Wall clock time and date at job start Mon Mar 30 2020 03:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00386 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00673 * 8 6 4 12 12 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 13 13 C 1.46848 * 110.99976 * 176.04295 * 12 2 1 14 14 C 1.53032 * 109.52567 * 174.16209 * 13 12 2 15 15 C 1.53119 * 109.27984 * 59.17911 * 14 13 12 16 16 C 1.53118 * 109.16113 * 302.34768 * 15 14 13 17 17 H 1.08999 * 109.50486 * 297.71133 * 16 15 14 18 18 C 1.53004 * 109.50456 * 177.63368 * 16 15 14 19 19 N 1.46894 * 109.47316 * 65.00036 * 18 16 15 20 20 C 1.46908 * 110.99896 * 66.04430 * 19 18 16 21 21 C 1.46896 * 111.00309 * 189.99904 * 19 18 16 22 22 C 1.46850 * 111.00020 * 51.83385 * 12 2 1 23 23 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46009 * 294.18040 * 13 12 2 28 28 H 1.09004 * 109.45918 * 54.14444 * 13 12 2 29 29 H 1.08998 * 109.50789 * 179.12374 * 14 13 12 30 30 H 1.09009 * 109.50192 * 299.24154 * 14 13 12 31 31 H 1.08994 * 109.52462 * 62.25209 * 15 14 13 32 32 H 1.09000 * 109.52820 * 182.44523 * 15 14 13 33 33 H 1.09006 * 109.46855 * 185.00397 * 18 16 15 34 34 H 1.08996 * 109.46909 * 304.99712 * 18 16 15 35 35 H 1.08997 * 109.46645 * 60.00115 * 20 19 18 36 36 H 1.09001 * 109.46826 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.47265 * 300.00333 * 20 19 18 38 38 H 1.09002 * 109.46889 * 60.00254 * 21 19 18 39 39 H 1.09002 * 109.47349 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47139 * 300.00636 * 21 19 18 41 41 H 1.08993 * 109.46771 * 305.85878 * 22 12 2 42 42 H 1.09009 * 109.46253 * 65.82335 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1675 -1.5866 -4.8165 11 1 3.1471 -0.1858 -4.8162 12 7 2.0197 -0.6925 1.1994 13 6 3.4846 -0.7945 1.1870 14 6 3.9673 -1.3879 2.5124 15 6 3.3422 -2.7725 2.7040 16 6 1.8168 -2.6451 2.6647 17 1 1.4830 -2.0135 3.4880 18 6 1.1847 -4.0322 2.7963 19 7 1.4939 -4.5876 4.1206 20 6 0.8468 -3.8064 5.1832 21 6 1.1107 -6.0034 4.2003 22 6 1.3964 -2.0152 1.3347 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7093 1.1618 -3.4844 27 1 3.7967 -1.4393 0.3654 28 1 3.9166 0.1974 1.0543 29 1 5.0534 -1.4780 2.4968 30 1 3.6673 -0.7365 3.3334 31 1 3.6730 -3.4353 1.9044 32 1 3.6488 -3.1807 3.6670 33 1 0.1040 -3.9516 2.6793 34 1 1.5857 -4.6889 2.0242 35 1 -0.2336 -3.8240 5.0404 36 1 1.0926 -4.2389 6.1531 37 1 1.2017 -2.7765 5.1445 38 1 1.6574 -6.5708 3.4471 39 1 1.3509 -6.3897 5.1909 40 1 0.0398 -6.1006 4.0218 41 1 0.3119 -1.9101 1.3094 42 1 1.7184 -2.6543 0.5124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405085466.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:46 Heat of formation + Delta-G solvation = -18.451662 kcal Electronic energy + Delta-G solvation = -18519.535673 eV Core-core repulsion = 15919.347385 eV Total energy + Delta-G solvation = -2600.188288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.35577 -38.23293 -35.86475 -33.70779 -32.45117 -30.03344 -28.42397 -27.71185 -26.95639 -25.13968 -23.51856 -22.09043 -21.17006 -20.50573 -18.24399 -17.20348 -16.54165 -16.16091 -16.08568 -15.56618 -15.40758 -14.95458 -14.74780 -14.50726 -14.11802 -13.86270 -13.36289 -13.19371 -13.01128 -12.88486 -12.68274 -12.59473 -12.55893 -12.36269 -12.12827 -12.08201 -11.97337 -11.70864 -11.36796 -11.25686 -10.98240 -10.81492 -10.48865 -9.23758 -8.92146 -8.04454 -6.27445 1.34674 1.37422 1.47376 2.38791 3.01086 3.14042 3.47831 3.92792 4.05610 4.16991 4.32560 4.35690 4.53969 4.56578 4.59290 4.67020 4.72222 4.74857 4.83253 4.86532 4.93322 5.01441 5.04410 5.07020 5.10506 5.11291 5.12245 5.26192 5.29644 5.36197 5.47097 5.54353 5.63207 5.70832 5.98780 6.10058 6.18019 6.21234 6.39741 6.70183 6.93931 7.43747 8.91126 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029511 B = 0.006161 C = 0.006027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.585454 B = 4543.924721 C = 4644.734700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.208 3.792 3 H 0.004 0.996 4 C -0.546 4.546 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.948 3.052 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.280 1.280 12 N -0.537 5.537 13 C 0.065 3.935 14 C -0.108 4.108 15 C -0.093 4.093 16 C -0.071 4.071 17 H 0.074 0.926 18 C 0.068 3.932 19 N -0.552 5.552 20 C 0.021 3.979 21 C 0.024 3.976 22 C 0.072 3.928 23 H 0.028 0.972 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.262 0.738 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.068 0.932 35 H 0.023 0.977 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.060 0.940 42 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.320 -10.341 13.054 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H 0.022 0.978 4 C -0.585 4.585 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.774 3.226 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.260 5.260 13 C -0.064 4.064 14 C -0.146 4.146 15 C -0.131 4.131 16 C -0.090 4.090 17 H 0.093 0.907 18 C -0.061 4.061 19 N -0.275 5.275 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.057 4.057 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.042 0.958 41 H 0.079 0.921 42 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 1.612 -9.916 13.404 16.751 hybrid contribution -0.535 -0.524 -2.235 2.357 sum 1.077 -10.440 11.169 15.326 Atomic orbital electron populations 1.21686 0.97424 0.99126 0.99732 1.19076 0.92527 0.92703 0.85620 0.97781 1.21934 1.31383 1.12524 0.92705 0.93345 1.25630 0.95156 0.95581 1.01600 1.70007 1.37462 1.23887 1.23941 0.85669 0.78228 0.78690 0.80030 1.19780 1.20466 1.20540 1.62364 1.05833 1.18454 1.39389 1.21880 0.88672 0.99076 0.96759 1.21596 0.99873 0.96881 0.96273 1.21391 0.94011 0.95843 1.01806 1.21122 0.96365 0.94912 0.96578 0.90744 1.22017 0.97512 0.95522 0.91032 1.61956 1.59131 1.03388 1.03066 1.22465 0.96227 0.99035 0.94926 1.22420 0.98502 0.88109 1.03339 1.21903 0.98595 0.89522 0.95693 0.95263 0.92227 0.94851 0.92878 0.96731 0.93255 0.90681 0.91458 0.93829 0.89970 0.95241 0.91371 0.95857 0.90049 0.91435 0.91381 0.90006 0.95758 0.92131 0.97215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.47 71.98 0.61 -5.43 16 2 C 0.21 10.80 2.49 44.17 0.11 10.91 16 3 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 4 C -0.55 -30.19 7.21 25.60 0.18 -30.00 16 5 H 0.05 2.71 5.84 -2.91 -0.02 2.69 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 N -0.54 -23.50 4.71 -875.49 -4.12 -27.62 16 13 C 0.06 2.61 4.97 86.32 0.43 3.04 16 14 C -0.11 -3.34 6.09 30.64 0.19 -3.16 16 15 C -0.09 -2.69 5.14 30.67 0.16 -2.54 16 16 C -0.07 -2.15 2.27 -10.74 -0.02 -2.17 16 17 H 0.07 2.27 6.34 -2.39 -0.02 2.25 16 18 C 0.07 1.79 4.35 86.31 0.38 2.17 16 19 N -0.55 -12.35 4.52 -948.84 -4.29 -16.64 16 20 C 0.02 0.42 9.33 127.69 1.19 1.61 16 21 C 0.02 0.44 9.57 127.69 1.22 1.66 16 22 C 0.07 2.81 4.02 86.33 0.35 3.16 16 23 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 25 H 0.03 1.57 6.19 -2.39 -0.01 1.56 16 26 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 27 H 0.01 0.65 6.46 -2.39 -0.02 0.63 16 28 H 0.05 2.07 8.12 -2.38 -0.02 2.05 16 29 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 2.13 7.83 -2.39 -0.02 2.11 16 33 H 0.03 0.79 8.12 -2.38 -0.02 0.78 16 34 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 35 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 37 H 0.07 1.43 6.37 -2.39 -0.02 1.41 16 38 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 39 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 40 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 2.43 5.84 -2.39 -0.01 2.42 16 42 H 0.01 0.42 7.17 -2.38 -0.02 0.40 16 Total: -1.00 -59.54 312.72 0.05 -59.49 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.96 Total: 10.44 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 5.24 Total: -19.20 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -8.17 Total: -96.85 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.54 0.05 -59.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405085466.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.040 kcal (2) G-P(sol) polarization free energy of solvation -59.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds