + Delta-G solvation = -18.351873 kcal Electronic energy + Delta-G solvation = -18736.319269 eV Core-core repulsion = 16136.135308 eV Total energy + Delta-G solvation = -2600.183961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57786 -38.36914 -35.28707 -33.59372 -31.65143 -30.54531 -30.25804 -27.30408 -25.94310 -25.47495 -23.80784 -22.60455 -20.81865 -19.35374 -18.28282 -17.47657 -16.93909 -16.42028 -15.93972 -15.56534 -15.31587 -14.82693 -14.60591 -14.35859 -13.92574 -13.88357 -13.44791 -13.10131 -12.96014 -12.94448 -12.77860 -12.67421 -12.41618 -12.34828 -12.21364 -12.02822 -11.89084 -11.66758 -11.17888 -11.02337 -10.86612 -10.79710 -10.41558 -9.31189 -8.74102 -8.07829 -6.17473 1.41277 1.43366 1.54909 2.44495 3.21246 3.39468 3.40332 3.87675 3.94472 4.10985 4.39244 4.42957 4.49545 4.52271 4.57793 4.59706 4.74604 4.80429 4.83120 4.85840 4.89237 4.94155 5.00808 5.05230 5.09216 5.17869 5.19907 5.23816 5.37628 5.41599 5.50134 5.60851 5.68849 5.75804 5.84789 6.15872 6.28304 6.57192 6.62005 6.84736 6.97476 7.51495 8.98409 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.040711 B = 0.005982 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.603804 B = 4679.682993 C = 4932.649082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.211 3.789 3 H 0.018 0.982 4 C -0.508 4.508 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.532 5.532 13 C 0.039 3.961 14 C 0.085 3.915 15 H 0.019 0.981 16 C -0.137 4.137 17 C -0.072 4.072 18 C -0.099 4.099 19 C 0.062 3.938 20 N -0.696 5.696 21 C 0.063 3.937 22 C -0.113 4.113 23 H 0.029 0.971 24 H 0.059 0.941 25 H 0.019 0.981 26 H 0.259 0.741 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.011 0.989 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.079 0.921 38 H 0.351 0.649 39 H 0.029 0.971 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -3.682 -16.139 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.104 3.896 3 H 0.036 0.964 4 C -0.546 4.546 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.256 5.256 13 C -0.109 4.109 14 C -0.023 4.023 15 H 0.036 0.964 16 C -0.194 4.194 17 C -0.090 4.090 18 C -0.137 4.137 19 C -0.067 4.067 20 N -0.328 5.328 21 C -0.066 4.066 22 C -0.151 4.151 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.616 -3.041 -15.625 16.324 hybrid contribution -1.181 -0.954 0.966 1.799 sum 2.435 -3.995 -14.659 15.388 Atomic orbital electron populations 1.22189 1.01018 0.98875 0.99550 1.19123 0.89468 0.93721 0.87299 0.96421 1.21422 1.30049 1.12161 0.91005 0.92766 1.25672 0.95573 0.95868 1.01766 1.70024 1.38205 1.24360 1.23741 0.85521 0.77995 0.78652 0.79521 1.19282 1.20821 1.20845 1.62284 1.58528 1.02683 1.02070 1.22200 0.95962 0.91540 1.01193 1.21592 0.96148 0.94017 0.90579 0.96359 1.21879 1.00903 0.95916 1.00721 1.21155 0.96623 0.98110 0.93159 1.21475 0.94582 1.00957 0.96709 1.21906 1.00627 0.93612 0.90559 1.60247 1.12200 1.53648 1.06747 1.21886 0.87641 0.98865 0.98200 1.21694 1.00381 0.99541 0.93472 0.95171 0.92261 0.96166 0.93150 0.91042 0.92997 0.97069 0.94957 0.92332 0.90815 0.92093 0.92231 0.92220 0.95366 0.90271 0.83015 0.95254 0.89405 0.91472 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.22 71.98 0.59 -7.24 16 2 C 0.21 10.77 2.12 44.17 0.09 10.87 16 3 H 0.02 1.01 5.83 -2.39 -0.01 1.00 16 4 C -0.51 -28.24 7.91 25.60 0.20 -28.03 16 5 H 0.05 3.03 7.12 -2.91 -0.02 3.01 16 6 C 0.01 0.51 5.30 84.65 0.45 0.96 16 7 N -0.92 -53.82 11.32 21.45 0.24 -53.57 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 N -0.53 -22.53 3.87 -876.19 -3.39 -25.92 16 13 C 0.04 1.53 8.24 127.69 1.05 2.58 16 14 C 0.09 3.04 1.69 44.92 0.08 3.12 16 15 H 0.02 0.70 6.62 -2.39 -0.02 0.69 16 16 C -0.14 -4.83 8.28 71.98 0.60 -4.23 16 17 C -0.07 -2.04 1.59 -10.71 -0.02 -2.05 16 18 C -0.10 -2.80 4.89 30.65 0.15 -2.65 16 19 C 0.06 1.38 6.55 86.32 0.57 1.94 16 20 N -0.70 -13.81 6.85 -514.01 -3.52 -17.33 16 21 C 0.06 1.22 6.55 86.33 0.57 1.78 16 22 C -0.11 -2.65 5.09 30.65 0.16 -2.49 16 23 H 0.03 1.45 6.41 -2.39 -0.02 1.43 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 25 H 0.02 0.90 6.69 -2.39 -0.02 0.89 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.07 2.35 6.23 -2.39 -0.01 2.33 16 28 H 0.05 2.19 6.76 -2.39 -0.02 2.18 16 29 H 0.01 0.43 6.46 -2.39 -0.02 0.41 16 30 H 0.03 1.30 6.20 -2.39 -0.01 1.29 16 31 H 0.06 2.09 6.37 -2.39 -0.02 2.07 16 32 H 0.07 2.17 6.38 -2.39 -0.02 2.15 16 33 H 0.06 1.75 6.34 -2.39 -0.02 1.74 16 34 H 0.06 1.82 6.30 -2.39 -0.02 1.80 16 35 H 0.06 1.92 7.70 -2.38 -0.02 1.90 16 36 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.35 5.30 8.90 -89.69 -0.80 4.50 16 39 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.72 6.31 -2.39 -0.02 1.71 16 Total: -1.00 -60.12 301.05 0.04 -60.08 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.20 Total: 15.77 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 4.48 Total: -25.45 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -6.67 Total: -96.83 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -60.12 0.04 -60.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.725 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds