Wall clock time and date at job start Mon Mar 30 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47813 * 2 1 4 4 C 1.50701 * 109.46969 * 239.99881 * 2 1 3 5 5 H 1.08001 * 120.00008 * 240.00179 * 4 2 1 6 6 C 1.37876 * 120.00102 * 60.00441 * 4 2 1 7 7 N 1.31518 * 119.99952 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00249 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47183 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47357 * 119.99984 * 8 6 4 11 11 H 1.48507 * 109.47176 * 239.99983 * 8 6 4 12 12 N 1.46906 * 109.47014 * 120.00243 * 2 1 3 13 13 C 1.46899 * 110.99989 * 176.04136 * 12 2 1 14 14 C 1.46895 * 111.00084 * 299.99946 * 12 2 1 15 15 C 1.52998 * 109.47463 * 164.49210 * 14 12 2 16 16 H 1.09001 * 109.49953 * 55.89569 * 15 14 12 17 17 C 1.53119 * 109.50406 * 295.77992 * 15 14 12 18 18 C 1.53109 * 109.16326 * 182.40283 * 17 15 14 19 19 C 1.53046 * 109.27799 * 57.65054 * 18 17 15 20 20 N 1.46845 * 109.52470 * 300.82608 * 19 18 17 21 21 C 1.46895 * 110.99917 * 185.83849 * 20 19 18 22 22 C 1.46847 * 111.20036 * 61.73729 * 20 19 18 23 23 H 1.08998 * 109.47275 * 300.00311 * 1 2 3 24 24 H 1.09003 * 109.46761 * 59.99401 * 1 2 3 25 25 H 1.08996 * 109.47813 * 180.02562 * 1 2 3 26 26 H 0.96997 * 120.00452 * 179.97438 * 7 6 4 27 27 H 1.09004 * 109.46887 * 187.59757 * 13 12 2 28 28 H 1.09003 * 109.47056 * 307.59756 * 13 12 2 29 29 H 1.09001 * 109.46866 * 67.59862 * 13 12 2 30 30 H 1.09001 * 109.47232 * 44.49070 * 14 12 2 31 31 H 1.09002 * 109.47080 * 284.49702 * 14 12 2 32 32 H 1.09003 * 109.51787 * 302.30607 * 17 15 14 33 33 H 1.08999 * 109.51921 * 62.42932 * 17 15 14 34 34 H 1.08996 * 109.50572 * 177.59163 * 18 17 15 35 35 H 1.08995 * 109.50315 * 297.67469 * 18 17 15 36 36 H 1.09004 * 109.46089 * 60.83843 * 19 18 17 37 37 H 1.08997 * 109.46256 * 180.81656 * 19 18 17 38 38 H 1.08993 * 109.47444 * 295.78874 * 21 20 19 39 39 H 1.09002 * 109.47297 * 55.78809 * 21 20 19 40 40 H 1.08999 * 109.46968 * 175.78722 * 21 20 19 41 41 H 1.09000 * 109.46270 * 178.24210 * 22 20 19 42 42 H 1.08996 * 109.45815 * 58.27604 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0079 9 1 3.1482 -2.2856 -3.6038 10 1 1.1677 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 7 2.0196 -0.6926 1.1995 13 6 3.4850 -0.7947 1.1870 14 6 1.5486 -0.0265 2.4211 15 6 1.7375 -0.9617 3.6171 16 1 2.7821 -1.2669 3.6790 17 6 0.8521 -2.1989 3.4436 18 6 1.0016 -3.1003 4.6722 19 6 0.6265 -2.3095 5.9277 20 7 1.5022 -1.1370 6.0491 21 6 1.2635 -0.4305 7.3146 22 6 1.3411 -0.2330 4.9031 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 0.7088 1.1614 -3.4844 27 1 3.8122 -1.4262 2.0131 28 1 3.8107 -1.2329 0.2436 29 1 3.9194 0.1991 1.2952 30 1 0.4921 0.2202 2.3161 31 1 2.1210 0.8873 2.5804 32 1 -0.1885 -1.8907 3.3424 33 1 1.1590 -2.7441 2.5510 34 1 0.3412 -3.9618 4.5739 35 1 2.0342 -3.4403 4.7506 36 1 -0.4106 -1.9822 5.8543 37 1 0.7458 -2.9442 6.8057 38 1 0.2486 -0.0331 7.3231 39 1 1.3893 -1.1231 8.1468 40 1 1.9754 0.3890 7.4131 41 1 1.9792 0.6405 5.0371 42 1 0.3006 0.0846 4.8346 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687804446.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:29 Heat of formation + Delta-G solvation = -17.741922 kcal Electronic energy + Delta-G solvation = -18301.716320 eV Core-core repulsion = 15701.558809 eV Total energy + Delta-G solvation = -2600.157511 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28642 -38.46205 -35.26780 -34.04746 -32.41440 -30.93179 -28.30727 -27.48995 -26.45261 -25.06406 -23.72078 -22.51931 -20.97411 -20.46974 -18.34495 -17.16770 -16.57687 -16.24981 -15.87252 -15.60599 -15.48115 -15.06525 -14.82381 -14.51062 -14.08318 -13.74957 -13.64246 -13.10925 -13.03729 -12.95426 -12.71306 -12.63336 -12.62023 -12.36789 -12.08328 -11.96612 -11.91287 -11.73767 -11.32654 -11.19681 -11.05171 -10.79901 -10.49948 -9.26105 -8.87653 -8.10425 -6.21848 1.41707 1.43612 1.55451 2.43074 2.95956 3.18038 3.45544 3.88499 3.99045 4.04866 4.26653 4.41224 4.47940 4.54795 4.58362 4.62476 4.65874 4.69894 4.74990 4.77652 4.88467 4.94276 4.97761 5.03007 5.04991 5.09520 5.11377 5.19803 5.25435 5.33155 5.50857 5.56055 5.60090 5.74820 5.81317 6.13173 6.20209 6.27325 6.43095 6.78205 6.93954 7.47412 8.95989 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046030 B = 0.005127 C = 0.005028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.146473 B = 5459.998628 C = 5567.857683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.215 3.785 3 H -0.042 1.042 4 C -0.516 4.516 5 H 0.061 0.939 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.536 5.536 13 C 0.040 3.960 14 C 0.058 3.942 15 C -0.065 4.065 16 H 0.069 0.931 17 C -0.102 4.102 18 C -0.112 4.112 19 C 0.057 3.943 20 N -0.555 5.555 21 C 0.025 3.975 22 C 0.067 3.933 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.261 0.739 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.004 0.996 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.045 0.955 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 -4.428 16.780 17.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.108 3.892 3 H -0.024 1.024 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.260 5.260 13 C -0.108 4.108 14 C -0.071 4.071 15 C -0.085 4.085 16 H 0.088 0.912 17 C -0.140 4.140 18 C -0.150 4.150 19 C -0.071 4.071 20 N -0.279 5.279 21 C -0.122 4.122 22 C -0.061 4.061 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.023 0.977 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.106 0.894 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.165 -4.960 16.651 17.375 hybrid contribution -0.328 1.176 -1.203 1.714 sum -0.162 -3.783 15.448 15.905 Atomic orbital electron populations 1.21649 0.97373 0.99167 0.99471 1.19040 0.92596 0.90039 0.87516 1.02437 1.21472 1.30879 1.12199 0.90895 0.92116 1.25721 0.95408 0.95773 1.01942 1.70033 1.37946 1.24323 1.23926 0.85469 0.78098 0.78610 0.79227 1.19080 1.20639 1.20795 1.62012 1.09993 1.52169 1.01822 1.22231 0.88045 0.98621 1.01939 1.22172 0.99932 0.94569 0.90441 1.21009 1.00346 0.95288 0.91830 0.91237 1.21413 0.98397 0.95992 0.98182 1.21577 1.02202 0.97788 0.93400 1.22141 0.93724 0.92151 0.99062 1.61900 1.54791 1.08686 1.02531 1.22398 0.99664 0.99153 0.91030 1.21999 0.99101 0.95005 0.90016 0.95295 0.92296 0.94984 0.93010 0.90941 0.92181 0.97714 0.91733 0.96546 0.93573 0.92317 0.90472 0.91634 0.95243 0.89353 0.95653 0.90077 0.91044 0.90835 0.95296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.79 71.98 0.63 -5.29 16 2 C 0.22 11.19 2.06 44.17 0.09 11.28 16 3 H -0.04 -2.45 8.14 -2.39 -0.02 -2.47 16 4 C -0.52 -28.71 7.83 25.60 0.20 -28.51 16 5 H 0.06 3.35 6.43 -2.91 -0.02 3.34 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.54 -23.20 4.05 -901.47 -3.65 -26.85 16 13 C 0.04 1.60 9.13 127.69 1.17 2.77 16 14 C 0.06 2.11 4.23 86.30 0.37 2.47 16 15 C -0.07 -1.96 2.35 -10.74 -0.03 -1.98 16 16 H 0.07 2.16 6.67 -2.39 -0.02 2.15 16 17 C -0.10 -2.97 5.13 30.67 0.16 -2.82 16 18 C -0.11 -2.57 6.09 30.65 0.19 -2.38 16 19 C 0.06 1.18 5.46 86.33 0.47 1.65 16 20 N -0.55 -12.55 4.91 -922.61 -4.53 -17.08 16 21 C 0.03 0.44 9.59 127.69 1.22 1.67 16 22 C 0.07 1.72 4.75 86.32 0.41 2.13 16 23 H 0.03 1.28 6.10 -2.39 -0.01 1.26 16 24 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.07 2.47 6.75 -2.38 -0.02 2.46 16 28 H 0.06 2.60 5.99 -2.39 -0.01 2.58 16 29 H 0.00 0.18 8.05 -2.39 -0.02 0.16 16 30 H 0.06 2.45 5.64 -2.39 -0.01 2.43 16 31 H 0.02 0.61 7.99 -2.39 -0.02 0.59 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 38 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.82 8.12 -2.39 -0.02 1.80 16 42 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -60.22 315.24 0.37 -59.85 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.95 Total: 9.52 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 5.33 Total: -18.02 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -7.94 Total: -97.43 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.22 0.37 -59.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687804446.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.107 kcal (2) G-P(sol) polarization free energy of solvation -60.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds