Wall clock time and date at job start Mon Mar 30 2020 03:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47088 * 2 1 4 4 C 1.50701 * 109.46876 * 120.00304 * 2 1 3 5 5 H 1.07999 * 120.00239 * 119.99892 * 4 2 1 6 6 C 1.37874 * 119.99988 * 299.99324 * 4 2 1 7 7 N 1.31517 * 119.99890 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00273 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46930 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47087 * 120.00185 * 8 6 4 11 11 H 1.48493 * 109.47424 * 240.00361 * 8 6 4 12 12 N 1.46905 * 109.46911 * 239.99685 * 2 1 3 13 13 C 1.46846 * 111.00206 * 303.05336 * 12 2 1 14 14 C 1.53038 * 109.52152 * 174.16271 * 13 12 2 15 15 C 1.53106 * 109.28051 * 59.17764 * 14 13 12 16 16 C 1.53121 * 109.21355 * 302.31377 * 15 14 13 17 17 C 1.46846 * 110.99653 * 178.84039 * 12 2 1 18 18 H 1.08992 * 109.46400 * 65.82856 * 17 12 2 19 19 C 1.52998 * 109.46222 * 305.85483 * 17 12 2 20 20 N 1.46896 * 109.46972 * 68.74482 * 19 17 12 21 21 C 1.46900 * 111.00376 * 76.64354 * 20 19 17 22 22 C 1.46900 * 111.00046 * 200.60244 * 20 19 17 23 23 H 1.08994 * 109.46621 * 306.90126 * 1 2 3 24 24 H 1.08997 * 109.46878 * 66.90066 * 1 2 3 25 25 H 1.09001 * 109.47112 * 186.90217 * 1 2 3 26 26 H 0.97000 * 120.00244 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46498 * 54.13955 * 13 12 2 28 28 H 1.09005 * 109.45035 * 294.17064 * 13 12 2 29 29 H 1.09002 * 109.50009 * 299.23031 * 14 13 12 30 30 H 1.09004 * 109.49860 * 179.12274 * 14 13 12 31 31 H 1.09003 * 109.52935 * 62.24892 * 15 14 13 32 32 H 1.09007 * 109.52412 * 182.37958 * 15 14 13 33 33 H 1.09002 * 109.50664 * 177.63411 * 16 15 14 34 34 H 1.09009 * 109.50157 * 297.74236 * 16 15 14 35 35 H 1.08999 * 109.47049 * 188.73889 * 19 17 12 36 36 H 1.08996 * 109.47631 * 308.73764 * 19 17 12 37 37 H 1.09003 * 109.46840 * 63.82515 * 21 20 19 38 38 H 1.08996 * 109.47154 * 183.82681 * 21 20 19 39 39 H 1.08995 * 109.46900 * 303.83040 * 21 20 19 40 40 H 1.08999 * 109.47358 * 59.99140 * 22 20 19 41 41 H 1.09004 * 109.47438 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46620 * 299.99634 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.1483 -2.2858 3.6038 10 1 3.1473 -0.1859 4.8161 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6926 -1.1995 13 6 1.4901 -2.0604 -1.2704 14 6 1.9007 -2.6995 -2.5990 15 6 3.4283 -2.7177 -2.7004 16 6 3.9587 -1.2867 -2.5761 17 6 3.4874 -0.6882 -1.2473 18 1 3.8794 -1.2827 -0.4222 19 6 3.9970 0.7494 -1.1269 20 7 3.7292 1.2520 0.2272 21 6 4.6885 0.6999 1.1930 22 6 3.7400 2.7207 0.2553 23 1 -0.3632 0.6170 0.8218 24 1 -0.3633 0.4032 -0.9453 25 1 -0.3633 -1.0202 0.1235 26 1 0.7083 1.1609 3.4844 27 1 0.4026 -2.0329 -1.2013 28 1 1.8918 -2.6484 -0.4451 29 1 1.4880 -2.1197 -3.4246 30 1 1.5207 -3.7201 -2.6446 31 1 3.8396 -3.3296 -1.8975 32 1 3.7245 -3.1336 -3.6635 33 1 5.0483 -1.2985 -2.6056 34 1 3.5784 -0.6847 -3.4015 35 1 5.0701 0.7716 -1.3170 36 1 3.4859 1.3784 -1.8557 37 1 5.6925 1.0449 0.9457 38 1 4.4265 1.0341 2.1969 39 1 4.6584 -0.3889 1.1531 40 1 2.9722 3.1026 -0.4176 41 1 3.5396 3.0662 1.2695 42 1 4.7169 3.0830 -0.0652 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000405191891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:30 Heat of formation + Delta-G solvation = 8.900781 kcal Electronic energy + Delta-G solvation = -19680.933955 eV Core-core repulsion = 17081.931758 eV Total energy + Delta-G solvation = -2599.002197 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45535 -37.49876 -35.73384 -33.39108 -32.36580 -29.85334 -28.38163 -27.47012 -26.83810 -24.96499 -23.26029 -21.54410 -21.33946 -20.37638 -17.82034 -17.00288 -16.56686 -16.11850 -15.92329 -15.34615 -15.13292 -14.84195 -14.42540 -14.30559 -13.84337 -13.66513 -13.16961 -13.07221 -12.82970 -12.80008 -12.58858 -12.44003 -12.36061 -12.23156 -12.01917 -11.90914 -11.75967 -11.59861 -11.41180 -11.06208 -10.80276 -10.63637 -10.17571 -8.66204 -8.37643 -7.73273 -5.80101 1.35268 1.42325 1.46577 2.56065 3.32560 3.50454 3.59292 4.11667 4.17734 4.26648 4.39410 4.44778 4.57735 4.63439 4.65764 4.75693 4.82287 4.87326 4.90974 5.01124 5.06719 5.16528 5.17927 5.18539 5.20320 5.24485 5.28216 5.36225 5.42827 5.47683 5.56931 5.68299 5.85065 6.08209 6.42078 6.52168 6.52862 6.63252 6.71895 7.06034 7.37432 7.81038 9.25369 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.011500 C = 0.009686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.419692 B = 2434.229902 C = 2890.136714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.200 3.800 3 H 0.087 0.913 4 C -0.472 4.472 5 H 0.025 0.975 6 C 0.039 3.961 7 N -0.909 5.909 8 Si 0.903 3.097 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.296 1.296 12 N -0.528 5.528 13 C 0.061 3.939 14 C -0.110 4.110 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.097 3.903 18 H 0.014 0.986 19 C 0.070 3.930 20 N -0.520 5.520 21 C 0.058 3.942 22 C 0.039 3.961 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.010 0.990 26 H 0.247 0.753 27 H 0.053 0.947 28 H 0.002 0.998 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.039 0.961 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.822 -1.548 -9.567 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.093 3.907 3 H 0.104 0.896 4 C -0.512 4.512 5 H 0.043 0.957 6 C -0.159 4.159 7 N -0.551 5.551 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.223 1.223 12 N -0.253 5.253 13 C -0.068 4.068 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.144 4.144 17 C -0.013 4.013 18 H 0.032 0.968 19 C -0.058 4.058 20 N -0.243 5.243 21 C -0.090 4.090 22 C -0.109 4.109 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.120 -1.327 -9.696 11.543 hybrid contribution 1.028 -0.740 2.235 2.569 sum 7.149 -2.067 -7.461 10.538 Atomic orbital electron populations 1.21777 1.00245 0.98050 0.98065 1.19727 0.89492 0.97564 0.83938 0.89586 1.21441 1.27966 1.09385 0.92434 0.95682 1.25039 0.96211 0.95379 0.99238 1.69985 1.39029 1.24162 1.21908 0.86396 0.77906 0.79106 0.83301 1.20526 1.21342 1.22286 1.62516 1.07149 1.14617 1.41018 1.21898 0.98814 0.90291 0.95804 1.21576 0.96340 0.99914 0.96915 1.21507 0.95377 0.96520 1.01624 1.21619 0.99943 0.96212 0.96656 1.21465 0.89059 0.94985 0.95749 0.96766 1.22093 0.97710 0.96002 0.89965 1.62216 1.49458 1.06838 1.05744 1.22036 0.91570 0.99738 0.95681 1.22209 0.99406 0.87902 1.01388 0.92919 0.96217 0.97045 0.94306 0.92886 0.97956 0.91319 0.91371 0.93713 0.90013 0.90964 0.91026 0.93965 0.90927 0.95972 0.94255 0.93127 0.92001 0.93333 0.95236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.09 8.31 71.98 0.60 -5.49 16 2 C 0.20 9.60 1.83 44.17 0.08 9.68 16 3 H 0.09 4.40 4.80 -2.39 -0.01 4.39 16 4 C -0.47 -24.53 4.34 25.60 0.11 -24.42 16 5 H 0.02 1.37 5.74 -2.91 -0.02 1.36 16 6 C 0.04 2.09 5.30 84.65 0.45 2.54 16 7 N -0.91 -51.10 11.40 21.45 0.24 -50.85 16 8 Si 0.90 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 12 N -0.53 -21.71 4.51 -850.12 -3.83 -25.54 16 13 C 0.06 2.38 4.79 86.33 0.41 2.79 16 14 C -0.11 -3.25 6.09 30.64 0.19 -3.06 16 15 C -0.11 -3.00 6.00 30.67 0.18 -2.82 16 16 C -0.11 -2.97 5.38 30.69 0.16 -2.80 16 17 C 0.10 3.52 1.77 44.98 0.08 3.60 16 18 H 0.01 0.61 5.29 -2.39 -0.01 0.60 16 19 C 0.07 2.40 4.21 86.30 0.36 2.76 16 20 N -0.52 -20.27 1.13 -948.86 -1.07 -21.34 16 21 C 0.06 2.24 8.18 127.69 1.04 3.28 16 22 C 0.04 1.35 9.09 127.69 1.16 2.51 16 23 H 0.05 2.86 6.29 -2.39 -0.02 2.85 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.01 0.53 6.63 -2.39 -0.02 0.52 16 26 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 27 H 0.05 2.19 6.08 -2.39 -0.01 2.17 16 28 H 0.00 0.10 6.84 -2.38 -0.02 0.08 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.04 1.26 7.97 -2.39 -0.02 1.24 16 36 H 0.07 2.43 7.87 -2.39 -0.02 2.41 16 37 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.05 2.10 6.00 -2.39 -0.01 2.08 16 40 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -57.41 302.63 3.16 -54.25 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.96 Total: 8.87 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 4.84 Total: -11.44 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -4.66 Total: -97.73 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -57.41 3.16 -54.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000405191891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.148 kcal (2) G-P(sol) polarization free energy of solvation -57.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds