Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 N 1.46896 * 109.47303 * 120.00030 * 2 1 3 5 5 C 1.46903 * 111.00016 * 168.29389 * 4 2 1 6 6 C 1.50692 * 109.47156 * 293.95347 * 5 4 2 7 7 H 1.07997 * 120.00392 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00027 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47502 * 89.99612 * 10 8 6 12 12 H 1.48503 * 109.47111 * 209.99921 * 10 8 6 13 13 H 1.48497 * 109.46860 * 329.99761 * 10 8 6 14 14 C 1.46901 * 111.00099 * 292.24945 * 4 2 1 15 15 H 1.08999 * 109.47021 * 34.31169 * 14 4 2 16 16 C 1.53002 * 109.46871 * 274.31777 * 14 4 2 17 17 C 1.52992 * 109.47163 * 154.31582 * 14 4 2 18 18 H 1.08998 * 110.28853 * 63.00708 * 17 14 4 19 19 C 1.54265 * 110.32455 * 185.13347 * 17 14 4 20 20 C 1.54375 * 105.06007 * 118.89466 * 19 17 14 21 21 N 1.48563 * 104.59833 * 23.85516 * 20 19 17 22 22 C 1.48557 * 104.21749 * 320.51753 * 21 20 19 23 23 H 1.09003 * 109.46998 * 66.30653 * 1 2 3 24 24 H 1.08999 * 109.46991 * 306.30692 * 1 2 3 25 25 H 1.09003 * 109.46710 * 186.30666 * 1 2 3 26 26 H 1.09003 * 109.47347 * 240.00149 * 2 1 3 27 27 H 1.08993 * 109.46942 * 50.26013 * 3 2 1 28 28 H 1.08997 * 109.47092 * 170.26066 * 3 2 1 29 29 H 1.08998 * 109.46955 * 290.25605 * 3 2 1 30 30 H 1.09005 * 109.46846 * 53.95485 * 5 4 2 31 31 H 1.08999 * 109.47146 * 173.95327 * 5 4 2 32 32 H 0.97005 * 120.00003 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47082 * 306.11932 * 16 14 4 34 34 H 1.08999 * 109.47228 * 66.12475 * 16 14 4 35 35 H 1.09005 * 109.46592 * 186.12603 * 16 14 4 36 36 H 1.09001 * 110.32475 * 237.79041 * 19 17 14 37 37 H 1.09000 * 110.32058 * 359.89295 * 19 17 14 38 38 H 1.09003 * 110.41119 * 142.63531 * 20 19 17 39 39 H 1.09004 * 110.41002 * 264.95345 * 20 19 17 40 40 H 1.00894 * 110.99870 * 80.06975 * 21 20 19 41 41 H 1.09009 * 110.41161 * 280.70243 * 22 21 20 42 42 H 1.08997 * 110.41236 * 158.26670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4613 -0.9578 1.1024 6 6 3.7172 -1.9422 -0.0095 7 1 2.8916 -2.3321 -0.5862 8 6 5.0055 -2.3451 -0.2906 9 7 5.2289 -3.2038 -1.2613 10 14 6.4336 -1.6712 0.7073 11 1 6.6786 -2.5515 1.8779 12 1 7.6518 -1.6248 -0.1408 13 1 6.1058 -0.3015 1.1780 14 6 1.7056 0.0721 2.4138 15 1 0.7497 0.5800 2.2863 16 6 2.8041 1.1076 2.6628 17 6 1.6220 -0.8801 3.6084 18 1 2.5873 -1.3559 3.7809 19 6 1.1674 -0.1179 4.8703 20 6 -0.1597 -0.7875 5.2871 21 7 -0.0904 -2.1516 4.7026 22 6 0.5313 -1.9461 3.3692 23 1 -0.3633 0.4130 -0.9411 24 1 -0.3633 0.6085 0.8281 25 1 -0.3633 -1.0215 0.1129 26 1 1.8934 -0.5138 -0.8900 27 1 1.5417 2.0040 0.7902 28 1 3.1160 1.4475 0.1738 29 1 1.8256 1.9036 -0.9641 30 1 3.9887 -0.0272 0.8924 31 1 3.8185 -1.3731 2.0447 32 1 6.1353 -3.4875 -1.4589 33 1 3.7741 0.6108 2.6821 34 1 2.7916 1.8497 1.8646 35 1 2.6291 1.5999 3.6195 36 1 1.9088 -0.2211 5.6626 37 1 1.0057 0.9349 4.6389 38 1 -0.2330 -0.8426 6.3732 39 1 -1.0076 -0.2388 4.8770 40 1 0.4740 -2.7618 5.2746 41 1 -0.2084 -1.5800 2.6571 42 1 0.9782 -2.8736 3.0111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400660533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = 10.711904 kcal Electronic energy + Delta-G solvation = -18989.963136 eV Core-core repulsion = 16391.039476 eV Total energy + Delta-G solvation = -2598.923661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51166 -37.37907 -32.72065 -32.52000 -30.25713 -28.80127 -28.25604 -26.88299 -26.10326 -22.51462 -21.68511 -21.52331 -19.78360 -18.17874 -16.81394 -16.38066 -15.63534 -14.77539 -14.21118 -13.99088 -13.79963 -13.68995 -13.51092 -12.97614 -12.67446 -12.48018 -12.04384 -11.77251 -11.73929 -11.46309 -11.34245 -11.07066 -10.92732 -10.80476 -10.69329 -10.53949 -10.45729 -10.31634 -9.93689 -9.79251 -9.67365 -9.10495 -8.55885 -8.49637 -7.26593 -6.04548 -4.00577 3.26271 3.34279 3.35295 4.41363 4.46675 4.63611 4.93816 5.16721 5.25793 5.30121 5.33858 5.47997 5.62128 5.70401 5.76953 5.79652 5.84764 5.88742 5.95710 6.00881 6.03725 6.11323 6.15863 6.21366 6.30407 6.36938 6.42825 6.55741 6.58325 6.70526 6.73491 6.81031 6.93753 7.00669 7.11767 7.51110 7.65880 7.99148 8.15967 8.69507 9.05412 9.58167 11.08758 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.008461 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.068940 B = 3308.440496 C = 3695.634776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.080 3.920 3 C -0.183 4.183 4 N -0.513 5.513 5 C 0.161 3.839 6 C -0.506 4.506 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.870 3.130 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.090 3.910 15 H 0.071 0.929 16 C -0.204 4.204 17 C -0.108 4.108 18 H 0.071 0.929 19 C -0.153 4.153 20 C 0.041 3.959 21 N -0.677 5.677 22 C 0.062 3.938 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.047 0.953 30 H -0.005 1.005 31 H 0.020 0.980 32 H 0.262 0.738 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.332 0.668 41 H 0.081 0.919 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.066 8.227 9.770 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.242 4.242 4 N -0.235 5.235 5 C 0.035 3.965 6 C -0.544 4.544 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.020 4.020 15 H 0.089 0.911 16 C -0.263 4.263 17 C -0.129 4.129 18 H 0.089 0.911 19 C -0.193 4.193 20 C -0.089 4.089 21 N -0.303 5.303 22 C -0.067 4.067 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.013 0.987 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.099 0.901 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.898 7.568 9.482 15.045 hybrid contribution 2.509 1.362 0.685 2.936 sum -6.389 8.930 10.167 14.964 Atomic orbital electron populations 1.21870 0.95911 1.01847 1.00092 1.21621 0.93900 0.91736 0.95608 1.22753 1.01886 0.98922 1.00622 1.62268 1.18163 1.43336 0.99725 1.20189 0.83744 0.95393 0.97146 1.21086 0.93902 1.24048 1.15373 0.90165 1.24883 0.98487 0.94877 0.95027 1.69894 1.20970 1.32793 1.30386 0.86937 0.82721 0.79986 0.80544 1.20304 1.21298 1.19337 1.21633 0.97482 0.91905 0.90932 0.91070 1.23055 1.01117 1.00538 1.01550 1.22445 1.00115 0.96718 0.93583 0.91065 1.22986 0.97972 1.00640 0.97716 1.22964 0.96970 0.90279 0.98733 1.63358 1.52151 1.09682 1.05088 1.22880 0.94695 0.98649 0.90520 0.93243 0.93773 0.91974 0.88478 0.93061 0.91946 0.93397 0.98724 0.96195 0.92764 0.91924 0.91075 0.93538 0.92198 0.91243 0.91644 0.90740 0.85379 0.90088 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.08 37.16 0.34 -1.78 16 2 C 0.08 1.46 2.76 -67.71 -0.19 1.27 16 3 C -0.18 -3.00 7.31 37.16 0.27 -2.72 16 4 N -0.51 -9.96 3.93 -220.15 -0.87 -10.82 16 5 C 0.16 3.74 2.26 -4.98 -0.01 3.73 16 6 C -0.51 -13.99 8.90 -34.44 -0.31 -14.29 16 7 H 0.08 2.43 7.44 -52.49 -0.39 2.04 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 10 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 14 C 0.09 1.45 0.94 -67.72 -0.06 1.39 16 15 H 0.07 1.09 5.71 -51.93 -0.30 0.80 16 16 C -0.20 -3.24 7.65 37.16 0.28 -2.96 16 17 C -0.11 -1.64 2.63 -89.24 -0.23 -1.87 16 18 H 0.07 1.22 7.26 -51.93 -0.38 0.85 16 19 C -0.15 -1.89 6.05 -25.35 -0.15 -2.04 16 20 C 0.04 0.47 7.47 -2.18 -0.02 0.45 16 21 N -0.68 -9.04 7.62 -109.66 -0.84 -9.87 16 22 C 0.06 0.94 6.64 -2.18 -0.01 0.93 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.04 0.61 6.49 -51.93 -0.34 0.28 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 2.08 6.62 -51.93 -0.34 1.73 16 27 H 0.05 0.75 5.96 -51.93 -0.31 0.44 16 28 H 0.06 1.13 5.37 -51.93 -0.28 0.86 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.00 -0.11 4.27 -51.93 -0.22 -0.33 16 31 H 0.02 0.48 6.22 -51.93 -0.32 0.16 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.13 6.02 -51.93 -0.31 0.82 16 34 H 0.07 1.11 4.15 -51.93 -0.22 0.89 16 35 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.82 6.78 -51.93 -0.35 0.47 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.33 4.06 8.92 -39.29 -0.35 3.71 16 41 H 0.08 1.30 7.86 -51.92 -0.41 0.89 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -28.82 301.94 -8.23 -37.05 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.99 Total: 5.05 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -0.19 Total: -16.04 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.93 Total: -47.35 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.82 -8.23 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400660533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.758 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds