Wall clock time and date at job start Mon Mar 30 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47308 * 2 1 4 4 N 1.46904 * 109.47470 * 119.99911 * 2 1 3 5 5 C 1.46898 * 111.00261 * 180.73001 * 4 2 1 6 6 C 1.50708 * 109.46715 * 296.53180 * 5 4 2 7 7 H 1.07994 * 120.00020 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99348 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00667 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99627 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47346 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47575 * 119.99522 * 10 8 6 13 13 H 1.48503 * 109.47174 * 239.99940 * 10 8 6 14 14 C 1.46901 * 110.99529 * 304.68143 * 4 2 1 15 15 H 1.08994 * 109.47636 * 326.02306 * 14 4 2 16 16 C 1.53001 * 109.47235 * 86.02542 * 14 4 2 17 17 C 1.52996 * 109.46787 * 206.02045 * 14 4 2 18 18 H 1.09005 * 110.62988 * 61.20552 * 17 14 4 19 19 C 1.55148 * 110.70463 * 184.49243 * 17 14 4 20 20 C 1.54917 * 101.65196 * 154.03881 * 19 17 14 21 21 N 1.47845 * 104.79378 * 322.93386 * 20 19 17 22 22 C 1.47444 * 108.57154 * 24.09514 * 21 20 19 23 23 H 1.09001 * 109.47483 * 69.33411 * 1 2 3 24 24 H 1.09005 * 109.47621 * 309.33649 * 1 2 3 25 25 H 1.09003 * 109.47153 * 189.33630 * 1 2 3 26 26 H 1.08998 * 109.47225 * 240.00039 * 2 1 3 27 27 H 1.08994 * 109.47403 * 65.88875 * 3 2 1 28 28 H 1.08996 * 109.47318 * 185.89369 * 3 2 1 29 29 H 1.09007 * 109.46428 * 305.88873 * 3 2 1 30 30 H 1.09004 * 109.47157 * 56.52779 * 5 4 2 31 31 H 1.08996 * 109.47026 * 176.53533 * 5 4 2 32 32 H 0.97004 * 120.00596 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.47133 * 66.95957 * 16 14 4 34 34 H 1.08994 * 109.47476 * 186.96477 * 16 14 4 35 35 H 1.09003 * 109.46604 * 306.96739 * 16 14 4 36 36 H 1.09000 * 110.99132 * 272.12865 * 19 17 14 37 37 H 1.08996 * 110.99125 * 35.95299 * 19 17 14 38 38 H 1.08996 * 110.37394 * 204.10787 * 20 19 17 39 39 H 1.09001 * 110.46346 * 81.80457 * 20 19 17 40 40 H 1.00900 * 111.00026 * 261.82804 * 21 20 19 41 41 H 1.08997 * 109.88759 * 239.60879 * 22 21 20 42 42 H 1.08997 * 109.89106 * 118.41489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.4880 -0.6970 1.2421 6 6 4.0222 -1.4769 0.0685 7 1 3.3393 -1.9248 -0.6381 8 6 5.3829 -1.6195 -0.1025 9 7 6.2146 -1.0745 0.7582 10 14 6.0452 -2.5868 -1.5569 11 1 4.9118 -3.0951 -2.3707 12 1 6.8978 -1.7034 -2.3921 13 1 6.8523 -3.7316 -1.0637 14 6 1.4594 -0.0939 2.4184 15 1 1.3370 0.9793 2.2731 16 6 0.0989 -0.7264 2.7183 17 6 2.4082 -0.3448 3.5922 18 1 3.3782 0.1168 3.4073 19 6 1.7918 0.1770 4.9169 20 6 2.4941 -0.7226 5.9645 21 7 2.5982 -2.0470 5.3156 22 6 2.5647 -1.8576 3.8537 23 1 -0.3634 0.3627 -0.9615 24 1 -0.3634 0.6514 0.7948 25 1 -0.3633 -1.0141 0.1667 26 1 1.8932 -0.5138 -0.8900 27 1 1.7653 1.9250 0.9379 28 1 3.1248 1.4443 -0.1055 29 1 1.5930 1.9858 -0.8327 30 1 3.8560 0.3280 1.1950 31 1 3.8231 -1.1611 2.1696 32 1 7.1719 -1.1745 0.6377 33 1 0.2362 -1.7743 2.9849 34 1 -0.3721 -0.1991 3.5478 35 1 -0.5367 -0.6565 1.8355 36 1 2.0387 1.2268 5.0755 37 1 0.7127 0.0246 4.9321 38 1 1.8924 -0.7904 6.8708 39 1 3.4859 -0.3346 6.1963 40 1 1.8540 -2.6574 5.6182 41 1 1.7178 -2.3967 3.4293 42 1 3.4944 -2.2160 3.4119 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400660539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:40 Heat of formation + Delta-G solvation = -0.284452 kcal Electronic energy + Delta-G solvation = -19057.905495 eV Core-core repulsion = 16458.504997 eV Total energy + Delta-G solvation = -2599.400498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.96697 -38.42037 -34.94246 -33.69798 -32.03195 -30.28140 -29.01630 -28.11153 -27.54144 -24.20110 -23.93171 -22.43986 -21.09332 -19.27157 -18.27711 -17.96653 -16.69835 -16.55435 -16.21480 -15.73558 -15.18782 -14.91255 -14.72577 -14.26674 -13.88107 -13.77795 -13.43663 -13.16969 -13.01755 -12.91838 -12.68481 -12.46751 -12.37994 -12.25991 -12.14806 -11.97505 -11.81584 -11.74381 -11.37890 -11.19498 -11.07420 -10.90120 -10.50086 -9.33467 -8.76037 -8.15002 -6.22252 1.37739 1.39149 1.51423 2.41334 3.17283 3.29733 3.37842 3.81722 3.90889 4.04522 4.17351 4.34942 4.39926 4.44506 4.46462 4.57245 4.58864 4.70659 4.79022 4.84199 4.86694 4.96905 4.99538 5.03379 5.10317 5.16764 5.18397 5.25272 5.26455 5.40192 5.46790 5.57889 5.60898 5.68285 5.74928 5.95430 6.17812 6.52847 6.62325 6.84589 6.97168 7.46172 8.95376 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.009143 C = 0.007032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.084304 B = 3061.826606 C = 3980.693814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.078 3.922 3 C -0.172 4.172 4 N -0.528 5.528 5 C 0.197 3.803 6 C -0.514 4.514 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.933 5.933 10 Si 0.958 3.042 11 H -0.264 1.264 12 H -0.281 1.281 13 H -0.281 1.281 14 C 0.086 3.914 15 H 0.041 0.959 16 C -0.153 4.153 17 C -0.105 4.105 18 H 0.040 0.960 19 C -0.141 4.141 20 C 0.049 3.951 21 N -0.699 5.699 22 C 0.068 3.932 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.026 0.974 29 H 0.071 0.929 30 H -0.041 1.041 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.058 0.942 40 H 0.346 0.654 41 H 0.068 0.932 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.625 2.966 5.907 15.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.031 4.031 3 C -0.230 4.230 4 N -0.252 5.252 5 C 0.071 3.929 6 C -0.553 4.553 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.188 1.188 12 H -0.207 1.207 13 H -0.207 1.207 14 C -0.023 4.023 15 H 0.059 0.941 16 C -0.210 4.210 17 C -0.125 4.125 18 H 0.058 0.942 19 C -0.180 4.180 20 C -0.080 4.080 21 N -0.328 5.328 22 C -0.061 4.061 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.090 0.910 30 H -0.024 1.024 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.162 0.838 41 H 0.086 0.914 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.897 2.414 5.974 14.417 hybrid contribution 0.790 0.679 -0.995 1.441 sum -12.107 3.093 4.978 13.451 Atomic orbital electron populations 1.22080 0.92921 1.02179 1.02046 1.21606 0.95916 0.91649 0.93913 1.22300 1.00275 0.98770 1.01684 1.62431 1.08994 1.52559 1.01258 1.19684 0.83268 0.93032 0.96930 1.21553 0.91391 1.32175 1.10139 0.92561 1.25794 0.97468 0.97121 0.99205 1.70092 1.02785 1.46642 1.37937 0.85500 0.78340 0.78369 0.79420 1.18841 1.20717 1.20725 1.21630 0.95157 0.96522 0.88997 0.94127 1.22390 0.95148 1.00652 1.02830 1.22447 0.97936 0.96352 0.95806 0.94156 1.23259 1.01187 1.00291 0.93257 1.22870 1.00039 0.87973 0.97080 1.61618 1.52107 1.13614 1.05470 1.22547 1.00329 0.95469 0.87755 0.91568 0.91409 0.91626 0.92328 0.92737 0.95498 0.91020 1.02353 0.95015 0.93108 0.92884 0.91098 0.89844 0.90596 0.88799 0.88685 0.92358 0.83769 0.91374 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 7.47 71.98 0.54 -3.16 16 2 C 0.08 2.92 2.77 44.91 0.12 3.05 16 3 C -0.17 -6.26 8.47 71.98 0.61 -5.66 16 4 N -0.53 -21.94 4.26 -850.42 -3.63 -25.57 16 5 C 0.20 10.35 3.18 85.56 0.27 10.62 16 6 C -0.51 -29.44 8.51 25.60 0.22 -29.23 16 7 H 0.06 3.20 6.92 -2.91 -0.02 3.18 16 8 C 0.00 0.09 5.46 84.66 0.46 0.55 16 9 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 10 Si 0.96 45.68 29.54 68.60 2.03 47.70 16 11 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 C 0.09 2.89 1.64 44.91 0.07 2.96 16 15 H 0.04 1.37 5.50 -2.39 -0.01 1.36 16 16 C -0.15 -4.00 8.22 71.98 0.59 -3.41 16 17 C -0.11 -3.74 2.09 -9.61 -0.02 -3.76 16 18 H 0.04 1.79 6.64 -2.38 -0.02 1.77 16 19 C -0.14 -3.64 6.40 31.99 0.20 -3.43 16 20 C 0.05 1.27 7.57 86.78 0.66 1.92 16 21 N -0.70 -21.32 7.39 -504.42 -3.73 -25.05 16 22 C 0.07 2.50 6.09 86.65 0.53 3.03 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.07 1.65 6.16 -2.38 -0.01 1.63 16 25 H 0.06 1.78 7.08 -2.39 -0.02 1.76 16 26 H 0.06 2.52 6.71 -2.39 -0.02 2.50 16 27 H 0.05 1.86 5.99 -2.39 -0.01 1.84 16 28 H 0.03 1.18 6.65 -2.39 -0.02 1.16 16 29 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 30 H -0.04 -2.40 6.23 -2.39 -0.01 -2.41 16 31 H 0.03 1.80 3.77 -2.39 -0.01 1.79 16 32 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.05 1.46 5.84 -2.39 -0.01 1.45 16 34 H 0.07 1.48 6.40 -2.39 -0.02 1.47 16 35 H 0.08 2.04 3.87 -2.39 -0.01 2.03 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.01 5.82 -2.39 -0.01 1.99 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.35 8.56 8.91 -89.69 -0.80 7.76 16 41 H 0.07 2.41 5.61 -2.39 -0.01 2.39 16 42 H 0.04 1.68 6.43 -2.39 -0.02 1.67 16 Total: -1.00 -65.68 297.22 -0.56 -66.24 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: 0.22 Total: 20.44 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 4.26 Total: -26.51 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -7.07 Total: -107.88 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -65.68 -0.56 -66.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400660539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.959 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds