Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46970 * 2 1 4 4 C 1.50701 * 109.47458 * 120.00457 * 2 1 3 5 5 H 1.07993 * 119.99879 * 119.99840 * 4 2 1 6 6 C 1.37875 * 119.99653 * 299.99866 * 4 2 1 7 7 N 1.31511 * 120.00423 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99585 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46898 * 90.00340 * 8 6 4 10 10 H 1.48495 * 109.46982 * 209.99868 * 8 6 4 11 11 H 1.48500 * 109.47464 * 330.00507 * 8 6 4 12 12 N 1.46902 * 109.46894 * 240.00648 * 2 1 3 13 13 C 1.46906 * 110.99768 * 183.99804 * 12 2 1 14 14 C 1.46900 * 111.00116 * 60.04894 * 12 2 1 15 15 H 1.09001 * 109.51634 * 308.42615 * 14 12 2 16 16 C 1.53115 * 109.52210 * 188.30447 * 14 12 2 17 17 C 1.53034 * 109.27985 * 182.43565 * 16 14 12 18 18 N 1.46849 * 109.52133 * 59.17708 * 17 16 14 19 19 C 1.46843 * 111.20039 * 298.25694 * 18 17 16 20 20 C 1.52992 * 109.46659 * 181.76014 * 19 18 17 21 21 C 1.53004 * 109.46286 * 301.73064 * 19 18 17 22 22 C 1.53041 * 109.51987 * 61.74104 * 19 18 17 23 23 H 1.09006 * 109.46997 * 293.34677 * 1 2 3 24 24 H 1.08998 * 109.47343 * 53.34766 * 1 2 3 25 25 H 1.08998 * 109.46981 * 173.34953 * 1 2 3 26 26 H 0.97004 * 120.00183 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47212 * 60.00053 * 13 12 2 28 28 H 1.09003 * 109.46627 * 180.02562 * 13 12 2 29 29 H 1.08998 * 109.47141 * 299.99470 * 13 12 2 30 30 H 1.09001 * 109.50477 * 302.37770 * 16 14 12 31 31 H 1.09006 * 109.50623 * 62.45449 * 16 14 12 32 32 H 1.09004 * 109.46754 * 179.19252 * 17 16 14 33 33 H 1.08998 * 109.46565 * 299.16017 * 17 16 14 34 34 H 1.00909 * 111.00039 * 174.16140 * 18 17 16 35 35 H 1.09000 * 109.47297 * 59.99987 * 20 19 18 36 36 H 1.09001 * 109.47497 * 180.02562 * 20 19 18 37 37 H 1.09001 * 109.47022 * 300.00075 * 20 19 18 38 38 H 1.08997 * 109.47481 * 59.99469 * 21 19 18 39 39 H 1.09000 * 109.47295 * 179.97438 * 21 19 18 40 40 H 1.08997 * 109.47224 * 299.99586 * 21 19 18 41 41 H 1.09007 * 109.50077 * 180.88270 * 22 19 18 42 42 H 1.08997 * 109.50206 * 60.76436 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.6298 -0.5461 4.4122 10 1 1.3434 -0.9496 5.1119 11 1 2.4861 -2.5665 3.7117 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7953 -1.1867 14 6 1.5495 -0.0255 -2.4211 15 1 0.4691 0.1093 -2.3697 16 6 1.9007 -0.8832 -3.6399 17 6 1.4631 -0.1554 -4.9130 18 7 2.1430 1.1437 -4.9939 19 6 1.7838 2.0027 -3.8584 20 6 2.4778 3.3582 -4.0049 21 6 0.2676 2.2066 -3.8330 22 6 2.2309 1.3392 -2.5537 23 1 -0.3633 0.4073 0.9436 24 1 -0.3634 0.6135 -0.8244 25 1 -0.3633 -1.0207 -0.1190 26 1 0.7082 1.1606 3.4845 27 1 3.8022 -1.3545 -0.3065 28 1 3.8208 -1.3116 -2.0860 29 1 3.9192 0.2040 -1.1583 30 1 2.9773 -1.0513 -3.6685 31 1 1.3846 -1.8409 -3.5718 32 1 1.7247 -0.7570 -5.7835 33 1 0.3845 0.0000 -4.8900 34 1 1.9445 1.6018 -5.8708 35 1 2.1587 3.8313 -4.9336 36 1 2.2116 3.9958 -3.1618 37 1 3.5580 3.2132 -4.0235 38 1 -0.2272 1.2410 -3.7290 39 1 0.0008 2.8438 -2.9899 40 1 -0.0509 2.6799 -4.7617 41 1 1.9502 1.9697 -1.7100 42 1 3.3127 1.2062 -2.5653 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691729293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = -16.346224 kcal Electronic energy + Delta-G solvation = -19007.391815 eV Core-core repulsion = 16407.294826 eV Total energy + Delta-G solvation = -2600.096989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.04470 -38.09374 -35.03048 -33.71191 -31.87276 -30.66444 -28.28124 -28.00713 -27.34724 -25.93700 -24.18813 -22.30485 -20.74492 -19.43736 -18.29222 -17.16225 -16.99515 -16.28001 -16.06958 -15.48129 -15.25989 -14.96132 -14.57327 -14.21111 -13.97671 -13.82939 -13.39198 -13.00579 -12.91536 -12.87461 -12.74225 -12.73382 -12.69081 -12.42039 -12.22228 -11.98726 -11.96987 -11.76486 -11.62583 -11.39018 -10.92655 -10.79786 -10.48922 -9.29220 -8.78974 -8.10611 -6.22541 1.40892 1.41871 1.52675 2.42139 3.16557 3.25790 3.40195 3.86421 3.89097 4.03961 4.20162 4.32175 4.45472 4.52578 4.60777 4.66155 4.69805 4.77121 4.78456 4.84467 4.90436 4.92181 4.99433 5.04027 5.08701 5.09304 5.17603 5.21671 5.24980 5.33573 5.37780 5.50338 5.56412 5.75090 5.83157 6.17452 6.28745 6.44528 6.64074 6.81972 6.94103 7.46756 8.94842 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036006 B = 0.006668 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.466094 B = 4198.341716 C = 4422.196406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.220 3.780 3 H -0.034 1.034 4 C -0.520 4.520 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.920 5.920 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.540 5.540 13 C 0.042 3.958 14 C 0.080 3.920 15 H 0.066 0.934 16 C -0.103 4.103 17 C 0.062 3.938 18 N -0.679 5.679 19 C 0.116 3.884 20 C -0.134 4.134 21 C -0.177 4.177 22 C -0.127 4.127 23 H 0.061 0.939 24 H 0.022 0.978 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.007 0.993 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.351 0.649 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.848 1.622 -15.203 15.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.113 3.887 3 H -0.016 1.016 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.263 5.263 13 C -0.107 4.107 14 C -0.029 4.029 15 H 0.084 0.916 16 C -0.141 4.141 17 C -0.068 4.068 18 N -0.311 5.311 19 C 0.025 3.975 20 C -0.192 4.192 21 C -0.236 4.236 22 C -0.166 4.166 23 H 0.079 0.921 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.055 0.945 34 H 0.171 0.829 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.154 1.004 -14.755 14.835 hybrid contribution -0.410 0.893 1.179 1.535 sum 0.744 1.897 -13.577 13.729 Atomic orbital electron populations 1.21638 0.97801 0.98346 1.00021 1.18965 0.92177 0.90384 0.87152 1.01644 1.21499 1.30903 1.12266 0.91177 0.92402 1.25706 0.95418 0.95810 1.01870 1.70017 1.37794 1.24299 1.23945 0.85548 0.77977 0.79098 0.78965 1.20272 1.20827 1.19334 1.62308 1.10024 1.51785 1.02159 1.22186 0.88423 0.98696 1.01360 1.21842 0.98762 0.91762 0.90503 0.91565 1.21608 1.01692 0.98124 0.92706 1.21920 0.96261 0.90613 0.97959 1.60445 1.61659 1.04301 1.04731 1.20767 0.93085 0.93041 0.90629 1.21780 1.00671 0.94576 1.02160 1.22524 0.96978 1.01780 1.02328 1.22127 1.00620 0.97623 0.96252 0.92056 0.95901 0.95108 0.93004 0.92753 0.90873 0.97494 0.91757 0.91282 0.88754 0.94532 0.82900 0.90647 0.92968 0.92424 0.92724 0.93382 0.90755 0.94742 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.63 71.98 0.62 -5.46 16 2 C 0.22 11.50 1.84 44.17 0.08 11.58 16 3 H -0.03 -1.97 6.62 -2.39 -0.02 -1.99 16 4 C -0.52 -29.34 7.93 25.60 0.20 -29.14 16 5 H 0.06 3.25 6.39 -2.91 -0.02 3.23 16 6 C 0.01 0.58 5.28 84.65 0.45 1.03 16 7 N -0.92 -53.95 11.29 21.45 0.24 -53.71 16 8 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.54 -23.75 4.59 -875.74 -4.02 -27.77 16 13 C 0.04 1.70 8.39 127.69 1.07 2.77 16 14 C 0.08 2.91 1.75 44.99 0.08 2.99 16 15 H 0.07 2.56 4.46 -2.39 -0.01 2.55 16 16 C -0.10 -3.01 5.32 30.64 0.16 -2.85 16 17 C 0.06 1.40 6.25 86.32 0.54 1.94 16 18 N -0.68 -15.39 6.31 -470.29 -2.97 -18.35 16 19 C 0.12 3.07 0.95 3.55 0.00 3.08 16 20 C -0.13 -3.11 8.71 71.98 0.63 -2.49 16 21 C -0.18 -4.47 7.87 71.98 0.57 -3.91 16 22 C -0.13 -4.44 3.46 30.64 0.11 -4.33 16 23 H 0.06 3.43 5.92 -2.38 -0.01 3.41 16 24 H 0.02 1.03 6.59 -2.39 -0.02 1.01 16 25 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.05 2.38 6.23 -2.39 -0.01 2.36 16 28 H 0.07 2.54 6.19 -2.39 -0.01 2.53 16 29 H 0.01 0.28 6.42 -2.39 -0.02 0.26 16 30 H 0.06 1.93 6.32 -2.39 -0.02 1.91 16 31 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.04 0.82 6.19 -2.39 -0.01 0.80 16 34 H 0.35 6.16 8.79 -89.69 -0.79 5.37 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.47 4.80 -2.39 -0.01 1.46 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.42 6.76 -2.38 -0.02 1.40 16 42 H 0.06 2.14 6.30 -2.39 -0.02 2.13 16 Total: -1.00 -61.43 300.86 0.01 -61.42 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.21 Total: 16.68 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 4.51 Total: -24.78 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -6.74 Total: -99.83 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.43 0.01 -61.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691729293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.077 kcal (2) G-P(sol) polarization free energy of solvation -61.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds