Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.50701 * 109.46736 * 120.00117 * 2 1 3 5 5 H 1.08000 * 120.00536 * 30.52753 * 4 2 1 6 6 C 1.37883 * 119.99542 * 210.52901 * 4 2 1 7 7 N 1.31513 * 120.00155 * 351.34984 * 6 4 2 8 8 Si 1.86799 * 119.99795 * 171.35750 * 6 4 2 9 9 H 1.48498 * 109.47228 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46958 * 239.99600 * 8 6 4 11 11 H 1.48495 * 109.47415 * 119.99976 * 8 6 4 12 12 N 1.46894 * 109.47294 * 240.00073 * 2 1 3 13 13 C 1.46894 * 111.00297 * 85.00025 * 12 2 1 14 14 C 1.53003 * 109.47609 * 186.85209 * 13 12 2 15 15 H 1.09001 * 112.74398 * 289.81212 * 14 13 12 16 16 C 1.53508 * 113.47982 * 158.95645 * 14 13 12 17 17 C 1.53509 * 83.57572 * 219.21050 * 16 14 13 18 18 N 1.47476 * 87.93399 * 26.02508 * 17 16 14 19 19 C 1.46906 * 111.00010 * 221.29649 * 18 17 16 20 20 C 1.53000 * 109.46885 * 161.23636 * 19 18 17 21 21 C 1.52994 * 109.47290 * 281.24121 * 19 18 17 22 22 C 1.52999 * 109.46903 * 41.24223 * 19 18 17 23 23 H 1.09000 * 109.46850 * 294.88264 * 1 2 3 24 24 H 1.08999 * 109.46773 * 54.88693 * 1 2 3 25 25 H 1.08997 * 109.46755 * 174.88306 * 1 2 3 26 26 H 0.97003 * 119.99679 * 3.67729 * 7 6 4 27 27 H 1.00902 * 111.00136 * 208.96096 * 12 2 1 28 28 H 1.09002 * 109.47004 * 306.84871 * 13 12 2 29 29 H 1.08992 * 109.47468 * 66.84500 * 13 12 2 30 30 H 1.09003 * 114.16928 * 332.85892 * 16 14 13 31 31 H 1.09001 * 114.17053 * 105.55894 * 16 14 13 32 32 H 1.09000 * 113.47318 * 271.25728 * 17 16 14 33 33 H 1.09000 * 113.53272 * 140.80665 * 17 16 14 34 34 H 1.09001 * 109.46882 * 47.35110 * 20 19 18 35 35 H 1.09004 * 109.46686 * 167.33991 * 20 19 18 36 36 H 1.08993 * 109.47760 * 287.34831 * 20 19 18 37 37 H 1.09001 * 109.46960 * 59.99857 * 21 19 18 38 38 H 1.08993 * 109.47199 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.46706 * 300.00317 * 21 19 18 40 40 H 1.09004 * 109.47594 * 50.02503 * 22 19 18 41 41 H 1.08998 * 109.46862 * 170.02218 * 22 19 18 42 42 H 1.08999 * 109.47259 * 290.02470 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 1.4528 -1.5107 1.6664 6 6 3.2319 -0.3387 1.7998 7 7 4.0181 0.5135 1.1792 8 14 3.7402 -1.0456 3.4524 9 1 2.6882 -1.9743 3.9383 10 1 3.9155 0.0583 4.4302 11 1 5.0208 -1.7824 3.3029 12 7 2.0198 -0.6924 -1.1994 13 6 2.0826 0.2226 -2.3468 14 6 2.4307 -0.5669 -3.6104 15 1 3.4589 -0.9288 -3.6113 16 6 2.0317 0.1492 -4.9083 17 6 1.6393 -1.2633 -5.3638 18 7 1.4410 -1.6083 -3.9437 19 6 1.9670 -2.9480 -3.6491 20 6 2.1783 -3.0925 -2.1406 21 6 0.9691 -4.0043 -4.1279 22 6 3.3014 -3.1423 -4.3719 23 1 -0.3633 0.4324 0.9323 24 1 -0.3633 0.5911 -0.8407 25 1 -0.3633 -1.0236 -0.0917 26 1 3.7308 0.9213 0.3473 27 1 2.9174 -1.1206 -1.0286 28 1 1.1158 0.7088 -2.4771 29 1 2.8479 0.9777 -2.1679 30 1 1.1900 0.8332 -4.8000 31 1 2.8700 0.5783 -5.4571 32 1 2.4564 -1.8106 -5.8337 33 1 0.7208 -1.2920 -5.9500 34 1 1.2925 -2.7374 -1.6140 35 1 2.3500 -4.1409 -1.8967 36 1 3.0427 -2.5023 -1.8366 37 1 0.8187 -3.9013 -5.2025 38 1 1.3592 -4.9982 -3.9088 39 1 0.0185 -3.8658 -3.6129 40 1 3.9524 -2.2921 -4.1679 41 1 3.7767 -4.0569 -4.0175 42 1 3.1260 -3.2162 -5.4451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690330607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 43.694487 kcal Electronic energy + Delta-G solvation = -18936.331419 eV Core-core repulsion = 16338.837991 eV Total energy + Delta-G solvation = -2597.493428 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.64935 -35.88688 -34.71476 -32.22815 -29.72657 -27.31571 -27.15041 -26.69574 -26.03944 -24.46722 -21.93723 -20.25940 -19.93437 -18.32919 -16.88884 -16.00478 -14.82283 -14.74030 -14.41333 -13.85060 -13.74674 -13.62917 -13.24509 -13.02075 -12.60566 -12.26788 -11.93652 -11.59305 -11.48757 -11.20500 -11.08562 -10.91370 -10.88354 -10.78284 -10.63403 -10.57922 -10.26775 -10.15659 -9.99842 -9.80492 -9.67481 -8.60406 -8.41272 -8.24469 -6.98657 -6.41843 -4.12246 3.42653 3.45010 3.60213 4.27591 4.49542 4.72617 4.94080 5.06693 5.21813 5.27444 5.31819 5.46888 5.60232 5.71506 5.73980 5.82596 5.90346 5.94585 5.98180 6.04064 6.14084 6.20345 6.29625 6.33997 6.41722 6.50787 6.57278 6.59964 6.75797 6.83037 6.85740 6.88734 7.12301 7.34249 7.46585 7.61749 8.01402 8.42531 8.59508 8.76162 8.91936 9.60915 10.96358 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.007114 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.008102 B = 3935.196308 C = 4204.063202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.185 3.815 3 H 0.002 0.998 4 C -0.587 4.587 5 H 0.053 0.947 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 1.073 2.927 9 H -0.288 1.288 10 H -0.288 1.288 11 H -0.289 1.289 12 N -0.671 5.671 13 C 0.071 3.929 14 C 0.031 3.969 15 H 0.076 0.924 16 C -0.144 4.144 17 C -0.020 4.020 18 N -0.433 5.433 19 C 0.070 3.930 20 C -0.127 4.127 21 C -0.128 4.128 22 C -0.184 4.184 23 H 0.037 0.963 24 H 0.020 0.980 25 H 0.044 0.956 26 H 0.267 0.733 27 H 0.336 0.664 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -4.623 -11.897 12.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.078 3.922 3 H 0.020 0.980 4 C -0.626 4.626 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.549 5.549 8 Si 0.902 3.098 9 H -0.214 1.214 10 H -0.214 1.214 11 H -0.215 1.215 12 N -0.306 5.306 13 C -0.059 4.059 14 C -0.078 4.078 15 H 0.094 0.906 16 C -0.182 4.182 17 C -0.149 4.149 18 N -0.156 5.156 19 C -0.020 4.020 20 C -0.184 4.184 21 C -0.186 4.186 22 C -0.242 4.242 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.156 0.844 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.373 -4.918 -10.605 11.928 hybrid contribution 0.448 0.447 -1.317 1.461 sum -1.925 -4.470 -11.922 12.877 Atomic orbital electron populations 1.21621 0.98146 0.99779 0.97813 1.19292 0.91480 0.93147 0.88249 0.98034 1.22102 1.08570 1.20920 1.11007 0.92886 1.25915 0.93192 0.96107 1.03312 1.70796 1.36491 1.28881 1.18744 0.83479 0.75547 0.75810 0.74949 1.21423 1.21415 1.21508 1.61726 1.32211 1.31853 1.04800 1.21818 0.99169 0.93823 0.91116 1.23500 0.95709 0.93310 0.95298 0.90608 1.23182 1.01411 0.96516 0.97103 1.23937 1.01078 0.95982 0.93866 1.69201 1.39054 1.01542 1.05791 1.21496 0.92143 0.90792 0.97559 1.22042 1.05051 0.99022 0.92296 1.21708 0.99578 0.97248 1.00061 1.22625 0.98962 1.02381 1.00212 0.94347 0.96079 0.93692 0.92153 0.84359 0.91943 0.96580 0.89296 0.91474 0.90918 0.90682 0.88726 0.94673 0.92268 0.93669 0.92887 0.91945 0.92024 0.92208 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.35 37.16 0.35 -2.26 16 2 C 0.18 4.61 2.26 -68.86 -0.16 4.45 16 3 H 0.00 0.05 6.52 -51.93 -0.34 -0.28 16 4 C -0.59 -16.10 8.28 -34.44 -0.29 -16.39 16 5 H 0.05 1.49 7.83 -52.49 -0.41 1.08 16 6 C 0.02 0.54 5.44 -17.82 -0.10 0.45 16 7 N -0.91 -26.75 13.62 55.43 0.75 -26.00 16 8 Si 1.07 25.01 29.91 -169.99 -5.08 19.93 16 9 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.67 -14.72 3.12 -107.96 -0.34 -15.06 16 13 C 0.07 1.38 5.55 -3.83 -0.02 1.36 16 14 C 0.03 0.50 2.61 -71.44 -0.19 0.32 16 15 H 0.08 1.24 5.42 -51.93 -0.28 0.96 16 16 C -0.14 -1.91 8.00 -26.20 -0.21 -2.12 16 17 C -0.02 -0.25 7.05 -7.56 -0.05 -0.31 16 18 N -0.43 -6.78 5.88 -220.84 -1.30 -8.08 16 19 C 0.07 1.04 0.72 -131.60 -0.10 0.95 16 20 C -0.13 -2.21 6.83 37.16 0.25 -1.95 16 21 C -0.13 -1.72 8.58 37.15 0.32 -1.40 16 22 C -0.18 -2.41 7.25 37.16 0.27 -2.14 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 24 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.27 7.83 6.75 -40.82 -0.28 7.56 16 27 H 0.34 7.93 6.09 -39.29 -0.24 7.69 16 28 H 0.06 1.24 7.23 -51.93 -0.38 0.86 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.09 1.19 8.01 -51.93 -0.42 0.78 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.87 5.06 -51.93 -0.26 0.60 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.92 6.93 -51.93 -0.36 1.56 16 35 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.06 1.13 5.27 -51.93 -0.27 0.85 16 37 H 0.04 0.55 7.84 -51.93 -0.41 0.14 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.85 5.50 -51.93 -0.29 0.56 16 41 H 0.06 0.75 8.11 -51.93 -0.42 0.33 16 42 H 0.05 0.64 6.31 -51.93 -0.33 0.31 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -27.97 311.22 -8.43 -36.40 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -7.24 Total: 7.15 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 0.09 Total: -19.04 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -0.88 Total: -49.13 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.97 -8.43 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690330607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.092 kcal (2) G-P(sol) polarization free energy of solvation -27.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds