Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47813 * 2 1 4 4 C 1.50701 * 109.46969 * 239.99881 * 2 1 3 5 5 H 1.08001 * 120.00008 * 240.00179 * 4 2 1 6 6 C 1.37876 * 120.00102 * 60.00441 * 4 2 1 7 7 N 1.31518 * 119.99952 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00249 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47183 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47357 * 119.99984 * 8 6 4 11 11 H 1.48507 * 109.47176 * 239.99983 * 8 6 4 12 12 N 1.46906 * 109.47014 * 120.00243 * 2 1 3 13 13 C 1.46899 * 110.99989 * 176.04136 * 12 2 1 14 14 C 1.46895 * 111.00084 * 299.99946 * 12 2 1 15 15 C 1.52998 * 109.47463 * 164.49210 * 14 12 2 16 16 H 1.09001 * 109.49953 * 55.89569 * 15 14 12 17 17 C 1.53119 * 109.50406 * 295.77992 * 15 14 12 18 18 C 1.53109 * 109.16326 * 182.40283 * 17 15 14 19 19 C 1.53046 * 109.27799 * 57.65054 * 18 17 15 20 20 N 1.46845 * 109.52470 * 300.82608 * 19 18 17 21 21 C 1.46895 * 110.99917 * 185.83849 * 20 19 18 22 22 C 1.46847 * 111.20036 * 61.73729 * 20 19 18 23 23 H 1.08998 * 109.47275 * 300.00311 * 1 2 3 24 24 H 1.09003 * 109.46761 * 59.99401 * 1 2 3 25 25 H 1.08996 * 109.47813 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00452 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46887 * 187.59757 * 13 12 2 28 28 H 1.09003 * 109.47056 * 307.59756 * 13 12 2 29 29 H 1.09001 * 109.46866 * 67.59862 * 13 12 2 30 30 H 1.09001 * 109.47232 * 44.49070 * 14 12 2 31 31 H 1.09002 * 109.47080 * 284.49702 * 14 12 2 32 32 H 1.09003 * 109.51787 * 302.30607 * 17 15 14 33 33 H 1.08999 * 109.51921 * 62.42932 * 17 15 14 34 34 H 1.08996 * 109.50572 * 177.59163 * 18 17 15 35 35 H 1.08995 * 109.50315 * 297.67469 * 18 17 15 36 36 H 1.09004 * 109.46089 * 60.83843 * 19 18 17 37 37 H 1.08997 * 109.46256 * 180.81656 * 19 18 17 38 38 H 1.08993 * 109.47444 * 295.78874 * 21 20 19 39 39 H 1.09002 * 109.47297 * 55.78809 * 21 20 19 40 40 H 1.08999 * 109.46968 * 175.78722 * 21 20 19 41 41 H 1.09000 * 109.46270 * 178.24210 * 22 20 19 42 42 H 1.08996 * 109.45815 * 58.27604 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1482 -2.2856 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7947 1.1870 14 6 1.5486 -0.0265 2.4211 15 6 1.7375 -0.9617 3.6171 16 1 2.7821 -1.2669 3.6790 17 6 0.8521 -2.1989 3.4436 18 6 1.0016 -3.1003 4.6722 19 6 0.6265 -2.3095 5.9277 20 7 1.5022 -1.1370 6.0491 21 6 1.2635 -0.4305 7.3146 22 6 1.3411 -0.2330 4.9031 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7088 1.1614 -3.4844 27 1 3.8122 -1.4262 2.0131 28 1 3.8107 -1.2329 0.2436 29 1 3.9194 0.1991 1.2952 30 1 0.4921 0.2202 2.3161 31 1 2.1210 0.8873 2.5804 32 1 -0.1885 -1.8907 3.3424 33 1 1.1590 -2.7441 2.5510 34 1 0.3412 -3.9618 4.5739 35 1 2.0342 -3.4403 4.7506 36 1 -0.4106 -1.9822 5.8543 37 1 0.7458 -2.9442 6.8057 38 1 0.2486 -0.0331 7.3231 39 1 1.3893 -1.1231 8.1468 40 1 1.9754 0.3890 7.4131 41 1 1.9792 0.6405 5.0371 42 1 0.3006 0.0846 4.8346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687804446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -0.023420 kcal Electronic energy + Delta-G solvation = -18300.947988 eV Core-core repulsion = 15701.558809 eV Total energy + Delta-G solvation = -2599.389179 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.10857 -36.85272 -33.69498 -32.50599 -31.11525 -29.03526 -26.82364 -26.37173 -24.57659 -23.45775 -22.69241 -21.10678 -19.46235 -19.04096 -16.26940 -15.70971 -15.32600 -14.85817 -14.45503 -14.29441 -14.18012 -13.54803 -13.20504 -13.16179 -12.65134 -12.33504 -12.20291 -12.01774 -11.65840 -11.54326 -11.20639 -11.02881 -10.89547 -10.67475 -10.59049 -10.18695 -10.15462 -10.01315 -9.97513 -9.92038 -9.58139 -8.80365 -8.39452 -8.31381 -7.08341 -5.98677 -4.02702 3.31061 3.38945 3.43434 3.93872 4.43288 4.90237 4.97482 5.12982 5.15156 5.30492 5.34814 5.42046 5.48444 5.60858 5.68874 5.72835 5.76214 5.90755 5.96825 5.99613 6.14723 6.28783 6.29423 6.39222 6.42666 6.53168 6.76369 6.81248 6.87000 6.92219 7.08835 7.11285 7.12838 7.21851 7.57677 7.78466 7.86292 8.26415 8.37534 8.66401 9.04673 9.62267 11.08267 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046030 B = 0.005127 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.146473 B = 5459.998628 C = 5567.857683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.211 3.789 3 H -0.004 1.004 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.533 5.533 13 C 0.035 3.965 14 C 0.055 3.945 15 C -0.076 4.076 16 H 0.074 0.926 17 C -0.105 4.105 18 C -0.118 4.118 19 C 0.056 3.944 20 N -0.544 5.544 21 C 0.026 3.974 22 C 0.061 3.939 23 H 0.007 0.993 24 H 0.084 0.916 25 H 0.034 0.966 26 H 0.259 0.741 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.007 0.993 30 H 0.072 0.928 31 H 0.019 0.981 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.281 -3.379 15.347 15.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.105 3.895 3 H 0.013 0.987 4 C -0.539 4.539 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.257 5.257 13 C -0.113 4.113 14 C -0.075 4.075 15 C -0.095 4.095 16 H 0.093 0.907 17 C -0.142 4.142 18 C -0.156 4.156 19 C -0.071 4.071 20 N -0.268 5.268 21 C -0.123 4.123 22 C -0.067 4.067 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.074 -3.904 15.192 15.686 hybrid contribution -0.259 0.828 -0.813 1.189 sum -0.334 -3.075 14.379 14.708 Atomic orbital electron populations 1.21848 0.97857 0.99559 0.99702 1.19228 0.92225 0.91955 0.86087 0.98674 1.21211 1.30759 1.12178 0.89776 0.91777 1.24937 0.95265 0.95097 0.99022 1.69906 1.37103 1.23147 1.23219 0.86481 0.78579 0.79618 0.82971 1.19737 1.21077 1.21209 1.62046 1.09097 1.52568 1.02024 1.22262 0.88942 0.98385 1.01737 1.22135 1.00722 0.93986 0.90608 1.21141 1.00535 0.95650 0.92191 0.90731 1.21478 0.99093 0.95955 0.97707 1.21628 1.01889 0.97773 0.94298 1.22104 0.93942 0.92266 0.98829 1.61896 1.54295 1.08479 1.02149 1.22333 0.99324 0.98712 0.91886 1.22138 0.99245 0.94918 0.90411 0.97374 0.89786 0.94721 0.93115 0.93739 0.90463 0.97442 0.90967 0.96299 0.92938 0.89991 0.91938 0.91438 0.95221 0.91403 0.95966 0.91685 0.91524 0.91213 0.95066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.79 37.16 0.33 -2.91 16 2 C 0.21 5.37 2.06 -68.86 -0.14 5.22 16 3 H 0.00 -0.12 8.14 -51.93 -0.42 -0.54 16 4 C -0.50 -13.72 7.83 -34.44 -0.27 -13.99 16 5 H 0.06 1.75 6.43 -52.49 -0.34 1.42 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.53 -11.46 4.05 -236.28 -0.96 -12.42 16 13 C 0.04 0.71 9.13 60.06 0.55 1.26 16 14 C 0.05 1.01 4.23 -3.83 -0.02 0.99 16 15 C -0.08 -1.18 2.35 -90.54 -0.21 -1.39 16 16 H 0.07 1.22 6.67 -51.93 -0.35 0.87 16 17 C -0.10 -1.58 5.13 -26.61 -0.14 -1.72 16 18 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 19 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 20 N -0.54 -6.86 4.91 -242.97 -1.19 -8.05 16 21 C 0.03 0.26 9.59 60.06 0.58 0.84 16 22 C 0.06 0.83 4.75 -3.84 -0.02 0.82 16 23 H 0.01 0.17 6.10 -51.93 -0.32 -0.15 16 24 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 25 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.04 0.78 6.75 -51.93 -0.35 0.43 16 28 H 0.08 1.66 5.99 -51.93 -0.31 1.35 16 29 H 0.01 0.14 8.05 -51.93 -0.42 -0.28 16 30 H 0.07 1.37 5.64 -51.93 -0.29 1.08 16 31 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.40 7.80 -51.93 -0.41 1.00 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -28.21 315.24 -9.13 -37.33 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.71 Total: -2.59 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 0.38 Total: -10.38 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: -1.52 Total: -45.48 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.21 -9.13 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.308 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds