Wall clock time and date at job start Mon Mar 30 2020 03:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47027 * 2 1 4 4 N 1.46896 * 109.47303 * 120.00030 * 2 1 3 5 5 C 1.46903 * 111.00016 * 168.29389 * 4 2 1 6 6 C 1.50692 * 109.47156 * 293.95347 * 5 4 2 7 7 H 1.07997 * 120.00392 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99940 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00027 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00104 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47502 * 89.99612 * 10 8 6 12 12 H 1.48503 * 109.47111 * 209.99921 * 10 8 6 13 13 H 1.48497 * 109.46860 * 329.99761 * 10 8 6 14 14 C 1.46901 * 111.00099 * 292.24945 * 4 2 1 15 15 H 1.08999 * 109.47021 * 34.31169 * 14 4 2 16 16 C 1.53002 * 109.46871 * 274.31777 * 14 4 2 17 17 C 1.52992 * 109.47163 * 154.31582 * 14 4 2 18 18 H 1.08998 * 110.28853 * 63.00708 * 17 14 4 19 19 C 1.54265 * 110.32455 * 185.13347 * 17 14 4 20 20 C 1.54375 * 105.06007 * 118.89466 * 19 17 14 21 21 N 1.48563 * 104.59833 * 23.85516 * 20 19 17 22 22 C 1.48557 * 104.21749 * 320.51753 * 21 20 19 23 23 H 1.09003 * 109.46998 * 66.30653 * 1 2 3 24 24 H 1.08999 * 109.46991 * 306.30692 * 1 2 3 25 25 H 1.09003 * 109.46710 * 186.30666 * 1 2 3 26 26 H 1.09003 * 109.47347 * 240.00149 * 2 1 3 27 27 H 1.08993 * 109.46942 * 50.26013 * 3 2 1 28 28 H 1.08997 * 109.47092 * 170.26066 * 3 2 1 29 29 H 1.08998 * 109.46955 * 290.25605 * 3 2 1 30 30 H 1.09005 * 109.46846 * 53.95485 * 5 4 2 31 31 H 1.08999 * 109.47146 * 173.95327 * 5 4 2 32 32 H 0.97005 * 120.00003 * 180.02562 * 9 8 6 33 33 H 1.08994 * 109.47082 * 306.11932 * 16 14 4 34 34 H 1.08999 * 109.47228 * 66.12475 * 16 14 4 35 35 H 1.09005 * 109.46592 * 186.12603 * 16 14 4 36 36 H 1.09001 * 110.32475 * 237.79041 * 19 17 14 37 37 H 1.09000 * 110.32058 * 359.89295 * 19 17 14 38 38 H 1.09003 * 110.41119 * 142.63531 * 20 19 17 39 39 H 1.09004 * 110.41002 * 264.95345 * 20 19 17 40 40 H 1.00894 * 110.99870 * 80.06975 * 21 20 19 41 41 H 1.09009 * 110.41161 * 280.70243 * 22 21 20 42 42 H 1.08997 * 110.41236 * 158.26670 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4613 -0.9578 1.1024 6 6 3.7172 -1.9422 -0.0095 7 1 2.8916 -2.3321 -0.5862 8 6 5.0055 -2.3451 -0.2906 9 7 5.2289 -3.2038 -1.2613 10 14 6.4336 -1.6712 0.7073 11 1 6.6786 -2.5515 1.8779 12 1 7.6518 -1.6248 -0.1408 13 1 6.1058 -0.3015 1.1780 14 6 1.7056 0.0721 2.4138 15 1 0.7497 0.5800 2.2863 16 6 2.8041 1.1076 2.6628 17 6 1.6220 -0.8801 3.6084 18 1 2.5873 -1.3559 3.7809 19 6 1.1674 -0.1179 4.8703 20 6 -0.1597 -0.7875 5.2871 21 7 -0.0904 -2.1516 4.7026 22 6 0.5313 -1.9461 3.3692 23 1 -0.3633 0.4130 -0.9411 24 1 -0.3633 0.6085 0.8281 25 1 -0.3633 -1.0215 0.1129 26 1 1.8934 -0.5138 -0.8900 27 1 1.5417 2.0040 0.7902 28 1 3.1160 1.4475 0.1738 29 1 1.8256 1.9036 -0.9641 30 1 3.9887 -0.0272 0.8924 31 1 3.8185 -1.3731 2.0447 32 1 6.1353 -3.4875 -1.4589 33 1 3.7741 0.6108 2.6821 34 1 2.7916 1.8497 1.8646 35 1 2.6291 1.5999 3.6195 36 1 1.9088 -0.2211 5.6626 37 1 1.0057 0.9349 4.6389 38 1 -0.2330 -0.8426 6.3732 39 1 -1.0076 -0.2388 4.8770 40 1 0.4740 -2.7618 5.2746 41 1 -0.2084 -1.5800 2.6571 42 1 0.9782 -2.8736 3.0111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400660533.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:37 Heat of formation + Delta-G solvation = -10.173330 kcal Electronic energy + Delta-G solvation = -18990.868788 eV Core-core repulsion = 16391.039476 eV Total energy + Delta-G solvation = -2599.829312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.84406 -38.63218 -34.85039 -33.80968 -31.92251 -29.95376 -29.49227 -28.49080 -27.50040 -24.22801 -23.05789 -22.71321 -21.03307 -19.69265 -18.83173 -17.53782 -17.07617 -16.32260 -15.95927 -15.39717 -15.12257 -15.01631 -14.69325 -14.58792 -14.33842 -13.85023 -13.35464 -13.33876 -13.03850 -12.84775 -12.66697 -12.52312 -12.33305 -12.29998 -12.01840 -11.97809 -11.79828 -11.75317 -11.53883 -11.52656 -11.08541 -10.90698 -10.73636 -9.57140 -8.81588 -8.27519 -6.28201 1.30194 1.31021 1.41277 2.32180 3.06050 3.21241 3.44680 3.81222 3.99554 4.10164 4.18360 4.28169 4.38443 4.47349 4.49862 4.54735 4.65599 4.71393 4.76141 4.81054 4.82305 4.87381 4.96308 4.99664 5.04347 5.06080 5.14211 5.20016 5.24488 5.32078 5.35636 5.44703 5.48710 5.56778 5.63416 5.85390 6.09127 6.49018 6.55260 6.77595 6.82067 7.34973 8.89417 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.008461 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.068940 B = 3308.440496 C = 3695.634776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.075 3.925 3 C -0.174 4.174 4 N -0.526 5.526 5 C 0.180 3.820 6 C -0.507 4.507 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.939 3.061 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.252 1.252 14 C 0.092 3.908 15 H 0.090 0.910 16 C -0.200 4.200 17 C -0.108 4.108 18 H 0.046 0.954 19 C -0.143 4.143 20 C 0.043 3.957 21 N -0.682 5.682 22 C 0.068 3.932 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.060 0.940 30 H -0.005 1.005 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.338 0.662 41 H 0.074 0.926 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 10.687 12.171 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.033 4.033 3 C -0.233 4.233 4 N -0.248 5.248 5 C 0.053 3.947 6 C -0.546 4.546 7 H 0.055 0.945 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.763 3.237 11 H -0.194 1.194 12 H -0.209 1.209 13 H -0.175 1.175 14 C -0.017 4.017 15 H 0.108 0.892 16 C -0.258 4.258 17 C -0.129 4.129 18 H 0.065 0.935 19 C -0.183 4.183 20 C -0.087 4.087 21 N -0.308 5.308 22 C -0.062 4.062 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.012 0.988 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.153 0.847 41 H 0.092 0.908 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.654 10.043 11.900 18.321 hybrid contribution 2.625 0.541 -0.108 2.682 sum -7.029 10.583 11.792 17.334 Atomic orbital electron populations 1.21769 0.93230 1.01678 1.01960 1.21607 0.95980 0.92379 0.93372 1.22648 1.00587 0.97663 1.02380 1.62157 1.15568 1.45416 1.01694 1.19830 0.86414 0.93784 0.94701 1.21354 0.92777 1.24475 1.15988 0.94500 1.25769 1.01627 0.95241 0.96212 1.70054 1.21758 1.34754 1.32540 0.85840 0.78798 0.80109 0.78966 1.19438 1.20879 1.17534 1.21733 0.98416 0.92023 0.89485 0.89246 1.22993 0.99345 1.00218 1.03281 1.22423 0.98864 0.96797 0.94837 0.93513 1.22920 0.98396 1.00875 0.96098 1.23044 0.96678 0.88884 1.00058 1.63335 1.51913 1.11158 1.04375 1.22684 0.94507 0.97404 0.91601 0.91495 0.91591 0.93296 0.93002 0.90513 0.94018 0.92058 0.98771 0.96684 0.92658 0.94419 0.90710 0.90750 0.91314 0.89852 0.89382 0.90216 0.84731 0.90792 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.08 71.98 0.65 -3.07 16 2 C 0.08 2.74 2.76 44.92 0.12 2.86 16 3 C -0.17 -5.40 7.31 71.98 0.53 -4.87 16 4 N -0.53 -20.51 3.93 -850.42 -3.34 -23.85 16 5 C 0.18 8.46 2.26 85.55 0.19 8.65 16 6 C -0.51 -29.36 8.90 25.60 0.23 -29.13 16 7 H 0.04 2.39 7.44 -2.91 -0.02 2.37 16 8 C 0.01 0.49 5.47 84.65 0.46 0.95 16 9 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 10 Si 0.94 44.76 27.47 68.60 1.88 46.64 16 11 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 13 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 14 C 0.09 2.80 0.94 44.91 0.04 2.84 16 15 H 0.09 2.42 5.71 -2.39 -0.01 2.41 16 16 C -0.20 -5.79 7.65 71.98 0.55 -5.24 16 17 C -0.11 -3.12 2.63 -9.90 -0.03 -3.15 16 18 H 0.05 1.58 7.26 -2.39 -0.02 1.56 16 19 C -0.14 -3.02 6.05 31.49 0.19 -2.83 16 20 C 0.04 0.84 7.47 86.45 0.65 1.49 16 21 N -0.68 -16.95 7.62 -500.85 -3.82 -20.77 16 22 C 0.07 2.04 6.64 86.45 0.57 2.61 16 23 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.62 6.49 -2.39 -0.02 1.60 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.34 6.62 -2.39 -0.02 2.32 16 27 H 0.08 1.98 5.96 -2.39 -0.01 1.96 16 28 H 0.04 1.46 5.37 -2.39 -0.01 1.45 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 30 H -0.01 -0.25 4.27 -2.38 -0.01 -0.26 16 31 H 0.02 0.73 6.22 -2.39 -0.01 0.71 16 32 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 33 H 0.04 1.28 6.02 -2.39 -0.01 1.26 16 34 H 0.07 2.10 4.15 -2.39 -0.01 2.09 16 35 H 0.07 1.73 6.70 -2.38 -0.02 1.71 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.56 6.78 -2.39 -0.02 1.54 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.34 7.74 8.92 -89.70 -0.80 6.94 16 41 H 0.07 2.31 7.86 -2.38 -0.02 2.30 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -65.12 301.94 -0.67 -65.79 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 0.15 Total: 20.88 kcal Atomic # 6 Polarization: -33.06 SS G_CDS: 4.16 Total: -28.89 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -6.86 Total: -104.41 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -65.12 -0.67 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400660533.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.614 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds