Wall clock time and date at job start Mon Mar 30 2020 03:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.46901 * 2 1 4 4 C 1.50701 * 109.46736 * 120.00117 * 2 1 3 5 5 H 1.08000 * 120.00536 * 30.52753 * 4 2 1 6 6 C 1.37883 * 119.99542 * 210.52901 * 4 2 1 7 7 N 1.31513 * 120.00155 * 351.34984 * 6 4 2 8 8 Si 1.86799 * 119.99795 * 171.35750 * 6 4 2 9 9 H 1.48498 * 109.47228 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46958 * 239.99600 * 8 6 4 11 11 H 1.48495 * 109.47415 * 119.99976 * 8 6 4 12 12 N 1.46894 * 109.47294 * 240.00073 * 2 1 3 13 13 C 1.46894 * 111.00297 * 85.00025 * 12 2 1 14 14 C 1.53003 * 109.47609 * 186.85209 * 13 12 2 15 15 H 1.09001 * 112.74398 * 289.81212 * 14 13 12 16 16 C 1.53508 * 113.47982 * 158.95645 * 14 13 12 17 17 C 1.53509 * 83.57572 * 219.21050 * 16 14 13 18 18 N 1.47476 * 87.93399 * 26.02508 * 17 16 14 19 19 C 1.46906 * 111.00010 * 221.29649 * 18 17 16 20 20 C 1.53000 * 109.46885 * 161.23636 * 19 18 17 21 21 C 1.52994 * 109.47290 * 281.24121 * 19 18 17 22 22 C 1.52999 * 109.46903 * 41.24223 * 19 18 17 23 23 H 1.09000 * 109.46850 * 294.88264 * 1 2 3 24 24 H 1.08999 * 109.46773 * 54.88693 * 1 2 3 25 25 H 1.08997 * 109.46755 * 174.88306 * 1 2 3 26 26 H 0.97003 * 119.99679 * 3.67729 * 7 6 4 27 27 H 1.00902 * 111.00136 * 208.96096 * 12 2 1 28 28 H 1.09002 * 109.47004 * 306.84871 * 13 12 2 29 29 H 1.08992 * 109.47468 * 66.84500 * 13 12 2 30 30 H 1.09003 * 114.16928 * 332.85892 * 16 14 13 31 31 H 1.09001 * 114.17053 * 105.55894 * 16 14 13 32 32 H 1.09000 * 113.47318 * 271.25728 * 17 16 14 33 33 H 1.09000 * 113.53272 * 140.80665 * 17 16 14 34 34 H 1.09001 * 109.46882 * 47.35110 * 20 19 18 35 35 H 1.09004 * 109.46686 * 167.33991 * 20 19 18 36 36 H 1.08993 * 109.47760 * 287.34831 * 20 19 18 37 37 H 1.09001 * 109.46960 * 59.99857 * 21 19 18 38 38 H 1.08993 * 109.47199 * 180.02562 * 21 19 18 39 39 H 1.09002 * 109.46706 * 300.00317 * 21 19 18 40 40 H 1.09004 * 109.47594 * 50.02503 * 22 19 18 41 41 H 1.08998 * 109.46862 * 170.02218 * 22 19 18 42 42 H 1.08999 * 109.47259 * 290.02470 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 1.4528 -1.5107 1.6664 6 6 3.2319 -0.3387 1.7998 7 7 4.0181 0.5135 1.1792 8 14 3.7402 -1.0456 3.4524 9 1 2.6882 -1.9743 3.9383 10 1 3.9155 0.0583 4.4302 11 1 5.0208 -1.7824 3.3029 12 7 2.0198 -0.6924 -1.1994 13 6 2.0826 0.2226 -2.3468 14 6 2.4307 -0.5669 -3.6104 15 1 3.4589 -0.9288 -3.6113 16 6 2.0317 0.1492 -4.9083 17 6 1.6393 -1.2633 -5.3638 18 7 1.4410 -1.6083 -3.9437 19 6 1.9670 -2.9480 -3.6491 20 6 2.1783 -3.0925 -2.1406 21 6 0.9691 -4.0043 -4.1279 22 6 3.3014 -3.1423 -4.3719 23 1 -0.3633 0.4324 0.9323 24 1 -0.3633 0.5911 -0.8407 25 1 -0.3633 -1.0236 -0.0917 26 1 3.7308 0.9213 0.3473 27 1 2.9174 -1.1206 -1.0286 28 1 1.1158 0.7088 -2.4771 29 1 2.8479 0.9777 -2.1679 30 1 1.1900 0.8332 -4.8000 31 1 2.8700 0.5783 -5.4571 32 1 2.4564 -1.8106 -5.8337 33 1 0.7208 -1.2920 -5.9500 34 1 1.2925 -2.7374 -1.6140 35 1 2.3500 -4.1409 -1.8967 36 1 3.0427 -2.5023 -1.8366 37 1 0.8187 -3.9013 -5.2025 38 1 1.3592 -4.9982 -3.9088 39 1 0.0185 -3.8658 -3.6129 40 1 3.9524 -2.2921 -4.1679 41 1 3.7767 -4.0569 -4.0175 42 1 3.1260 -3.2162 -5.4451 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690330607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:19 Heat of formation + Delta-G solvation = 25.760033 kcal Electronic energy + Delta-G solvation = -18937.109115 eV Core-core repulsion = 16338.837991 eV Total energy + Delta-G solvation = -2598.271125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84405 -37.77999 -35.91158 -34.22316 -31.55470 -28.41326 -28.25062 -28.11661 -27.51203 -26.53860 -23.40941 -21.99972 -21.31281 -19.55662 -18.87390 -17.21273 -16.36864 -16.24354 -16.00711 -15.64623 -15.12843 -15.07180 -14.79051 -14.57127 -13.81537 -13.48103 -13.33894 -13.24282 -12.91520 -12.83193 -12.72931 -12.62833 -12.26958 -12.10790 -12.01813 -11.96282 -11.88866 -11.81661 -11.45813 -11.34482 -11.06269 -10.71078 -10.40622 -9.48711 -8.83990 -8.65660 -6.36199 1.52518 1.59943 1.77992 2.54237 3.04008 3.15944 3.58198 3.74668 3.92633 4.08284 4.09771 4.21826 4.37061 4.44156 4.49057 4.55735 4.63583 4.69736 4.76318 4.83027 4.88578 4.91291 4.95087 4.97171 4.98997 5.08441 5.10866 5.16516 5.19587 5.23176 5.33343 5.48784 5.51007 5.64402 5.88977 5.93495 6.20630 6.41942 6.53316 6.68520 6.93099 7.44143 8.72689 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.007114 C = 0.006659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.008102 B = 3935.196308 C = 4204.063202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.184 3.816 3 H -0.030 1.030 4 C -0.596 4.596 5 H 0.043 0.957 6 C -0.026 4.026 7 N -0.934 5.934 8 Si 1.119 2.881 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.657 5.657 13 C 0.074 3.926 14 C 0.029 3.971 15 H 0.075 0.925 16 C -0.133 4.133 17 C -0.010 4.010 18 N -0.455 5.455 19 C 0.068 3.932 20 C -0.117 4.117 21 C -0.122 4.122 22 C -0.178 4.178 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.043 0.957 26 H 0.255 0.745 27 H 0.324 0.676 28 H 0.057 0.943 29 H -0.002 1.002 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.043 0.957 36 H 0.036 0.964 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 -5.702 -13.357 14.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.076 3.924 3 H -0.013 1.013 4 C -0.635 4.635 5 H 0.062 0.938 6 C -0.225 4.225 7 N -0.572 5.572 8 Si 0.942 3.058 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.290 5.290 13 C -0.056 4.056 14 C -0.081 4.081 15 H 0.092 0.908 16 C -0.171 4.171 17 C -0.139 4.139 18 N -0.178 5.178 19 C -0.021 4.021 20 C -0.175 4.175 21 C -0.180 4.180 22 C -0.235 4.235 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.144 0.856 28 H 0.076 0.924 29 H 0.016 0.984 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.505 -5.998 -12.092 13.728 hybrid contribution 0.431 0.796 -0.886 1.267 sum -2.075 -5.202 -12.978 14.135 Atomic orbital electron populations 1.21480 0.96328 0.99939 0.98477 1.19252 0.92935 0.91250 0.88974 1.01256 1.22326 1.08553 1.20618 1.12043 0.93816 1.27232 0.93410 0.95845 1.06018 1.70913 1.37161 1.30295 1.18787 0.82889 0.75904 0.75697 0.71345 1.19912 1.20729 1.20672 1.61697 1.31281 1.31639 1.04345 1.21850 0.98290 0.93580 0.91872 1.23442 0.95840 0.94167 0.94611 0.90767 1.23159 1.01982 0.96927 0.95048 1.23964 1.02273 0.95332 0.92284 1.69167 1.38996 1.01619 1.07971 1.21501 0.93794 0.91106 0.95741 1.21874 1.02354 0.98869 0.94423 1.21653 0.98304 0.97205 1.00842 1.22544 0.97483 1.02232 1.01287 0.94323 0.94613 0.93788 0.93482 0.85625 0.92421 0.98419 0.89475 0.89391 0.89273 0.89423 0.91928 0.93775 0.94507 0.91964 0.91689 0.93444 0.92927 0.91706 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.75 9.35 71.98 0.67 -4.07 16 2 C 0.18 9.43 2.26 44.17 0.10 9.53 16 3 H -0.03 -1.73 6.52 -2.39 -0.02 -1.75 16 4 C -0.60 -33.47 8.28 25.60 0.21 -33.26 16 5 H 0.04 2.49 7.83 -2.91 -0.02 2.47 16 6 C -0.03 -1.47 5.44 84.66 0.46 -1.01 16 7 N -0.93 -56.07 13.62 21.45 0.29 -55.77 16 8 Si 1.12 50.44 29.91 68.60 2.05 52.49 16 9 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.66 -29.76 3.12 -495.46 -1.55 -31.30 16 13 C 0.07 2.95 5.55 86.31 0.48 3.43 16 14 C 0.03 0.92 2.61 42.18 0.11 1.03 16 15 H 0.07 2.38 5.42 -2.39 -0.01 2.36 16 16 C -0.13 -3.22 8.00 30.94 0.25 -2.97 16 17 C -0.01 -0.23 7.05 83.57 0.59 0.36 16 18 N -0.45 -13.52 5.88 -852.62 -5.02 -18.54 16 19 C 0.07 1.93 0.72 3.52 0.00 1.93 16 20 C -0.12 -4.11 6.83 71.98 0.49 -3.62 16 21 C -0.12 -2.98 8.58 71.98 0.62 -2.36 16 22 C -0.18 -4.20 7.25 71.98 0.52 -3.68 16 23 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.03 1.48 7.49 -2.39 -0.02 1.47 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.25 15.55 6.75 -92.71 -0.63 14.93 16 27 H 0.32 15.98 6.09 -89.69 -0.55 15.43 16 28 H 0.06 2.31 7.23 -2.39 -0.02 2.30 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.09 2.16 8.01 -2.39 -0.02 2.14 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.09 1.75 5.06 -2.39 -0.01 1.74 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 2.58 6.93 -2.39 -0.02 2.57 16 35 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 36 H 0.04 1.43 5.27 -2.39 -0.01 1.42 16 37 H 0.06 1.30 7.84 -2.39 -0.02 1.28 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.35 5.50 -2.39 -0.01 1.34 16 41 H 0.06 1.47 8.11 -2.39 -0.02 1.45 16 42 H 0.08 1.49 6.31 -2.39 -0.02 1.48 16 Total: -1.00 -61.02 311.22 0.86 -60.16 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.58 Total: 27.66 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 4.50 Total: -34.70 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -6.27 Total: -105.61 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.05 Total: 52.49 kcal Total: -61.02 0.86 -60.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690330607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.915 kcal (2) G-P(sol) polarization free energy of solvation -61.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds