Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47273 * 2 1 4 4 C 1.50696 * 109.46905 * 239.99783 * 2 1 3 5 5 H 1.07998 * 120.00307 * 240.00237 * 4 2 1 6 6 C 1.37875 * 120.00105 * 60.00501 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00202 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47050 * 59.99835 * 8 6 4 10 10 H 1.48500 * 109.47167 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.46943 * 299.99908 * 8 6 4 12 12 N 1.46907 * 109.47101 * 119.99930 * 2 1 3 13 13 C 1.46897 * 111.00071 * 274.99992 * 12 2 1 14 14 C 1.52991 * 109.47198 * 196.26075 * 13 12 2 15 15 H 1.09000 * 112.95930 * 55.47444 * 14 13 12 16 16 C 1.53937 * 113.76050 * 187.12356 * 14 13 12 17 17 C 1.53940 * 86.34266 * 138.03569 * 16 14 13 18 18 N 1.47956 * 86.17813 * 336.28059 * 17 16 14 19 19 C 1.46896 * 111.00181 * 137.58562 * 18 17 16 20 20 C 1.53008 * 109.47045 * 316.98143 * 19 18 17 21 21 C 1.53000 * 109.47274 * 76.98020 * 19 18 17 22 22 C 1.53000 * 109.47384 * 196.97917 * 19 18 17 23 23 H 1.09000 * 109.47273 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.46971 * 300.00490 * 1 2 3 25 25 H 1.08997 * 109.47128 * 59.99580 * 1 2 3 26 26 H 0.96996 * 120.00119 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99532 * 38.94936 * 12 2 1 28 28 H 1.09001 * 109.46954 * 316.25947 * 13 12 2 29 29 H 1.08999 * 109.47365 * 76.25464 * 13 12 2 30 30 H 1.09002 * 113.73368 * 252.39186 * 16 14 13 31 31 H 1.08999 * 113.73200 * 23.67584 * 16 14 13 32 32 H 1.08998 * 113.75584 * 90.59441 * 17 16 14 33 33 H 1.09001 * 113.75617 * 221.84931 * 17 16 14 34 34 H 1.08988 * 109.47164 * 87.98422 * 20 19 18 35 35 H 1.08995 * 109.46950 * 207.99034 * 20 19 18 36 36 H 1.09003 * 109.46653 * 327.98510 * 20 19 18 37 37 H 1.09000 * 109.47316 * 60.00220 * 21 19 18 38 38 H 1.09005 * 109.47148 * 180.02562 * 21 19 18 39 39 H 1.09008 * 109.46905 * 299.99794 * 21 19 18 40 40 H 1.09002 * 109.47019 * 52.09062 * 22 19 18 41 41 H 1.08999 * 109.47499 * 172.08737 * 22 19 18 42 42 H 1.09001 * 109.47288 * 292.08936 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 1.8279 -2.5198 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2226 2.3469 14 6 2.9553 -0.3925 3.4426 15 1 3.9535 -0.6562 3.0931 16 6 2.9497 0.4036 4.7601 17 6 2.8620 -0.9600 5.4690 18 7 2.2846 -1.4686 4.2052 19 6 2.8432 -2.7833 3.8628 20 6 4.3534 -2.7756 4.1085 21 6 2.1901 -3.8577 4.7347 22 6 2.5679 -3.0862 2.3885 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5140 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 0.7089 1.1613 -3.4843 27 1 1.4495 -1.4979 1.4101 28 1 2.5125 1.1729 2.0306 29 1 1.0773 0.3895 2.7340 30 1 3.8792 0.9393 4.9529 31 1 2.0642 1.0251 4.8933 32 1 3.8329 -1.3912 5.7131 33 1 2.1671 -0.9745 6.3086 34 1 4.5547 -3.0565 5.1421 35 1 4.8342 -3.4879 3.4381 36 1 4.7469 -1.7767 3.9202 37 1 1.1143 -3.8633 4.5596 38 1 2.6049 -4.8333 4.4808 39 1 2.3863 -3.6420 5.7850 40 1 2.9097 -2.2517 1.7762 41 1 3.1002 -3.9919 2.0980 42 1 1.4976 -3.2307 2.2410 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690330605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = 26.859585 kcal Electronic energy + Delta-G solvation = -18609.964865 eV Core-core repulsion = 16011.741420 eV Total energy + Delta-G solvation = -2598.223445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.67630 -37.64763 -35.83295 -34.46640 -31.20464 -28.35407 -28.23349 -27.93070 -27.41664 -27.10483 -23.43854 -22.09490 -21.17207 -19.44529 -18.41270 -17.17521 -16.81144 -16.27970 -15.84836 -15.60172 -15.17786 -14.76931 -14.54709 -14.26309 -13.78032 -13.52158 -13.36340 -13.19611 -13.01863 -12.90816 -12.73556 -12.56455 -12.26322 -12.17103 -12.14008 -12.05927 -11.98214 -11.83793 -11.39868 -11.26149 -11.18808 -10.89082 -10.45293 -9.49828 -8.85674 -8.07371 -6.18346 1.43550 1.45178 1.52834 2.45110 3.03406 3.20736 3.55309 3.76730 3.97374 4.08620 4.18750 4.25382 4.42333 4.50675 4.56284 4.67244 4.72188 4.73518 4.81550 4.87685 4.89987 4.92381 4.97882 5.04062 5.05037 5.08379 5.14360 5.20455 5.27509 5.34857 5.43930 5.54843 5.55391 5.70458 5.80993 5.92012 6.29537 6.36980 6.69866 6.86918 6.99394 7.51622 8.98118 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031328 B = 0.006202 C = 0.005670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.565845 B = 4513.597466 C = 4936.651133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.512 4.512 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.678 5.678 13 C 0.078 3.922 14 C 0.036 3.964 15 H 0.085 0.915 16 C -0.136 4.136 17 C 0.002 3.998 18 N -0.483 5.483 19 C 0.069 3.931 20 C -0.174 4.174 21 C -0.126 4.126 22 C -0.171 4.171 23 H 0.027 0.973 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.260 0.740 27 H 0.338 0.662 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -5.281 15.969 17.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.103 3.897 3 H 0.019 0.981 4 C -0.551 4.551 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.052 4.052 14 C -0.073 4.073 15 H 0.103 0.897 16 C -0.174 4.174 17 C -0.127 4.127 18 N -0.206 5.206 19 C -0.021 4.021 20 C -0.233 4.233 21 C -0.183 4.183 22 C -0.229 4.229 23 H 0.046 0.954 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.075 0.925 29 H 0.039 0.961 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.850 -5.214 15.597 17.145 hybrid contribution -0.142 -0.123 -0.979 0.997 sum 4.707 -5.336 14.618 16.258 Atomic orbital electron populations 1.22236 1.00463 0.98852 0.99827 1.19013 0.89724 0.92767 0.88164 0.98105 1.21425 1.30272 1.12364 0.91021 0.92660 1.25720 0.95522 0.95889 1.01876 1.70009 1.38116 1.24346 1.23941 0.85598 0.78677 0.78639 0.78590 1.19773 1.21067 1.19825 1.61105 1.56886 1.09654 1.03404 1.21765 0.97237 0.95340 0.90853 1.23526 0.97078 0.92969 0.93737 0.89702 1.23357 1.03192 0.96966 0.93902 1.23947 1.00259 0.94316 0.94128 1.68734 1.47688 1.00488 1.03710 1.21481 0.93346 0.91453 0.95802 1.22531 0.95923 1.02456 1.02348 1.21735 1.00282 0.97365 0.98960 1.22516 1.00699 1.03594 0.96046 0.95420 0.96052 0.91983 0.93083 0.84170 0.92524 0.96135 0.89639 0.89662 0.89424 0.89099 0.90985 0.92197 0.92134 0.93355 0.91753 0.92029 0.88474 0.92713 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.75 8.94 71.98 0.64 -7.11 16 2 C 0.21 10.96 2.57 44.17 0.11 11.08 16 3 H 0.00 0.06 7.54 -2.39 -0.02 0.04 16 4 C -0.51 -28.83 8.84 25.60 0.23 -28.60 16 5 H 0.06 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.44 5.30 84.65 0.45 0.89 16 7 N -0.92 -54.15 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 12 N -0.68 -29.02 3.99 -495.46 -1.98 -31.00 16 13 C 0.08 2.86 5.64 86.30 0.49 3.35 16 14 C 0.04 1.05 2.46 45.02 0.11 1.16 16 15 H 0.09 2.54 5.71 -2.39 -0.01 2.53 16 16 C -0.14 -3.00 7.85 31.24 0.25 -2.76 16 17 C 0.00 0.03 7.12 86.41 0.62 0.65 16 18 N -0.48 -12.88 5.78 -834.47 -4.83 -17.71 16 19 C 0.07 1.75 0.72 3.53 0.00 1.75 16 20 C -0.17 -3.78 7.33 71.98 0.53 -3.25 16 21 C -0.13 -2.75 8.45 71.98 0.61 -2.14 16 22 C -0.17 -5.28 7.04 71.98 0.51 -4.77 16 23 H 0.03 1.33 8.13 -2.39 -0.02 1.31 16 24 H 0.02 0.95 7.86 -2.38 -0.02 0.93 16 25 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.34 14.22 5.55 -89.69 -0.50 13.72 16 28 H 0.06 2.16 7.63 -2.39 -0.02 2.14 16 29 H 0.02 0.77 7.93 -2.39 -0.02 0.75 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 32 H 0.09 1.54 5.53 -2.39 -0.01 1.53 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.27 7.11 -2.39 -0.02 1.25 16 35 H 0.06 1.31 7.72 -2.39 -0.02 1.29 16 36 H 0.06 1.37 5.08 -2.39 -0.01 1.36 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.06 1.17 7.75 -2.38 -0.02 1.15 16 40 H 0.10 3.53 4.17 -2.39 -0.01 3.52 16 41 H 0.05 1.55 7.93 -2.39 -0.02 1.54 16 42 H 0.04 1.30 7.48 -2.39 -0.02 1.28 16 Total: -1.00 -59.68 310.19 0.49 -59.19 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 0.49 Total: 26.62 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 4.54 Total: -29.76 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -6.56 Total: -102.61 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -59.68 0.49 -59.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690330605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.047 kcal (2) G-P(sol) polarization free energy of solvation -59.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds