Wall clock time and date at job start Mon Mar 30 2020 03:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46619 * 2 1 4 4 C 1.52999 * 109.47432 * 239.99452 * 2 1 3 5 5 C 1.53116 * 109.52466 * 184.63735 * 4 2 1 6 6 C 1.53036 * 109.27836 * 182.44272 * 5 4 2 7 7 N 1.46842 * 109.52489 * 59.17695 * 6 5 4 8 8 C 1.46846 * 111.19855 * 298.25842 * 7 6 5 9 9 C 1.53040 * 109.52358 * 61.74269 * 8 7 6 10 10 N 1.46906 * 109.46963 * 119.99268 * 2 1 3 11 11 C 1.46901 * 110.99994 * 331.84406 * 10 2 1 12 12 C 1.46891 * 111.00161 * 207.88436 * 10 2 1 13 13 H 1.09001 * 109.47261 * 315.15682 * 12 10 2 14 14 C 1.53006 * 109.47010 * 75.15299 * 12 10 2 15 15 C 1.50702 * 109.47425 * 195.15264 * 12 10 2 16 16 H 1.07999 * 119.99507 * 359.97438 * 15 12 10 17 17 C 1.37874 * 119.99892 * 180.27844 * 15 12 10 18 18 N 1.31510 * 120.00343 * 359.72210 * 17 15 12 19 19 Si 1.86797 * 119.99588 * 179.72550 * 17 15 12 20 20 H 1.48505 * 109.47343 * 89.99821 * 19 17 15 21 21 H 1.48510 * 109.47145 * 209.99579 * 19 17 15 22 22 H 1.48496 * 109.47453 * 329.99643 * 19 17 15 23 23 H 1.09002 * 109.47062 * 184.27006 * 1 2 3 24 24 H 1.09000 * 109.47423 * 304.27396 * 1 2 3 25 25 H 1.09003 * 109.46851 * 64.27867 * 1 2 3 26 26 H 1.09004 * 109.51897 * 304.82908 * 4 2 1 27 27 H 1.09002 * 109.50187 * 302.38051 * 5 4 2 28 28 H 1.09001 * 109.50747 * 62.49688 * 5 4 2 29 29 H 1.09000 * 109.45675 * 299.15991 * 6 5 4 30 30 H 1.09001 * 109.45998 * 179.19728 * 6 5 4 31 31 H 1.00904 * 111.00201 * 174.15655 * 7 6 5 32 32 H 1.08997 * 109.45932 * 301.72804 * 8 7 6 33 33 H 1.08999 * 109.46239 * 181.75995 * 8 7 6 34 34 H 1.09000 * 109.50017 * 180.88332 * 9 8 7 35 35 H 1.08996 * 109.50554 * 60.76243 * 9 8 7 36 36 H 1.08998 * 109.47055 * 296.04186 * 11 10 2 37 37 H 1.08996 * 109.47245 * 56.03877 * 11 10 2 38 38 H 1.08996 * 109.46915 * 176.04272 * 11 10 2 39 39 H 1.09005 * 109.46906 * 187.69891 * 14 12 10 40 40 H 1.08999 * 109.46868 * 307.69489 * 14 12 10 41 41 H 1.08999 * 109.46952 * 67.69462 * 14 12 10 42 42 H 0.96999 * 120.00113 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5668 -0.8238 -1.1933 6 6 4.0755 -1.4914 -2.4730 7 7 3.6625 -0.6983 -3.6378 8 6 2.1993 -0.6257 -3.7390 9 6 1.6346 0.0678 -2.4971 10 7 2.0196 -0.6924 1.1996 11 6 1.0551 -0.5815 2.3020 12 6 3.3379 -0.1831 1.6002 13 1 3.9745 -0.0905 0.7202 14 6 3.1761 1.1884 2.2590 15 6 3.9697 -1.1391 2.5789 16 1 3.4442 -2.0352 2.8741 17 6 5.2158 -0.8666 3.1022 18 7 5.8555 0.2249 2.7430 19 14 5.9956 -2.0478 4.3212 20 1 6.7987 -3.0583 3.5868 21 1 6.8773 -1.2928 5.2474 22 1 4.9308 -2.7315 5.0984 23 1 -0.3633 -1.0248 0.0765 24 1 -0.3634 0.5787 0.8492 25 1 -0.3633 0.4460 -0.9259 26 1 1.6083 -1.7212 -1.2942 27 1 3.9957 0.1747 -1.1085 28 1 3.8602 -1.4210 -0.3299 29 1 3.6571 -2.4949 -2.5500 30 1 5.1633 -1.5530 -2.4427 31 1 4.0659 -1.0654 -4.4867 32 1 1.7898 -1.6333 -3.8101 33 1 1.9245 -0.0585 -4.6282 34 1 0.5474 0.1075 -2.5652 35 1 2.0330 1.0803 -2.4328 36 1 0.9525 0.4644 2.5912 37 1 0.0877 -0.9654 1.9784 38 1 1.4094 -1.1610 3.1544 39 1 4.1591 1.6265 2.4322 40 1 2.5982 1.8402 1.6039 41 1 2.6559 1.0754 3.2102 42 1 6.7324 0.4164 3.1109 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400581586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:56 Heat of formation + Delta-G solvation = -13.114645 kcal Electronic energy + Delta-G solvation = -18969.689386 eV Core-core repulsion = 16369.732529 eV Total energy + Delta-G solvation = -2599.956857 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56365 -38.33087 -35.32189 -33.55883 -31.97923 -31.19653 -28.98546 -27.31499 -27.21615 -24.51809 -23.66119 -22.48768 -20.55573 -20.12493 -18.09117 -17.58686 -17.12925 -16.28569 -15.66163 -15.46632 -15.24654 -14.86752 -14.75290 -14.37526 -13.93711 -13.71060 -13.45541 -13.16175 -13.13655 -12.89837 -12.76354 -12.49173 -12.40842 -12.14944 -12.09014 -12.05361 -11.94577 -11.47842 -11.39923 -11.16756 -10.92138 -10.66429 -10.30368 -9.31692 -8.70244 -8.05706 -6.14230 1.41652 1.42511 1.52317 2.44998 3.23483 3.38438 3.43270 3.91739 4.00069 4.15813 4.38233 4.40402 4.47238 4.50430 4.60142 4.67597 4.74875 4.78908 4.82461 4.87782 4.88798 4.97266 5.01203 5.07382 5.13719 5.17195 5.18281 5.23478 5.38620 5.42371 5.52922 5.62439 5.64993 5.79825 5.87986 6.15524 6.32617 6.60796 6.61860 6.88609 7.00440 7.54164 9.00328 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024180 B = 0.008089 C = 0.006722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.713990 B = 3460.569017 C = 4164.128155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.019 0.981 4 C -0.062 4.062 5 C -0.105 4.105 6 C 0.065 3.935 7 N -0.699 5.699 8 C 0.062 3.938 9 C -0.109 4.109 10 N -0.538 5.538 11 C 0.036 3.964 12 C 0.201 3.799 13 H 0.042 0.958 14 C -0.152 4.152 15 C -0.507 4.507 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.065 0.935 31 H 0.350 0.650 32 H 0.035 0.965 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.013 0.987 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.025 0.975 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.310 -1.626 -10.833 14.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 H 0.037 0.963 4 C -0.081 4.081 5 C -0.143 4.143 6 C -0.064 4.064 7 N -0.332 5.332 8 C -0.067 4.067 9 C -0.147 4.147 10 N -0.261 5.261 11 C -0.113 4.113 12 C 0.094 3.906 13 H 0.060 0.940 14 C -0.212 4.212 15 C -0.546 4.546 16 H 0.068 0.932 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.169 0.831 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.031 0.969 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.049 -1.444 -10.579 13.996 hybrid contribution 0.725 -0.326 1.024 1.297 sum -8.325 -1.770 -9.555 12.795 Atomic orbital electron populations 1.22045 0.93392 1.02369 1.02313 1.21712 0.95596 0.94569 0.91187 0.96282 1.21046 0.94543 0.98950 0.93593 1.21668 0.96360 0.99519 0.96737 1.21835 0.99631 0.94159 0.90774 1.60237 1.10195 1.56717 1.06042 1.21943 0.87038 0.99245 0.98517 1.21684 1.00886 0.98813 0.93298 1.62284 1.03250 1.56166 1.04427 1.22310 0.96084 0.98445 0.94412 1.19477 0.86250 0.89868 0.95010 0.94048 1.22190 1.00369 1.00290 0.98332 1.21370 1.01686 1.06642 1.24862 0.93164 1.25618 0.97728 0.96811 0.98508 1.70031 1.14263 1.26329 1.45482 0.85650 0.78306 0.79083 0.79118 1.20342 1.21191 1.19602 0.91599 0.92819 0.90483 0.91668 0.94732 0.92204 0.94929 0.91653 0.83077 0.94722 0.89085 0.89500 0.92922 0.96883 0.90223 0.93704 0.92802 0.96307 0.95544 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 7.69 71.98 0.55 -3.33 16 2 C 0.08 2.75 2.00 44.91 0.09 2.84 16 3 H 0.02 0.76 6.39 -2.39 -0.02 0.75 16 4 C -0.06 -2.01 2.01 -10.72 -0.02 -2.03 16 5 C -0.10 -3.99 3.73 30.65 0.11 -3.88 16 6 C 0.07 2.02 6.55 86.33 0.57 2.58 16 7 N -0.70 -18.10 6.84 -514.02 -3.52 -21.62 16 8 C 0.06 1.38 6.55 86.33 0.57 1.94 16 9 C -0.11 -2.79 5.07 30.65 0.16 -2.63 16 10 N -0.54 -22.77 4.25 -876.20 -3.72 -26.49 16 11 C 0.04 1.38 7.53 127.69 0.96 2.34 16 12 C 0.20 10.16 1.31 44.17 0.06 10.22 16 13 H 0.04 2.28 4.32 -2.39 -0.01 2.27 16 14 C -0.15 -7.68 7.75 71.98 0.56 -7.12 16 15 C -0.51 -28.21 8.03 25.60 0.21 -28.01 16 16 H 0.05 2.83 7.45 -2.91 -0.02 2.81 16 17 C 0.01 0.64 5.30 84.65 0.45 1.09 16 18 N -0.92 -53.78 11.40 21.45 0.24 -53.53 16 19 Si 0.95 44.65 29.54 68.60 2.03 46.68 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 H 0.07 1.70 7.54 -2.39 -0.02 1.68 16 24 H 0.05 1.44 6.80 -2.39 -0.02 1.42 16 25 H 0.08 1.69 6.43 -2.39 -0.02 1.68 16 26 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.03 1.49 7.41 -2.39 -0.02 1.47 16 28 H 0.06 2.74 6.09 -2.39 -0.01 2.72 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.35 7.20 8.90 -89.69 -0.80 6.40 16 32 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.09 1.80 6.60 -2.39 -0.02 1.79 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.01 0.50 6.20 -2.39 -0.01 0.48 16 37 H 0.08 2.53 5.97 -2.39 -0.01 2.52 16 38 H 0.04 1.89 7.22 -2.39 -0.02 1.87 16 39 H 0.05 3.00 6.31 -2.38 -0.02 2.98 16 40 H 0.02 0.84 6.66 -2.39 -0.02 0.83 16 41 H 0.03 1.30 6.81 -2.39 -0.02 1.28 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -61.21 301.13 -0.52 -61.73 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.20 Total: 19.22 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 4.25 Total: -25.98 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -7.00 Total: -101.64 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -61.21 -0.52 -61.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400581586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.615 kcal (2) G-P(sol) polarization free energy of solvation -61.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds