Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.50701 * 109.46876 * 120.00304 * 2 1 3 5 5 H 1.07999 * 120.00239 * 119.99892 * 4 2 1 6 6 C 1.37874 * 119.99988 * 299.99324 * 4 2 1 7 7 N 1.31517 * 119.99890 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46930 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47087 * 120.00185 * 8 6 4 11 11 H 1.48493 * 109.47424 * 240.00361 * 8 6 4 12 12 N 1.46905 * 109.46911 * 239.99685 * 2 1 3 13 13 C 1.46846 * 111.00206 * 303.05336 * 12 2 1 14 14 C 1.53038 * 109.52152 * 174.16271 * 13 12 2 15 15 C 1.53106 * 109.28051 * 59.17764 * 14 13 12 16 16 C 1.53121 * 109.21355 * 302.31377 * 15 14 13 17 17 C 1.46846 * 110.99653 * 178.84039 * 12 2 1 18 18 H 1.08992 * 109.46400 * 65.82856 * 17 12 2 19 19 C 1.52998 * 109.46222 * 305.85483 * 17 12 2 20 20 N 1.46896 * 109.46972 * 68.74482 * 19 17 12 21 21 C 1.46900 * 111.00376 * 76.64354 * 20 19 17 22 22 C 1.46900 * 111.00046 * 200.60244 * 20 19 17 23 23 H 1.08994 * 109.46621 * 306.90126 * 1 2 3 24 24 H 1.08997 * 109.46878 * 66.90066 * 1 2 3 25 25 H 1.09001 * 109.47112 * 186.90217 * 1 2 3 26 26 H 0.97000 * 120.00244 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46498 * 54.13955 * 13 12 2 28 28 H 1.09005 * 109.45035 * 294.17064 * 13 12 2 29 29 H 1.09002 * 109.50009 * 299.23031 * 14 13 12 30 30 H 1.09004 * 109.49860 * 179.12274 * 14 13 12 31 31 H 1.09003 * 109.52935 * 62.24892 * 15 14 13 32 32 H 1.09007 * 109.52412 * 182.37958 * 15 14 13 33 33 H 1.09002 * 109.50664 * 177.63411 * 16 15 14 34 34 H 1.09009 * 109.50157 * 297.74236 * 16 15 14 35 35 H 1.08999 * 109.47049 * 188.73889 * 19 17 12 36 36 H 1.08996 * 109.47631 * 308.73764 * 19 17 12 37 37 H 1.09003 * 109.46840 * 63.82515 * 21 20 19 38 38 H 1.08996 * 109.47154 * 183.82681 * 21 20 19 39 39 H 1.08995 * 109.46900 * 303.83040 * 21 20 19 40 40 H 1.08999 * 109.47358 * 59.99140 * 22 20 19 41 41 H 1.09004 * 109.47438 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46620 * 299.99634 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6038 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1995 13 6 1.4901 -2.0604 -1.2704 14 6 1.9007 -2.6995 -2.5990 15 6 3.4283 -2.7177 -2.7004 16 6 3.9587 -1.2867 -2.5761 17 6 3.4874 -0.6882 -1.2473 18 1 3.8794 -1.2827 -0.4222 19 6 3.9970 0.7494 -1.1269 20 7 3.7292 1.2520 0.2272 21 6 4.6885 0.6999 1.1930 22 6 3.7400 2.7207 0.2553 23 1 -0.3632 0.6170 0.8218 24 1 -0.3633 0.4032 -0.9453 25 1 -0.3633 -1.0202 0.1235 26 1 0.7083 1.1609 3.4844 27 1 0.4026 -2.0329 -1.2013 28 1 1.8918 -2.6484 -0.4451 29 1 1.4880 -2.1197 -3.4246 30 1 1.5207 -3.7201 -2.6446 31 1 3.8396 -3.3296 -1.8975 32 1 3.7245 -3.1336 -3.6635 33 1 5.0483 -1.2985 -2.6056 34 1 3.5784 -0.6847 -3.4015 35 1 5.0701 0.7716 -1.3170 36 1 3.4859 1.3784 -1.8557 37 1 5.6925 1.0449 0.9457 38 1 4.4265 1.0341 2.1969 39 1 4.6584 -0.3889 1.1531 40 1 2.9722 3.1026 -0.4176 41 1 3.5396 3.0662 1.2695 42 1 4.7169 3.0830 -0.0652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000405191891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = 23.326660 kcal Electronic energy + Delta-G solvation = -19680.308402 eV Core-core repulsion = 17081.931758 eV Total energy + Delta-G solvation = -2598.376644 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.90315 -36.02380 -33.96803 -31.56357 -30.89718 -28.08742 -26.84109 -25.98980 -24.82722 -23.40007 -21.79276 -20.06407 -19.68826 -18.73404 -15.89025 -15.36756 -14.82656 -14.60752 -14.26422 -13.84998 -13.61420 -13.30901 -12.81866 -12.63820 -12.30096 -12.08624 -11.65940 -11.36591 -11.16094 -10.95662 -10.93073 -10.83019 -10.78227 -10.55340 -10.29894 -10.26832 -10.06565 -9.96822 -9.76949 -9.48235 -9.15426 -8.80891 -8.12230 -6.95849 -6.75408 -5.68056 -3.69943 3.35274 3.44939 3.47538 4.60790 4.76881 5.10704 5.43176 5.47653 5.54356 5.60782 5.80925 5.90757 5.99247 6.01905 6.07936 6.17492 6.21566 6.26480 6.36945 6.40336 6.45797 6.50661 6.51487 6.61103 6.66909 6.81753 6.86658 6.96374 7.10616 7.21632 7.29908 7.51760 7.93862 7.94264 7.99257 8.03151 8.39393 8.53545 8.72134 8.85279 9.37001 9.89276 11.34567 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.011500 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.419692 B = 2434.229902 C = 2890.136714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.196 3.804 3 H 0.097 0.903 4 C -0.490 4.490 5 H 0.041 0.959 6 C 0.073 3.927 7 N -0.887 5.887 8 Si 0.862 3.138 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.290 1.290 12 N -0.529 5.529 13 C 0.060 3.940 14 C -0.117 4.117 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.098 3.902 18 H 0.044 0.956 19 C 0.066 3.934 20 N -0.490 5.490 21 C 0.047 3.953 22 C 0.032 3.968 23 H 0.077 0.923 24 H 0.007 0.993 25 H 0.018 0.982 26 H 0.251 0.749 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.020 0.980 36 H 0.069 0.931 37 H -0.005 1.005 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -1.181 -7.669 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.090 3.910 3 H 0.114 0.886 4 C -0.530 4.530 5 H 0.059 0.941 6 C -0.126 4.126 7 N -0.528 5.528 8 Si 0.691 3.309 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.217 1.217 12 N -0.254 5.254 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.152 4.152 16 C -0.151 4.151 17 C -0.011 4.011 18 H 0.061 0.939 19 C -0.062 4.062 20 N -0.212 5.212 21 C -0.101 4.101 22 C -0.116 4.116 23 H 0.095 0.905 24 H 0.026 0.974 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.014 0.986 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 4.801 -0.949 -7.789 9.199 hybrid contribution 1.434 -0.837 1.665 2.351 sum 6.235 -1.787 -6.124 8.921 Atomic orbital electron populations 1.21922 0.99638 0.99101 0.98513 1.19903 0.90068 0.97793 0.83256 0.88592 1.21434 1.29336 1.10462 0.91726 0.94069 1.24645 0.95673 0.94789 0.97536 1.69889 1.37868 1.23135 1.21925 0.87057 0.78634 0.79912 0.85289 1.20442 1.21527 1.21682 1.62545 1.05524 1.14241 1.43118 1.21893 0.99808 0.90969 0.94232 1.21638 0.95158 0.99271 0.99474 1.21499 0.96603 0.96894 1.00238 1.21652 0.98617 0.96022 0.98804 1.21353 0.90740 0.94437 0.94616 0.93860 1.22104 0.96419 0.96742 0.90963 1.62363 1.48572 1.05564 1.04684 1.22242 0.90208 1.00967 0.96687 1.22308 0.98015 0.89005 1.02287 0.90456 0.97431 0.96279 0.93910 0.91479 0.95151 0.92094 0.93120 0.92841 0.93149 0.93081 0.91916 0.96163 0.91259 0.98627 0.92039 0.91352 0.92017 0.91664 0.97820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.31 37.16 0.31 -2.96 16 2 C 0.20 4.68 1.83 -68.86 -0.13 4.55 16 3 H 0.10 2.45 4.80 -51.93 -0.25 2.20 16 4 C -0.49 -12.53 4.34 -34.44 -0.15 -12.68 16 5 H 0.04 1.11 5.74 -52.49 -0.30 0.80 16 6 C 0.07 1.95 5.30 -17.82 -0.09 1.85 16 7 N -0.89 -24.50 11.40 55.43 0.63 -23.87 16 8 Si 0.86 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 12 N -0.53 -11.07 4.51 -220.05 -0.99 -12.07 16 13 C 0.06 1.18 4.79 -3.83 -0.02 1.17 16 14 C -0.12 -1.89 6.09 -26.66 -0.16 -2.05 16 15 C -0.11 -1.72 6.00 -26.61 -0.16 -1.88 16 16 C -0.11 -1.76 5.38 -26.58 -0.14 -1.91 16 17 C 0.10 1.86 1.77 -67.65 -0.12 1.74 16 18 H 0.04 0.93 5.29 -51.93 -0.27 0.66 16 19 C 0.07 1.20 4.21 -3.83 -0.02 1.18 16 20 N -0.49 -9.75 1.13 -251.26 -0.28 -10.03 16 21 C 0.05 0.92 8.18 60.06 0.49 1.41 16 22 C 0.03 0.58 9.09 60.06 0.55 1.12 16 23 H 0.08 2.07 6.29 -51.93 -0.33 1.74 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.02 0.45 6.63 -51.93 -0.34 0.11 16 26 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.07 1.39 6.08 -51.93 -0.32 1.07 16 28 H 0.03 0.66 6.84 -51.93 -0.36 0.31 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.02 0.34 7.97 -51.93 -0.41 -0.08 16 36 H 0.07 1.25 7.87 -51.93 -0.41 0.84 16 37 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.42 6.00 -51.93 -0.31 1.10 16 40 H 0.06 1.08 8.07 -51.93 -0.42 0.66 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -26.78 302.63 -8.25 -35.03 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -7.50 Total: -1.26 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.36 Total: -8.46 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.64 Total: -45.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.78 -8.25 -35.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405191891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.356 kcal (2) G-P(sol) polarization free energy of solvation -26.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds