Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46970 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00457 * 2 1 3 5 5 H 1.07993 * 119.99879 * 119.99840 * 4 2 1 6 6 C 1.37875 * 119.99653 * 299.99866 * 4 2 1 7 7 N 1.31511 * 120.00423 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99585 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46898 * 90.00340 * 8 6 4 10 10 H 1.48495 * 109.46982 * 209.99868 * 8 6 4 11 11 H 1.48500 * 109.47464 * 330.00507 * 8 6 4 12 12 N 1.46902 * 109.46894 * 240.00648 * 2 1 3 13 13 C 1.46906 * 110.99768 * 183.99804 * 12 2 1 14 14 C 1.46900 * 111.00116 * 60.04894 * 12 2 1 15 15 H 1.09001 * 109.51634 * 308.42615 * 14 12 2 16 16 C 1.53115 * 109.52210 * 188.30447 * 14 12 2 17 17 C 1.53034 * 109.27985 * 182.43565 * 16 14 12 18 18 N 1.46849 * 109.52133 * 59.17708 * 17 16 14 19 19 C 1.46843 * 111.20039 * 298.25694 * 18 17 16 20 20 C 1.52992 * 109.46659 * 181.76014 * 19 18 17 21 21 C 1.53004 * 109.46286 * 301.73064 * 19 18 17 22 22 C 1.53041 * 109.51987 * 61.74104 * 19 18 17 23 23 H 1.09006 * 109.46997 * 293.34677 * 1 2 3 24 24 H 1.08998 * 109.47343 * 53.34766 * 1 2 3 25 25 H 1.08998 * 109.46981 * 173.34953 * 1 2 3 26 26 H 0.97004 * 120.00183 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47212 * 60.00053 * 13 12 2 28 28 H 1.09003 * 109.46627 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47141 * 299.99470 * 13 12 2 30 30 H 1.09001 * 109.50477 * 302.37770 * 16 14 12 31 31 H 1.09006 * 109.50623 * 62.45449 * 16 14 12 32 32 H 1.09004 * 109.46754 * 179.19252 * 17 16 14 33 33 H 1.08998 * 109.46565 * 299.16017 * 17 16 14 34 34 H 1.00909 * 111.00039 * 174.16140 * 18 17 16 35 35 H 1.09000 * 109.47297 * 59.99987 * 20 19 18 36 36 H 1.09001 * 109.47497 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47022 * 300.00075 * 20 19 18 38 38 H 1.08997 * 109.47481 * 59.99469 * 21 19 18 39 39 H 1.09000 * 109.47295 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47224 * 299.99586 * 21 19 18 41 41 H 1.09007 * 109.50077 * 180.88270 * 22 19 18 42 42 H 1.08997 * 109.50206 * 60.76436 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.6298 -0.5461 4.4122 10 1 1.3434 -0.9496 5.1119 11 1 2.4861 -2.5665 3.7117 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7953 -1.1867 14 6 1.5495 -0.0255 -2.4211 15 1 0.4691 0.1093 -2.3697 16 6 1.9007 -0.8832 -3.6399 17 6 1.4631 -0.1554 -4.9130 18 7 2.1430 1.1437 -4.9939 19 6 1.7838 2.0027 -3.8584 20 6 2.4778 3.3582 -4.0049 21 6 0.2676 2.2066 -3.8330 22 6 2.2309 1.3392 -2.5537 23 1 -0.3633 0.4073 0.9436 24 1 -0.3634 0.6135 -0.8244 25 1 -0.3633 -1.0207 -0.1190 26 1 0.7082 1.1606 3.4845 27 1 3.8022 -1.3545 -0.3065 28 1 3.8208 -1.3116 -2.0860 29 1 3.9192 0.2040 -1.1583 30 1 2.9773 -1.0513 -3.6685 31 1 1.3846 -1.8409 -3.5718 32 1 1.7247 -0.7570 -5.7835 33 1 0.3845 0.0000 -4.8900 34 1 1.9445 1.6018 -5.8708 35 1 2.1587 3.8313 -4.9336 36 1 2.2116 3.9958 -3.1618 37 1 3.5580 3.2132 -4.0235 38 1 -0.2272 1.2410 -3.7290 39 1 0.0008 2.8438 -2.9899 40 1 -0.0509 2.6799 -4.7617 41 1 1.9502 1.9697 -1.7100 42 1 3.3127 1.2062 -2.5653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691729293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = 2.993379 kcal Electronic energy + Delta-G solvation = -19006.553187 eV Core-core repulsion = 16407.294826 eV Total energy + Delta-G solvation = -2599.258361 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71555 -36.50029 -33.18512 -32.42324 -30.23210 -28.89629 -27.16751 -26.79456 -25.41420 -24.15652 -22.75901 -20.81992 -19.15376 -18.06927 -16.26104 -15.91053 -15.24334 -15.07449 -14.42164 -13.99320 -13.72051 -13.33428 -13.13333 -12.94426 -12.47397 -12.17548 -12.03099 -11.77324 -11.54664 -11.39540 -11.34303 -11.02707 -10.94747 -10.82024 -10.65802 -10.39246 -10.11800 -10.06188 -9.97738 -9.90256 -9.39915 -8.80466 -8.37505 -8.25517 -7.01056 -5.97648 -4.01975 3.32104 3.38688 3.42997 4.29890 4.43417 4.89869 5.06287 5.11743 5.26297 5.33925 5.41648 5.47642 5.66797 5.77068 5.78017 5.87951 5.94507 5.96626 6.06058 6.13900 6.20576 6.29824 6.37129 6.41095 6.47664 6.56012 6.66855 6.78654 6.88414 6.97042 7.10382 7.23205 7.27154 7.54342 7.58450 7.81533 7.87087 8.29247 8.39715 8.68790 9.05526 9.62942 11.08682 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.006668 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.466094 B = 4198.341716 C = 4422.196406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.532 5.532 13 C 0.035 3.965 14 C 0.081 3.919 15 H 0.078 0.922 16 C -0.109 4.109 17 C 0.057 3.943 18 N -0.679 5.679 19 C 0.112 3.888 20 C -0.138 4.138 21 C -0.181 4.181 22 C -0.135 4.135 23 H 0.086 0.914 24 H 0.005 0.995 25 H 0.031 0.969 26 H 0.259 0.741 27 H 0.071 0.929 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.031 0.969 34 H 0.333 0.667 35 H 0.048 0.952 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 2.074 -13.389 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.106 3.894 3 H 0.018 0.982 4 C -0.540 4.540 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.114 4.114 14 C -0.029 4.029 15 H 0.096 0.904 16 C -0.147 4.147 17 C -0.072 4.072 18 N -0.309 5.309 19 C 0.021 3.979 20 C -0.195 4.195 21 C -0.240 4.240 22 C -0.174 4.174 23 H 0.105 0.895 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.050 0.950 34 H 0.150 0.850 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.934 1.455 -12.911 13.026 hybrid contribution -0.348 0.741 0.652 1.047 sum 0.586 2.196 -12.259 12.468 Atomic orbital electron populations 1.21837 0.98063 0.98469 1.00771 1.19221 0.92062 0.92187 0.85917 0.98163 1.21207 1.30700 1.12206 0.89891 0.91941 1.24927 0.95282 0.95130 0.98971 1.69888 1.37017 1.23179 1.23283 0.86551 0.78432 0.80118 0.82631 1.20846 1.21314 1.19873 1.62364 1.09239 1.51795 1.02063 1.22246 0.89210 0.99121 1.00810 1.21769 0.99510 0.90760 0.90816 0.90443 1.21655 1.01927 0.98275 0.92856 1.21940 0.96021 0.90585 0.98680 1.60529 1.61603 1.04388 1.04423 1.20883 0.92620 0.92464 0.91934 1.21820 1.01078 0.95501 1.01143 1.22569 0.97575 1.02323 1.01539 1.22273 1.01565 0.98411 0.95190 0.89512 0.97570 0.94975 0.93077 0.91063 0.93689 0.96686 0.91394 0.91445 0.91383 0.95042 0.84952 0.93248 0.92152 0.92031 0.91820 0.91943 0.93411 0.91358 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 8.63 37.15 0.32 -2.97 16 2 C 0.21 5.36 1.84 -68.87 -0.13 5.24 16 3 H 0.00 0.02 6.62 -51.93 -0.34 -0.32 16 4 C -0.50 -13.84 7.93 -34.44 -0.27 -14.11 16 5 H 0.06 1.73 6.39 -52.49 -0.34 1.39 16 6 C 0.06 1.60 5.28 -17.82 -0.09 1.51 16 7 N -0.89 -25.61 11.29 55.43 0.63 -24.99 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.53 -11.55 4.59 -228.15 -1.05 -12.59 16 13 C 0.03 0.70 8.39 60.07 0.50 1.20 16 14 C 0.08 1.48 1.75 -67.60 -0.12 1.36 16 15 H 0.08 1.50 4.46 -51.93 -0.23 1.26 16 16 C -0.11 -1.69 5.32 -26.65 -0.14 -1.84 16 17 C 0.06 0.74 6.25 -3.83 -0.02 0.72 16 18 N -0.68 -8.73 6.31 -100.00 -0.63 -9.36 16 19 C 0.11 1.57 0.95 -131.61 -0.12 1.44 16 20 C -0.14 -1.72 8.71 37.15 0.32 -1.39 16 21 C -0.18 -2.44 7.87 37.16 0.29 -2.14 16 22 C -0.13 -2.34 3.46 -26.65 -0.09 -2.43 16 23 H 0.09 2.35 5.92 -51.93 -0.31 2.05 16 24 H 0.01 0.12 6.59 -51.93 -0.34 -0.22 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.07 1.54 6.23 -51.93 -0.32 1.21 16 28 H 0.04 0.80 6.19 -51.93 -0.32 0.48 16 29 H 0.01 0.30 6.42 -51.93 -0.33 -0.03 16 30 H 0.07 1.09 6.32 -51.93 -0.33 0.77 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.40 6.19 -51.93 -0.32 0.08 16 34 H 0.33 3.61 8.79 -39.29 -0.35 3.27 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.91 4.80 -51.93 -0.25 0.66 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 1.34 6.76 -51.92 -0.35 0.99 16 42 H 0.07 1.26 6.30 -51.93 -0.33 0.93 16 LS Contribution 300.86 15.07 4.53 4.53 Total: -1.00 -28.20 300.86 -8.07 -36.28 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.98 Total: 3.08 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 0.45 Total: -13.42 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.05 Total: -46.94 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.20 -8.07 -36.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691729293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.269 kcal (2) G-P(sol) polarization free energy of solvation -28.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds