Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47235 * 2 1 4 4 C 1.50706 * 109.47304 * 120.00364 * 2 1 3 5 5 H 1.07998 * 120.00168 * 119.99387 * 4 2 1 6 6 C 1.37880 * 119.99248 * 299.99690 * 4 2 1 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46966 * 59.99815 * 8 6 4 10 10 H 1.48494 * 109.47295 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.47379 * 300.00094 * 8 6 4 12 12 N 1.46898 * 109.46948 * 239.99685 * 2 1 3 13 13 C 1.46901 * 111.00443 * 306.04832 * 12 2 1 14 14 C 1.46906 * 110.99820 * 70.00145 * 12 2 1 15 15 C 1.52996 * 109.47022 * 169.99926 * 14 12 2 16 16 H 1.08996 * 109.50839 * 55.07852 * 15 14 12 17 17 C 1.53120 * 109.50135 * 175.19713 * 15 14 12 18 18 C 1.53123 * 109.16150 * 177.59288 * 17 15 14 19 19 C 1.53039 * 109.27941 * 302.34864 * 18 17 15 20 20 N 1.46841 * 109.52356 * 59.17538 * 19 18 17 21 21 C 1.46904 * 110.99927 * 174.16307 * 20 19 18 22 22 C 1.46849 * 111.20029 * 298.25776 * 20 19 18 23 23 H 1.09002 * 109.47146 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46628 * 299.99980 * 1 2 3 25 25 H 1.08991 * 109.47344 * 60.00022 * 1 2 3 26 26 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47401 * 183.95136 * 13 12 2 28 28 H 1.09001 * 109.46874 * 63.95149 * 13 12 2 29 29 H 1.09004 * 109.46970 * 303.95282 * 13 12 2 30 30 H 1.08997 * 109.46995 * 289.99871 * 14 12 2 31 31 H 1.09001 * 109.46848 * 49.99877 * 14 12 2 32 32 H 1.08996 * 109.52681 * 297.49820 * 17 15 14 33 33 H 1.09005 * 109.52584 * 57.69202 * 17 15 14 34 34 H 1.09003 * 109.50488 * 182.40037 * 18 17 15 35 35 H 1.08999 * 109.53098 * 62.30554 * 18 17 15 36 36 H 1.09004 * 109.45765 * 299.16060 * 19 18 17 37 37 H 1.08996 * 109.45010 * 179.18878 * 19 18 17 38 38 H 1.08995 * 109.47018 * 184.21289 * 21 20 19 39 39 H 1.08999 * 109.46927 * 304.20907 * 21 20 19 40 40 H 1.08997 * 109.47316 * 64.20891 * 21 20 19 41 41 H 1.08993 * 109.46030 * 301.72638 * 22 20 19 42 42 H 1.09006 * 109.45318 * 181.75287 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1195 4.0079 9 1 3.8077 -1.1190 4.0076 10 1 1.8281 -0.4193 5.2204 11 1 1.8281 -2.5199 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4884 -0.5257 -3.5972 16 1 2.2040 -1.5736 -3.6926 17 6 2.1161 0.2245 -4.8791 18 6 2.9018 -0.3661 -6.0532 19 6 4.4004 -0.2697 -5.7579 20 7 4.7054 -1.0034 -4.5231 21 6 6.1538 -1.0494 -4.2822 22 6 3.9989 -0.4246 -3.3732 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.7089 1.1612 3.4844 27 1 1.8663 -2.5522 -2.1648 28 1 0.3555 -1.9520 -1.4399 29 1 1.6466 -2.5988 -0.3991 30 1 0.6814 0.1052 -2.6087 31 1 2.1025 1.1188 -2.2603 32 1 1.0475 0.1186 -5.0660 33 1 2.3647 1.2800 -4.7688 34 1 2.6732 0.1916 -6.9614 35 1 2.6242 -1.4114 -6.1885 36 1 4.6800 0.7769 -5.6371 37 1 4.9620 -0.7025 -6.5857 38 1 6.3567 -1.6612 -3.4033 39 1 6.6527 -1.4823 -5.1493 40 1 6.5267 -0.0389 -4.1154 41 1 4.2805 0.6226 -3.2635 42 1 4.2692 -0.9700 -2.4689 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687804445.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -1.334599 kcal Electronic energy + Delta-G solvation = -18353.342107 eV Core-core repulsion = 15753.896071 eV Total energy + Delta-G solvation = -2599.446036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10446 -36.95836 -33.78452 -32.59727 -31.03571 -28.35188 -26.69336 -26.23626 -25.16564 -23.83125 -22.58889 -21.08589 -19.41139 -18.95111 -16.13430 -15.63580 -15.16759 -14.99468 -14.43919 -14.32537 -14.28196 -13.44911 -13.35633 -12.87474 -12.60441 -12.48609 -12.07559 -11.95012 -11.64381 -11.41777 -11.14880 -11.01878 -10.85057 -10.72580 -10.67991 -10.52119 -10.29737 -10.06715 -10.01340 -9.95479 -9.58174 -8.83784 -8.34246 -8.17155 -7.05820 -5.96820 -4.00144 3.35107 3.39157 3.42326 4.09000 4.44393 4.84381 4.98457 5.02814 5.26566 5.32781 5.35789 5.45121 5.53029 5.64051 5.67563 5.78279 5.90000 5.94542 5.99947 6.04636 6.10573 6.20182 6.25353 6.28409 6.38052 6.49828 6.64774 6.70892 6.74598 6.88178 6.97235 7.18064 7.25630 7.28520 7.53401 7.76319 7.89287 8.20094 8.44626 8.66475 9.06038 9.64687 11.10267 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.033487 B = 0.005730 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.940849 B = 4885.068058 C = 5372.939085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.210 3.790 3 H 0.036 0.964 4 C -0.496 4.496 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.060 3.940 15 C -0.079 4.079 16 H 0.077 0.923 17 C -0.117 4.117 18 C -0.114 4.114 19 C 0.055 3.945 20 N -0.547 5.547 21 C 0.027 3.973 22 C 0.071 3.929 23 H 0.031 0.969 24 H 0.086 0.914 25 H 0.005 0.995 26 H 0.260 0.740 27 H 0.045 0.955 28 H 0.014 0.986 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -1.774 -14.598 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.069 4.069 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.156 4.156 18 C -0.152 4.152 19 C -0.073 4.073 20 N -0.271 5.271 21 C -0.121 4.121 22 C -0.056 4.056 23 H 0.050 0.950 24 H 0.105 0.895 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.045 0.955 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.592 -2.183 -14.450 15.318 hybrid contribution -0.363 0.589 0.927 1.157 sum 4.228 -1.594 -13.523 14.258 Atomic orbital electron populations 1.22391 1.00959 0.99341 1.00326 1.19294 0.89687 0.94370 0.86227 0.94616 1.21085 1.30362 1.12378 0.89668 0.92041 1.24929 0.95306 0.95164 0.98966 1.69877 1.37171 1.23147 1.23391 0.86597 0.79195 0.79610 0.82179 1.20293 1.21471 1.20396 1.62312 1.58671 1.02414 1.02208 1.22253 0.96012 0.92090 1.01132 1.22047 0.96758 0.97442 0.90664 1.21205 0.94650 1.00416 0.93519 0.90499 1.21634 0.99591 0.99476 0.94858 1.21554 0.94341 1.01636 0.97659 1.22068 0.96716 0.95827 0.92677 1.61948 1.07888 1.53793 1.03477 1.22309 0.87962 0.99878 1.01955 1.22065 0.93360 0.97315 0.92894 0.95041 0.89498 0.97580 0.93042 0.93609 0.96738 0.91101 0.95625 0.91933 0.92077 0.92430 0.92012 0.91303 0.95343 0.91433 0.91169 0.91989 0.96001 0.95492 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.22 37.16 0.31 -3.88 16 2 C 0.21 5.31 2.31 -68.86 -0.16 5.15 16 3 H 0.04 0.99 7.93 -51.93 -0.41 0.58 16 4 C -0.50 -13.61 7.91 -34.44 -0.27 -13.88 16 5 H 0.06 1.69 7.12 -52.49 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.35 4.17 -236.28 -0.99 -12.34 16 13 C 0.03 0.67 8.46 60.07 0.51 1.18 16 14 C 0.06 1.10 3.92 -3.82 -0.01 1.08 16 15 C -0.08 -1.21 2.27 -90.54 -0.21 -1.41 16 16 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 17 C -0.12 -1.51 5.29 -26.61 -0.14 -1.65 16 18 C -0.11 -1.28 6.09 -26.65 -0.16 -1.45 16 19 C 0.06 0.65 5.46 -3.84 -0.02 0.63 16 20 N -0.55 -7.47 4.91 -242.96 -1.19 -8.66 16 21 C 0.03 0.32 9.59 60.07 0.58 0.90 16 22 C 0.07 1.10 4.62 -3.83 -0.02 1.08 16 23 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 24 H 0.09 2.35 6.07 -51.92 -0.32 2.03 16 25 H 0.01 0.12 6.91 -51.93 -0.36 -0.24 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 28 H 0.01 0.28 6.46 -51.93 -0.34 -0.05 16 29 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 30 H 0.03 0.47 7.06 -51.93 -0.37 0.11 16 31 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.20 16 40 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 1.63 7.76 -51.93 -0.40 1.23 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -27.97 313.46 -9.23 -37.19 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -7.68 Total: -1.56 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 0.30 Total: -10.76 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -1.55 Total: -46.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.97 -9.23 -37.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804445.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.860 kcal (2) G-P(sol) polarization free energy of solvation -27.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds