Wall clock time and date at job start Mon Mar 30 2020 03:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47243 * 2 1 4 4 C 1.50699 * 109.47154 * 120.00086 * 2 1 3 5 5 H 1.08000 * 120.00210 * 119.99883 * 4 2 1 6 6 C 1.37878 * 119.99870 * 299.99835 * 4 2 1 7 7 N 1.31515 * 120.00025 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99697 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47021 * 60.00463 * 8 6 4 10 10 H 1.48500 * 109.46722 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47158 * 300.00050 * 8 6 4 12 12 N 1.46904 * 109.47218 * 239.99942 * 2 1 3 13 13 C 1.46846 * 110.99942 * 306.04879 * 12 2 1 14 14 C 1.53035 * 109.52744 * 174.16069 * 13 12 2 15 15 C 1.53123 * 109.27774 * 59.17321 * 14 13 12 16 16 C 1.53114 * 109.16198 * 302.35270 * 15 14 13 17 17 H 1.09000 * 109.50493 * 297.71120 * 16 15 14 18 18 C 1.52997 * 109.50090 * 177.59717 * 16 15 14 19 19 N 1.46900 * 109.47529 * 65.19408 * 18 16 15 20 20 C 1.46897 * 110.99987 * 66.04704 * 19 18 16 21 21 C 1.46899 * 111.00079 * 189.99831 * 19 18 16 22 22 C 1.46844 * 111.00328 * 181.83725 * 12 2 1 23 23 H 1.09000 * 109.47212 * 300.00068 * 1 2 3 24 24 H 1.09001 * 109.47311 * 59.99959 * 1 2 3 25 25 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 26 26 H 0.96996 * 119.99677 * 180.02562 * 7 6 4 27 27 H 1.09008 * 109.46456 * 294.17536 * 13 12 2 28 28 H 1.09003 * 109.46474 * 54.14041 * 13 12 2 29 29 H 1.08995 * 109.50534 * 179.12351 * 14 13 12 30 30 H 1.09011 * 109.49854 * 299.24031 * 14 13 12 31 31 H 1.09000 * 109.52219 * 182.44440 * 15 14 13 32 32 H 1.08998 * 109.51778 * 62.25946 * 15 14 13 33 33 H 1.09005 * 109.47278 * 185.19613 * 18 16 15 34 34 H 1.09000 * 109.47350 * 305.18966 * 18 16 15 35 35 H 1.09007 * 109.47494 * 59.99795 * 20 19 18 36 36 H 1.08994 * 109.47513 * 180.02562 * 20 19 18 37 37 H 1.09006 * 109.47059 * 300.00410 * 20 19 18 38 38 H 1.09000 * 109.46871 * 60.00227 * 21 19 18 39 39 H 1.08998 * 109.47112 * 180.02562 * 21 19 18 40 40 H 1.09003 * 109.47483 * 300.00394 * 21 19 18 41 41 H 1.09000 * 109.46271 * 305.85568 * 22 12 2 42 42 H 1.08998 * 109.46026 * 65.82128 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8063 -1.1209 4.0081 10 1 1.8269 -0.4199 5.2204 11 1 1.8257 -2.5203 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 1.4344 -2.0350 -1.3078 14 6 1.8505 -2.6686 -2.6372 15 6 3.3782 -2.7506 -2.7019 16 6 3.9643 -1.3455 -2.5382 17 1 3.6307 -0.7138 -3.3614 18 6 5.4921 -1.4259 -2.5417 19 7 5.9555 -1.8844 -3.8581 20 6 5.6555 -0.8905 -4.8974 21 6 7.3897 -2.2007 -3.8306 22 6 3.4869 -0.7503 -1.2117 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7096 1.1618 3.4844 27 1 1.7897 -2.6537 -0.4837 28 1 0.3477 -1.9621 -1.2646 29 1 1.4288 -3.6710 -2.7104 30 1 1.4837 -2.0577 -3.4621 31 1 3.6805 -3.1614 -3.6652 32 1 3.7427 -3.3930 -1.9004 33 1 5.9083 -0.4402 -2.3331 34 1 5.8208 -2.1284 -1.7758 35 1 6.1559 0.0479 -4.6581 36 1 6.0086 -1.2553 -5.8618 37 1 4.5788 -0.7266 -4.9433 38 1 7.5739 -2.9893 -3.1011 39 1 7.7066 -2.5372 -4.8178 40 1 7.9531 -1.3099 -3.5526 41 1 3.8909 0.2557 -1.0987 42 1 3.8325 -1.3750 -0.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405085459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:42 Heat of formation + Delta-G solvation = -18.830675 kcal Electronic energy + Delta-G solvation = -18477.117686 eV Core-core repulsion = 15876.912963 eV Total energy + Delta-G solvation = -2600.204723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.34165 -38.26477 -35.85459 -33.72966 -32.28459 -30.29503 -28.43035 -27.54430 -26.97834 -25.06012 -23.42844 -22.52407 -20.92748 -20.49711 -18.20878 -17.14717 -16.58189 -16.19906 -16.14957 -15.57761 -15.36925 -14.94892 -14.83141 -14.43351 -14.23024 -13.64519 -13.36517 -13.20787 -12.99108 -12.84719 -12.79426 -12.57182 -12.53793 -12.45996 -12.12530 -12.02262 -11.97895 -11.75086 -11.42217 -11.20651 -10.97741 -10.81956 -10.48114 -9.24979 -8.92166 -8.04230 -6.27256 1.36859 1.37215 1.45003 2.38851 2.99645 3.14567 3.47699 3.92250 4.05545 4.16358 4.32250 4.35742 4.53178 4.55979 4.58179 4.65885 4.72248 4.76854 4.83142 4.86274 4.90177 5.03562 5.03933 5.07574 5.09270 5.10999 5.14116 5.25861 5.32032 5.36482 5.47424 5.52171 5.63966 5.70926 5.99917 6.08638 6.17178 6.21404 6.39533 6.70210 6.93701 7.43750 8.91120 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.027664 B = 0.006412 C = 0.005814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.919484 B = 4366.041563 C = 4814.806273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.209 3.791 3 H 0.003 0.997 4 C -0.548 4.548 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.060 3.940 14 C -0.110 4.110 15 C -0.093 4.093 16 C -0.069 4.069 17 H 0.074 0.926 18 C 0.067 3.933 19 N -0.551 5.551 20 C 0.021 3.979 21 C 0.024 3.976 22 C 0.077 3.923 23 H 0.059 0.941 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.010 0.990 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.027 0.973 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.045 0.955 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.338 -6.131 -12.638 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.102 3.898 3 H 0.021 0.979 4 C -0.587 4.587 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.773 3.227 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.068 4.068 14 C -0.147 4.147 15 C -0.130 4.130 16 C -0.088 4.088 17 H 0.092 0.908 18 C -0.061 4.061 19 N -0.275 5.275 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.053 4.053 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.028 0.972 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.063 0.937 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 7.852 -6.167 -13.031 16.416 hybrid contribution 0.838 0.296 2.314 2.479 sum 8.690 -5.870 -10.717 14.994 Atomic orbital electron populations 1.21671 0.97335 0.99204 0.99717 1.19060 0.92609 0.92579 0.85584 0.97946 1.21873 1.31559 1.12580 0.92735 0.93381 1.25628 0.95145 0.95572 1.01574 1.69994 1.37338 1.23832 1.24066 0.85793 0.78672 0.78886 0.79388 1.20049 1.20671 1.19890 1.62358 1.06403 1.17709 1.39556 1.21989 0.99076 0.89254 0.96503 1.21608 0.96484 1.00248 0.96394 1.21392 0.94328 0.95418 1.01899 1.21105 0.93772 0.97475 0.96488 0.90774 1.22020 0.94775 0.98260 0.91057 1.61963 1.17189 1.43399 1.04906 1.22466 1.01941 0.92975 0.95278 1.22424 0.86565 1.00091 1.03301 1.21783 0.88762 0.98691 0.96024 0.92236 0.95244 0.94782 0.92861 0.97193 0.91868 0.90593 0.91430 0.89961 0.93788 0.95427 0.91334 0.95944 0.89976 0.91420 0.91346 0.89944 0.95830 0.93685 0.96703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.55 71.98 0.62 -5.42 16 2 C 0.21 10.86 2.45 44.17 0.11 10.96 16 3 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 4 C -0.55 -30.30 7.19 25.60 0.18 -30.12 16 5 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -52.84 11.32 21.45 0.24 -52.60 16 8 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 12 N -0.54 -23.49 4.70 -875.53 -4.11 -27.60 16 13 C 0.06 2.37 4.76 86.33 0.41 2.78 16 14 C -0.11 -3.33 6.09 30.65 0.19 -3.14 16 15 C -0.09 -2.68 5.14 30.67 0.16 -2.52 16 16 C -0.07 -2.13 2.27 -10.75 -0.02 -2.16 16 17 H 0.07 2.29 6.34 -2.39 -0.02 2.27 16 18 C 0.07 1.82 4.35 86.30 0.38 2.19 16 19 N -0.55 -12.50 4.53 -948.85 -4.30 -16.80 16 20 C 0.02 0.43 9.33 127.69 1.19 1.62 16 21 C 0.02 0.44 9.57 127.69 1.22 1.66 16 22 C 0.08 3.07 4.29 86.32 0.37 3.44 16 23 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.03 1.61 6.20 -2.39 -0.01 1.60 16 26 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 27 H 0.01 0.43 7.03 -2.38 -0.02 0.41 16 28 H 0.06 2.54 5.87 -2.39 -0.01 2.53 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.08 2.13 7.84 -2.39 -0.02 2.11 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.03 0.77 8.12 -2.38 -0.02 0.75 16 34 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 35 H 0.02 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 37 H 0.07 1.45 6.37 -2.38 -0.02 1.43 16 38 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 39 H 0.08 1.22 8.12 -2.39 -0.02 1.20 16 40 H 0.02 0.42 8.14 -2.39 -0.02 0.41 16 41 H 0.04 1.89 8.12 -2.39 -0.02 1.87 16 42 H 0.01 0.65 6.57 -2.39 -0.02 0.64 16 Total: -1.00 -59.47 312.81 0.06 -59.41 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.96 Total: 10.64 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 5.25 Total: -19.10 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -8.17 Total: -97.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -59.47 0.06 -59.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405085459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.577 kcal (2) G-P(sol) polarization free energy of solvation -59.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds