Wall clock time and date at job start Mon Mar 30 2020 03:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47243 * 2 1 4 4 C 1.50699 * 109.47154 * 120.00086 * 2 1 3 5 5 H 1.08000 * 120.00210 * 119.99883 * 4 2 1 6 6 C 1.37878 * 119.99870 * 299.99835 * 4 2 1 7 7 N 1.31515 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 60.00463 * 8 6 4 10 10 H 1.48500 * 109.46722 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47158 * 300.00050 * 8 6 4 12 12 N 1.46904 * 109.47218 * 239.99942 * 2 1 3 13 13 C 1.46846 * 110.99942 * 306.04879 * 12 2 1 14 14 C 1.53035 * 109.52744 * 174.16069 * 13 12 2 15 15 C 1.53123 * 109.27774 * 59.17321 * 14 13 12 16 16 C 1.53114 * 109.16198 * 302.35270 * 15 14 13 17 17 H 1.09000 * 109.50493 * 297.71120 * 16 15 14 18 18 C 1.52997 * 109.50090 * 177.59717 * 16 15 14 19 19 N 1.46900 * 109.47529 * 65.19408 * 18 16 15 20 20 C 1.46897 * 110.99987 * 66.04704 * 19 18 16 21 21 C 1.46899 * 111.00079 * 189.99831 * 19 18 16 22 22 C 1.46844 * 111.00328 * 181.83725 * 12 2 1 23 23 H 1.09000 * 109.47212 * 300.00068 * 1 2 3 24 24 H 1.09001 * 109.47311 * 59.99959 * 1 2 3 25 25 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99677 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46456 * 294.17536 * 13 12 2 28 28 H 1.09003 * 109.46474 * 54.14041 * 13 12 2 29 29 H 1.08995 * 109.50534 * 179.12351 * 14 13 12 30 30 H 1.09011 * 109.49854 * 299.24031 * 14 13 12 31 31 H 1.09000 * 109.52219 * 182.44440 * 15 14 13 32 32 H 1.08998 * 109.51778 * 62.25946 * 15 14 13 33 33 H 1.09005 * 109.47278 * 185.19613 * 18 16 15 34 34 H 1.09000 * 109.47350 * 305.18966 * 18 16 15 35 35 H 1.09007 * 109.47494 * 59.99795 * 20 19 18 36 36 H 1.08994 * 109.47513 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.47059 * 300.00410 * 20 19 18 38 38 H 1.09000 * 109.46871 * 60.00227 * 21 19 18 39 39 H 1.08998 * 109.47112 * 180.02562 * 21 19 18 40 40 H 1.09003 * 109.47483 * 300.00394 * 21 19 18 41 41 H 1.09000 * 109.46271 * 305.85568 * 22 12 2 42 42 H 1.08998 * 109.46026 * 65.82128 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 1.4344 -2.0350 -1.3078 14 6 1.8505 -2.6686 -2.6372 15 6 3.3782 -2.7506 -2.7019 16 6 3.9643 -1.3455 -2.5382 17 1 3.6307 -0.7138 -3.3614 18 6 5.4921 -1.4259 -2.5417 19 7 5.9555 -1.8844 -3.8581 20 6 5.6555 -0.8905 -4.8974 21 6 7.3897 -2.2007 -3.8306 22 6 3.4869 -0.7503 -1.2117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7096 1.1618 3.4844 27 1 1.7897 -2.6537 -0.4837 28 1 0.3477 -1.9621 -1.2646 29 1 1.4288 -3.6710 -2.7104 30 1 1.4837 -2.0577 -3.4621 31 1 3.6805 -3.1614 -3.6652 32 1 3.7427 -3.3930 -1.9004 33 1 5.9083 -0.4402 -2.3331 34 1 5.8208 -2.1284 -1.7758 35 1 6.1559 0.0479 -4.6581 36 1 6.0086 -1.2553 -5.8618 37 1 4.5788 -0.7266 -4.9433 38 1 7.5739 -2.9893 -3.1011 39 1 7.7066 -2.5372 -4.8178 40 1 7.9531 -1.3099 -3.5526 41 1 3.8909 0.2557 -1.0987 42 1 3.8325 -1.3750 -0.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405085459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:43 Heat of formation + Delta-G solvation = -1.233722 kcal Electronic energy + Delta-G solvation = -18476.354625 eV Core-core repulsion = 15876.912963 eV Total energy + Delta-G solvation = -2599.441662 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.87692 -37.00795 -34.15334 -31.86706 -30.86737 -28.46429 -27.57377 -26.10280 -25.06978 -23.49748 -22.08533 -21.14576 -19.28258 -18.95560 -16.20249 -15.48067 -15.32588 -15.16335 -14.57806 -14.24518 -13.83126 -13.36727 -13.24680 -12.99873 -12.62135 -12.40539 -12.03535 -11.77394 -11.69246 -11.51395 -11.29277 -11.12029 -10.96324 -10.71014 -10.38420 -10.30379 -10.21352 -10.10168 -9.89790 -9.55373 -9.26421 -9.11783 -8.36152 -8.27528 -7.05129 -5.95599 -4.08832 3.28884 3.34026 3.36613 4.01798 4.41541 4.94426 5.16000 5.24855 5.29444 5.30105 5.39531 5.49800 5.57488 5.60216 5.77045 5.80565 5.86636 5.91986 6.05488 6.09706 6.23159 6.30374 6.42627 6.58385 6.61393 6.63818 6.81768 6.87148 6.99837 7.02389 7.09636 7.10787 7.14002 7.23364 7.63136 7.75892 8.03388 8.21593 8.41513 8.50873 9.01620 9.58625 11.03819 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.006412 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.919484 B = 4366.041563 C = 4814.806273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.207 3.793 3 H 0.038 0.962 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.886 3.114 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 N -0.537 5.537 13 C 0.059 3.941 14 C -0.118 4.118 15 C -0.100 4.100 16 C -0.081 4.081 17 H 0.072 0.928 18 C 0.060 3.940 19 N -0.544 5.544 20 C 0.022 3.978 21 C 0.025 3.975 22 C 0.073 3.927 23 H 0.083 0.917 24 H 0.014 0.986 25 H 0.028 0.972 26 H 0.261 0.739 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.033 0.967 34 H 0.072 0.928 35 H 0.023 0.977 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.022 0.978 41 H 0.059 0.941 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.485 -4.739 -11.357 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.101 3.899 3 H 0.055 0.945 4 C -0.579 4.579 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.261 5.261 13 C -0.070 4.070 14 C -0.156 4.156 15 C -0.138 4.138 16 C -0.100 4.100 17 H 0.090 0.910 18 C -0.068 4.068 19 N -0.268 5.268 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.057 4.057 23 H 0.102 0.898 24 H 0.033 0.967 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 6.989 -4.765 -11.732 14.463 hybrid contribution 1.091 -0.163 1.954 2.244 sum 8.080 -4.928 -9.778 13.608 Atomic orbital electron populations 1.21853 0.97910 0.99139 1.00249 1.19249 0.92168 0.94082 0.84420 0.94461 1.21696 1.31692 1.12790 0.91749 0.92694 1.24908 0.94892 0.94857 0.98808 1.69871 1.36525 1.22761 1.23465 0.86753 0.79187 0.79901 0.82721 1.20410 1.21241 1.20364 1.62392 1.05210 1.16686 1.41774 1.21942 0.99571 0.90561 0.94900 1.21654 0.95847 0.99303 0.98820 1.21441 0.95022 0.96112 1.01201 1.21243 0.92313 0.97322 0.99159 0.91006 1.22193 0.96314 0.98500 0.89806 1.61969 1.15726 1.43234 1.05866 1.22426 1.02299 0.93103 0.94804 1.22360 0.87951 0.99945 1.02096 1.21786 0.89995 0.99602 0.94283 0.89838 0.96686 0.95279 0.92905 0.94969 0.91312 0.92898 0.92176 0.91890 0.93098 0.94877 0.90988 0.95883 0.91932 0.90729 0.91534 0.91743 0.95963 0.92242 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.55 37.15 0.32 -2.96 16 2 C 0.21 5.24 2.45 -68.87 -0.17 5.07 16 3 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.54 -14.61 7.19 -34.44 -0.25 -14.86 16 5 H 0.05 1.50 5.84 -52.49 -0.31 1.19 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.61 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.54 -11.64 4.70 -228.09 -1.07 -12.71 16 13 C 0.06 1.17 4.76 -3.84 -0.02 1.16 16 14 C -0.12 -1.93 6.09 -26.65 -0.16 -2.09 16 15 C -0.10 -1.56 5.14 -26.61 -0.14 -1.69 16 16 C -0.08 -1.29 2.27 -90.55 -0.21 -1.50 16 17 H 0.07 1.17 6.34 -51.93 -0.33 0.84 16 18 C 0.06 0.85 4.35 -3.83 -0.02 0.83 16 19 N -0.54 -6.83 4.53 -251.26 -1.14 -7.97 16 20 C 0.02 0.25 9.33 60.06 0.56 0.81 16 21 C 0.02 0.26 9.57 60.06 0.57 0.84 16 22 C 0.07 1.43 4.29 -3.84 -0.02 1.42 16 23 H 0.08 2.24 6.07 -51.93 -0.32 1.92 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.03 0.68 6.20 -51.93 -0.32 0.36 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.70 7.03 -51.92 -0.37 0.34 16 28 H 0.07 1.40 5.87 -51.93 -0.30 1.10 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 31 H 0.06 0.92 7.84 -51.93 -0.41 0.51 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 37 H 0.07 0.88 6.37 -51.93 -0.33 0.55 16 38 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 42 H 0.04 0.79 6.57 -51.93 -0.34 0.45 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -27.77 312.81 -9.15 -36.92 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.64 Total: -1.42 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: 0.39 Total: -11.23 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -1.58 Total: -45.28 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.77 -9.15 -36.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405085459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.683 kcal (2) G-P(sol) polarization free energy of solvation -27.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds