Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.50696 * 109.46905 * 239.99783 * 2 1 3 5 5 H 1.07998 * 120.00307 * 240.00237 * 4 2 1 6 6 C 1.37875 * 120.00105 * 60.00501 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00202 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99835 * 8 6 4 10 10 H 1.48500 * 109.47167 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46943 * 299.99908 * 8 6 4 12 12 N 1.46907 * 109.47101 * 119.99930 * 2 1 3 13 13 C 1.46897 * 111.00071 * 274.99992 * 12 2 1 14 14 C 1.52991 * 109.47198 * 196.26075 * 13 12 2 15 15 H 1.09000 * 112.95930 * 55.47444 * 14 13 12 16 16 C 1.53937 * 113.76050 * 187.12356 * 14 13 12 17 17 C 1.53940 * 86.34266 * 138.03569 * 16 14 13 18 18 N 1.47956 * 86.17813 * 336.28059 * 17 16 14 19 19 C 1.46896 * 111.00181 * 137.58562 * 18 17 16 20 20 C 1.53008 * 109.47045 * 316.98143 * 19 18 17 21 21 C 1.53000 * 109.47274 * 76.98020 * 19 18 17 22 22 C 1.53000 * 109.47384 * 196.97917 * 19 18 17 23 23 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46971 * 300.00490 * 1 2 3 25 25 H 1.08997 * 109.47128 * 59.99580 * 1 2 3 26 26 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99532 * 38.94936 * 12 2 1 28 28 H 1.09001 * 109.46954 * 316.25947 * 13 12 2 29 29 H 1.08999 * 109.47365 * 76.25464 * 13 12 2 30 30 H 1.09002 * 113.73368 * 252.39186 * 16 14 13 31 31 H 1.08999 * 113.73200 * 23.67584 * 16 14 13 32 32 H 1.08998 * 113.75584 * 90.59441 * 17 16 14 33 33 H 1.09001 * 113.75617 * 221.84931 * 17 16 14 34 34 H 1.08988 * 109.47164 * 87.98422 * 20 19 18 35 35 H 1.08995 * 109.46950 * 207.99034 * 20 19 18 36 36 H 1.09003 * 109.46653 * 327.98510 * 20 19 18 37 37 H 1.09000 * 109.47316 * 60.00220 * 21 19 18 38 38 H 1.09005 * 109.47148 * 180.02562 * 21 19 18 39 39 H 1.09008 * 109.46905 * 299.99794 * 21 19 18 40 40 H 1.09002 * 109.47019 * 52.09062 * 22 19 18 41 41 H 1.08999 * 109.47499 * 172.08737 * 22 19 18 42 42 H 1.09001 * 109.47288 * 292.08936 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.9553 -0.3925 3.4426 15 1 3.9535 -0.6562 3.0931 16 6 2.9497 0.4036 4.7601 17 6 2.8620 -0.9600 5.4690 18 7 2.2846 -1.4686 4.2052 19 6 2.8432 -2.7833 3.8628 20 6 4.3534 -2.7756 4.1085 21 6 2.1901 -3.8577 4.7347 22 6 2.5679 -3.0862 2.3885 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1613 -3.4843 27 1 1.4495 -1.4979 1.4101 28 1 2.5125 1.1729 2.0306 29 1 1.0773 0.3895 2.7340 30 1 3.8792 0.9393 4.9529 31 1 2.0642 1.0251 4.8933 32 1 3.8329 -1.3912 5.7131 33 1 2.1671 -0.9745 6.3086 34 1 4.5547 -3.0565 5.1421 35 1 4.8342 -3.4879 3.4381 36 1 4.7469 -1.7767 3.9202 37 1 1.1143 -3.8633 4.5596 38 1 2.6049 -4.8333 4.4808 39 1 2.3863 -3.6420 5.7850 40 1 2.9097 -2.2517 1.7762 41 1 3.1002 -3.9919 2.0980 42 1 1.4976 -3.2307 2.2410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690330605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = 44.701910 kcal Electronic energy + Delta-G solvation = -18609.191164 eV Core-core repulsion = 16011.741420 eV Total energy + Delta-G solvation = -2597.449743 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.58613 -35.83229 -34.74712 -32.48189 -29.42567 -27.35162 -27.21080 -26.67587 -25.93747 -25.04253 -22.07870 -20.35154 -19.90738 -18.35778 -16.39816 -16.09694 -14.99550 -14.64877 -14.56414 -14.35223 -13.79582 -13.51480 -12.97473 -12.75819 -12.48280 -12.26291 -12.03835 -11.87547 -11.54823 -11.23856 -11.08185 -10.98076 -10.88762 -10.80891 -10.75921 -10.63393 -10.36069 -10.20944 -10.13723 -9.89951 -9.61979 -8.94430 -8.42023 -8.30645 -7.12463 -5.93771 -3.96939 3.36690 3.40572 3.43826 4.09329 4.47037 4.72144 4.87492 4.99943 5.15132 5.27006 5.37316 5.39179 5.56435 5.61702 5.69559 5.75112 5.79876 5.85889 5.89987 5.90820 6.10672 6.14442 6.19859 6.27112 6.30476 6.41789 6.50208 6.64275 6.70119 6.77764 6.94083 7.05557 7.26035 7.38626 7.49437 7.81544 7.94297 8.34493 8.63489 8.69331 9.10347 9.68241 11.13167 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.006202 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.565845 B = 4513.597466 C = 4936.651133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.208 3.792 3 H 0.032 0.968 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 N -0.684 5.684 13 C 0.076 3.924 14 C 0.037 3.963 15 H 0.090 0.910 16 C -0.145 4.145 17 C -0.007 4.007 18 N -0.465 5.465 19 C 0.071 3.929 20 C -0.179 4.179 21 C -0.131 4.131 22 C -0.174 4.174 23 H 0.026 0.974 24 H 0.005 0.995 25 H 0.087 0.913 26 H 0.259 0.741 27 H 0.336 0.664 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.122 0.878 41 H 0.047 0.953 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 -4.295 14.534 15.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.100 3.900 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.055 4.055 14 C -0.072 4.072 15 H 0.107 0.893 16 C -0.184 4.184 17 C -0.136 4.136 18 N -0.189 5.189 19 C -0.019 4.019 20 C -0.237 4.237 21 C -0.188 4.188 22 C -0.232 4.232 23 H 0.045 0.955 24 H 0.024 0.976 25 H 0.106 0.894 26 H 0.069 0.931 27 H 0.156 0.844 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.140 0.860 41 H 0.066 0.934 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.922 -4.220 14.137 15.266 hybrid contribution 0.163 -0.437 -0.566 0.733 sum 4.085 -4.657 13.571 14.918 Atomic orbital electron populations 1.22416 1.00766 0.99092 1.00388 1.19227 0.89600 0.94340 0.86794 0.95050 1.21132 1.30109 1.12324 0.89706 0.92103 1.24947 0.95389 0.95215 0.98976 1.69878 1.37336 1.23228 1.23331 0.86600 0.79130 0.79632 0.82220 1.20427 1.21512 1.20361 1.61110 1.57416 1.09519 1.03604 1.21730 0.96866 0.95920 0.90940 1.23668 0.98248 0.91511 0.93763 0.89261 1.23395 1.02259 0.96590 0.96143 1.23894 0.99367 0.95289 0.95028 1.68758 1.47079 1.00470 1.02579 1.21461 0.92064 0.91241 0.97159 1.22592 0.97367 1.02675 1.01110 1.21784 1.01160 0.97423 0.98483 1.22618 1.01758 1.04348 0.94449 0.95499 0.97622 0.89429 0.93093 0.84421 0.91418 0.95480 0.91521 0.89506 0.90954 0.90274 0.93015 0.92066 0.91696 0.92184 0.92763 0.93480 0.86046 0.93426 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.94 37.16 0.33 -3.79 16 2 C 0.21 5.24 2.57 -68.86 -0.18 5.06 16 3 H 0.03 0.87 7.54 -51.93 -0.39 0.48 16 4 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -14.36 3.99 -107.95 -0.43 -14.79 16 13 C 0.08 1.38 5.64 -3.83 -0.02 1.36 16 14 C 0.04 0.56 2.46 -66.66 -0.16 0.39 16 15 H 0.09 1.38 5.71 -51.93 -0.30 1.09 16 16 C -0.15 -1.77 7.85 -25.79 -0.20 -1.98 16 17 C -0.01 -0.08 7.12 -2.77 -0.02 -0.10 16 18 N -0.47 -6.62 5.78 -215.11 -1.24 -7.87 16 19 C 0.07 0.96 0.72 -131.60 -0.09 0.86 16 20 C -0.18 -2.17 7.33 37.16 0.27 -1.90 16 21 C -0.13 -1.59 8.45 37.16 0.31 -1.27 16 22 C -0.17 -2.73 7.04 37.16 0.26 -2.47 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.21 16 24 H 0.00 0.11 7.86 -51.92 -0.41 -0.30 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.34 6.95 5.55 -39.29 -0.22 6.73 16 28 H 0.07 1.26 7.63 -51.93 -0.40 0.86 16 29 H 0.03 0.51 7.93 -51.93 -0.41 0.09 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 32 H 0.07 0.78 5.53 -51.93 -0.29 0.49 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.55 7.11 -51.94 -0.37 0.18 16 35 H 0.06 0.73 7.72 -51.93 -0.40 0.33 16 36 H 0.06 0.81 5.08 -51.93 -0.26 0.55 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.52 7.75 -51.92 -0.40 0.12 16 40 H 0.12 2.20 4.17 -51.93 -0.22 1.98 16 41 H 0.05 0.69 7.93 -51.93 -0.41 0.28 16 42 H 0.05 0.88 7.48 -51.93 -0.39 0.50 16 LS Contribution 310.19 15.07 4.67 4.67 Total: -1.00 -27.82 310.19 -8.55 -36.37 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.26 Total: 6.62 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 0.10 Total: -16.36 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.05 Total: -47.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.82 -8.55 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690330605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.069 kcal (2) G-P(sol) polarization free energy of solvation -27.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds