Wall clock time and date at job start Mon Mar 30 2020 03:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 N 1.46904 * 109.47470 * 119.99911 * 2 1 3 5 5 C 1.46898 * 111.00261 * 180.73001 * 4 2 1 6 6 C 1.50708 * 109.46715 * 296.53180 * 5 4 2 7 7 H 1.07994 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99348 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00667 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99627 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47346 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47575 * 119.99522 * 10 8 6 13 13 H 1.48503 * 109.47174 * 239.99940 * 10 8 6 14 14 C 1.46901 * 110.99529 * 304.68143 * 4 2 1 15 15 H 1.08994 * 109.47636 * 326.02306 * 14 4 2 16 16 C 1.53001 * 109.47235 * 86.02542 * 14 4 2 17 17 C 1.52996 * 109.46787 * 206.02045 * 14 4 2 18 18 H 1.09005 * 110.62988 * 61.20552 * 17 14 4 19 19 C 1.55148 * 110.70463 * 184.49243 * 17 14 4 20 20 C 1.54917 * 101.65196 * 154.03881 * 19 17 14 21 21 N 1.47845 * 104.79378 * 322.93386 * 20 19 17 22 22 C 1.47444 * 108.57154 * 24.09514 * 21 20 19 23 23 H 1.09001 * 109.47483 * 69.33411 * 1 2 3 24 24 H 1.09005 * 109.47621 * 309.33649 * 1 2 3 25 25 H 1.09003 * 109.47153 * 189.33630 * 1 2 3 26 26 H 1.08998 * 109.47225 * 240.00039 * 2 1 3 27 27 H 1.08994 * 109.47403 * 65.88875 * 3 2 1 28 28 H 1.08996 * 109.47318 * 185.89369 * 3 2 1 29 29 H 1.09007 * 109.46428 * 305.88873 * 3 2 1 30 30 H 1.09004 * 109.47157 * 56.52779 * 5 4 2 31 31 H 1.08996 * 109.47026 * 176.53533 * 5 4 2 32 32 H 0.97004 * 120.00596 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47133 * 66.95957 * 16 14 4 34 34 H 1.08994 * 109.47476 * 186.96477 * 16 14 4 35 35 H 1.09003 * 109.46604 * 306.96739 * 16 14 4 36 36 H 1.09000 * 110.99132 * 272.12865 * 19 17 14 37 37 H 1.08996 * 110.99125 * 35.95299 * 19 17 14 38 38 H 1.08996 * 110.37394 * 204.10787 * 20 19 17 39 39 H 1.09001 * 110.46346 * 81.80457 * 20 19 17 40 40 H 1.00900 * 111.00026 * 261.82804 * 21 20 19 41 41 H 1.08997 * 109.88759 * 239.60879 * 22 21 20 42 42 H 1.08997 * 109.89106 * 118.41489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4880 -0.6970 1.2421 6 6 4.0222 -1.4769 0.0685 7 1 3.3393 -1.9248 -0.6381 8 6 5.3829 -1.6195 -0.1025 9 7 6.2146 -1.0745 0.7582 10 14 6.0452 -2.5868 -1.5569 11 1 4.9118 -3.0951 -2.3707 12 1 6.8978 -1.7034 -2.3921 13 1 6.8523 -3.7316 -1.0637 14 6 1.4594 -0.0939 2.4184 15 1 1.3370 0.9793 2.2731 16 6 0.0989 -0.7264 2.7183 17 6 2.4082 -0.3448 3.5922 18 1 3.3782 0.1168 3.4073 19 6 1.7918 0.1770 4.9169 20 6 2.4941 -0.7226 5.9645 21 7 2.5982 -2.0470 5.3156 22 6 2.5647 -1.8576 3.8537 23 1 -0.3634 0.3627 -0.9615 24 1 -0.3634 0.6514 0.7948 25 1 -0.3633 -1.0141 0.1667 26 1 1.8932 -0.5138 -0.8900 27 1 1.7653 1.9250 0.9379 28 1 3.1248 1.4443 -0.1055 29 1 1.5930 1.9858 -0.8327 30 1 3.8560 0.3280 1.1950 31 1 3.8231 -1.1611 2.1696 32 1 7.1719 -1.1745 0.6377 33 1 0.2362 -1.7743 2.9849 34 1 -0.3721 -0.1991 3.5478 35 1 -0.5367 -0.6565 1.8355 36 1 2.0387 1.2268 5.0755 37 1 0.7127 0.0246 4.9321 38 1 1.8924 -0.7904 6.8708 39 1 3.4859 -0.3346 6.1963 40 1 1.8540 -2.6574 5.6182 41 1 1.7178 -2.3967 3.4293 42 1 3.4944 -2.2160 3.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400660539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:41 Heat of formation + Delta-G solvation = 20.290344 kcal Electronic energy + Delta-G solvation = -19057.013305 eV Core-core repulsion = 16458.504997 eV Total energy + Delta-G solvation = -2598.508308 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.51997 -37.00102 -32.86009 -32.32897 -30.34746 -29.01363 -27.62085 -26.40549 -25.94531 -22.63115 -22.23556 -21.13085 -19.64406 -17.76323 -16.58847 -16.21735 -15.21892 -14.82288 -14.70370 -14.10850 -13.72780 -13.47226 -13.09963 -12.86320 -12.48819 -12.13724 -11.93845 -11.87427 -11.50823 -11.33522 -11.05487 -10.93644 -10.91470 -10.64773 -10.58537 -10.51910 -10.28969 -10.07144 -9.90550 -9.70065 -9.50385 -8.99308 -8.35753 -8.03938 -7.06411 -5.97219 -3.97050 3.33355 3.41304 3.45403 4.46290 4.60815 4.78877 5.11139 5.19354 5.36615 5.41022 5.58127 5.63440 5.65618 5.74158 5.79491 5.91431 5.94922 5.97135 6.05443 6.09617 6.17550 6.26409 6.27591 6.33141 6.39173 6.49075 6.55152 6.66212 6.80702 6.89140 6.91994 7.02629 7.23629 7.48843 7.50837 7.74629 7.87177 8.19525 8.32060 8.66237 9.10816 9.66457 11.13317 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.009143 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.084304 B = 3061.826606 C = 3980.693814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 C -0.181 4.181 4 N -0.523 5.523 5 C 0.176 3.824 6 C -0.503 4.503 7 H 0.060 0.940 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.892 3.108 11 H -0.273 1.273 12 H -0.287 1.287 13 H -0.285 1.285 14 C 0.085 3.915 15 H 0.039 0.961 16 C -0.162 4.162 17 C -0.103 4.103 18 H 0.086 0.914 19 C -0.155 4.155 20 C 0.049 3.951 21 N -0.689 5.689 22 C 0.055 3.945 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.045 0.955 28 H 0.068 0.932 29 H 0.044 0.956 30 H -0.008 1.008 31 H 0.051 0.949 32 H 0.259 0.741 33 H 0.057 0.943 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.072 0.928 40 H 0.329 0.671 41 H 0.063 0.937 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.888 2.883 5.498 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 C -0.240 4.240 4 N -0.247 5.247 5 C 0.052 3.948 6 C -0.542 4.542 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.211 1.211 14 C -0.024 4.024 15 H 0.057 0.943 16 C -0.219 4.219 17 C -0.123 4.123 18 H 0.104 0.896 19 C -0.194 4.194 20 C -0.080 4.080 21 N -0.316 5.316 22 C -0.073 4.073 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.143 0.857 41 H 0.081 0.919 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.129 2.333 5.559 11.787 hybrid contribution -0.067 0.686 -0.901 1.135 sum -10.196 3.019 4.657 11.609 Atomic orbital electron populations 1.22195 0.96722 1.01427 1.00137 1.21531 0.92991 0.92091 0.95797 1.22414 1.02976 0.98500 1.00122 1.62490 1.11950 1.51198 0.99091 1.20110 0.80213 0.95745 0.98759 1.21219 0.91087 1.32360 1.09558 0.92133 1.24944 0.97058 0.96045 0.96467 1.69956 1.02575 1.45132 1.36024 0.86541 0.78912 0.79832 0.82720 1.19786 1.21290 1.21102 1.21506 0.93855 0.96322 0.90700 0.94298 1.22456 0.97213 1.00969 1.01257 1.22552 0.99548 0.96844 0.93364 0.89558 1.23306 1.00182 0.99875 0.96050 1.22814 0.99989 0.89278 0.95946 1.61821 1.50804 1.11980 1.07008 1.22899 1.03024 0.95191 0.86208 0.93649 0.93071 0.91898 0.89399 0.93643 0.91295 0.93673 0.98988 0.93143 0.93120 0.92388 0.93937 0.90854 0.91540 0.91215 0.92355 0.90920 0.85682 0.91915 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.47 37.15 0.28 -1.95 16 2 C 0.08 1.60 2.77 -67.71 -0.19 1.41 16 3 C -0.18 -3.30 8.47 37.16 0.31 -2.99 16 4 N -0.52 -10.66 4.26 -220.15 -0.94 -11.59 16 5 C 0.18 4.36 3.18 -4.97 -0.02 4.35 16 6 C -0.50 -13.80 8.51 -34.44 -0.29 -14.09 16 7 H 0.06 1.66 6.92 -52.49 -0.36 1.30 16 8 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 10 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.09 1.48 1.64 -67.71 -0.11 1.37 16 15 H 0.04 0.69 5.50 -51.93 -0.29 0.40 16 16 C -0.16 -2.38 8.22 37.16 0.31 -2.07 16 17 C -0.10 -1.81 2.09 -88.80 -0.19 -1.99 16 18 H 0.09 1.78 6.64 -51.93 -0.34 1.44 16 19 C -0.15 -2.17 6.40 -24.58 -0.16 -2.33 16 20 C 0.05 0.68 7.57 -2.29 -0.02 0.66 16 21 N -0.69 -10.77 7.39 -110.79 -0.82 -11.59 16 22 C 0.05 0.99 6.09 -2.84 -0.02 0.97 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.05 0.72 6.16 -51.93 -0.32 0.40 16 25 H 0.06 0.95 7.08 -51.93 -0.37 0.58 16 26 H 0.09 1.85 6.71 -51.93 -0.35 1.50 16 27 H 0.04 0.79 5.99 -51.93 -0.31 0.48 16 28 H 0.07 1.46 6.65 -51.93 -0.35 1.11 16 29 H 0.04 0.72 8.14 -51.92 -0.42 0.29 16 30 H -0.01 -0.20 6.23 -51.93 -0.32 -0.53 16 31 H 0.05 1.32 3.77 -51.93 -0.20 1.13 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.06 0.88 5.84 -51.93 -0.30 0.58 16 34 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 35 H 0.07 1.04 3.87 -51.93 -0.20 0.84 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.90 5.82 -51.93 -0.30 0.60 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.33 4.41 8.91 -39.29 -0.35 4.06 16 41 H 0.06 1.11 5.61 -51.93 -0.29 0.82 16 42 H 0.09 1.96 6.43 -51.93 -0.33 1.62 16 LS Contribution 297.22 15.07 4.48 4.48 Total: -1.00 -28.47 297.22 -8.32 -36.78 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -6.57 Total: 6.12 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -0.18 Total: -15.20 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -1.02 Total: -48.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.47 -8.32 -36.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400660539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.073 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds