Wall clock time and date at job start Mon Mar 30 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46910 * 109.47302 * 2 1 4 4 C 1.46893 * 111.00251 * 199.61324 * 3 2 1 5 5 C 1.53000 * 109.47417 * 66.04376 * 4 3 2 6 6 C 1.52998 * 109.47510 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47074 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00201 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99778 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46976 * 89.99890 * 11 9 7 13 13 H 1.48497 * 109.46890 * 209.99802 * 11 9 7 14 14 H 1.48496 * 109.46734 * 329.99773 * 11 9 7 15 15 C 1.46902 * 110.99717 * 75.65501 * 3 2 1 16 16 C 1.53001 * 109.46765 * 199.73066 * 15 3 2 17 17 C 1.53929 * 113.73229 * 87.32651 * 16 15 3 18 18 N 1.48300 * 86.06402 * 138.12945 * 17 16 15 19 19 C 1.46903 * 111.00744 * 222.42016 * 18 17 16 20 20 C 1.47956 * 90.75381 * 335.30589 * 18 17 16 21 21 H 1.09003 * 109.47076 * 174.75413 * 1 2 3 22 22 H 1.09001 * 109.46905 * 294.74961 * 1 2 3 23 23 H 1.09000 * 109.47665 * 54.74926 * 1 2 3 24 24 H 1.09006 * 109.47443 * 240.00247 * 2 1 3 25 25 H 1.09002 * 109.47727 * 119.99848 * 2 1 3 26 26 H 1.08993 * 109.47190 * 186.04693 * 4 3 2 27 27 H 1.09002 * 109.47307 * 306.04717 * 4 3 2 28 28 H 1.09006 * 109.46985 * 300.00555 * 5 4 3 29 29 H 1.08998 * 109.46983 * 59.99587 * 5 4 3 30 30 H 1.09002 * 109.46695 * 299.99784 * 6 5 4 31 31 H 1.08997 * 109.46954 * 59.99659 * 6 5 4 32 32 H 0.96996 * 120.00125 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.46658 * 79.73229 * 15 3 2 34 34 H 1.08996 * 109.47318 * 319.73413 * 15 3 2 35 35 H 1.09000 * 112.93814 * 315.75502 * 16 15 3 36 36 H 1.09000 * 113.75638 * 252.49762 * 17 16 15 37 37 H 1.08997 * 113.76105 * 23.86558 * 17 16 15 38 38 H 1.08996 * 109.47281 * 159.34584 * 19 18 17 39 39 H 1.08997 * 109.47041 * 279.35223 * 19 18 17 40 40 H 1.08997 * 109.46854 * 39.34657 * 19 18 17 41 41 H 1.09001 * 113.76542 * 270.37559 * 20 18 17 42 42 H 1.08998 * 113.86317 * 139.01709 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4131 1.4508 -0.4603 5 6 3.4839 1.0397 -1.9323 6 6 4.9353 1.1075 -2.4116 7 6 5.0048 0.7032 -3.8617 8 1 4.1040 0.4252 -4.3886 9 6 6.2185 0.6882 -4.5157 10 7 7.3154 1.0272 -3.8742 11 14 6.3049 0.1863 -6.3130 12 1 6.1387 1.3871 -7.1708 13 1 7.6225 -0.4407 -6.5890 14 1 5.2223 -0.7864 -6.6078 15 6 1.8748 1.9946 1.3287 16 6 1.9159 3.5185 1.1979 17 6 0.5422 4.1534 0.9166 18 7 0.9393 5.1979 1.8916 19 6 -0.1774 5.5377 2.7834 20 6 1.8744 4.2575 2.5476 21 1 -0.3633 -1.0234 -0.0940 22 1 -0.3633 0.4302 0.9333 23 1 -0.3634 0.5931 -0.8392 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7847 2.4694 -0.3493 27 1 4.0250 0.7737 0.1358 28 1 3.1121 0.0210 -2.0434 29 1 2.8719 1.7166 -2.5285 30 1 5.3073 2.1261 -2.3006 31 1 5.5468 0.4303 -1.8154 32 1 8.1692 1.0170 -4.3344 33 1 2.6903 1.6629 1.9714 34 1 0.9226 1.6929 1.7650 35 1 2.7049 3.8665 0.5312 36 1 0.4294 4.5221 -0.1029 37 1 -0.2992 3.5433 1.2450 38 1 0.2099 6.0046 3.6890 39 1 -0.8495 6.2301 2.2764 40 1 -0.7213 4.6305 3.0465 41 1 1.4219 3.6776 3.3520 42 1 2.8258 4.7076 2.8312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692699314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:30 Heat of formation + Delta-G solvation = 21.715516 kcal Electronic energy + Delta-G solvation = -17503.415482 eV Core-core repulsion = 14904.968973 eV Total energy + Delta-G solvation = -2598.446508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.06248 -37.56420 -33.75912 -31.73743 -31.65900 -29.59835 -27.12083 -26.15547 -25.30431 -22.97081 -22.56328 -20.74419 -19.86166 -19.44802 -16.32209 -16.07171 -15.68859 -15.29875 -14.88121 -14.63309 -14.39590 -14.04262 -13.62881 -13.41211 -12.81923 -12.58293 -12.35327 -12.09833 -11.81755 -11.51070 -11.45955 -11.35724 -11.04877 -10.95302 -10.76874 -10.61917 -10.51272 -10.34899 -10.32199 -9.52102 -9.28485 -9.02667 -8.91241 -8.30261 -8.01116 -5.95832 -3.97679 3.35016 3.40921 3.44479 3.86653 4.00881 4.49859 4.55346 4.76442 4.95800 5.10890 5.20732 5.28616 5.32351 5.39510 5.40025 5.45733 5.52064 5.58331 5.63969 5.65877 5.71989 5.81358 5.86123 5.93802 6.05362 6.16224 6.18951 6.29426 6.32967 6.42450 6.77014 6.82574 6.93857 7.17911 7.42840 7.46156 7.73246 7.88455 8.05030 8.48515 9.09656 9.66143 11.15653 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.004353 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.235859 B = 6431.442942 C = 6918.555411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.536 5.536 4 C 0.055 3.945 5 C -0.104 4.104 6 C 0.022 3.978 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.062 3.938 16 C -0.105 4.105 17 C 0.016 3.984 18 N -0.488 5.488 19 C -0.010 4.010 20 C 0.002 3.998 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.027 0.973 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.013 0.987 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.068 0.932 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.066 0.934 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.099 3.110 13.669 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.260 5.260 4 C -0.072 4.072 5 C -0.142 4.142 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.113 4.113 18 N -0.210 5.210 19 C -0.159 4.159 20 C -0.127 4.127 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.034 0.966 31 H 0.031 0.969 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.988 4.045 13.105 19.590 hybrid contribution 0.266 -1.416 0.018 1.441 sum -13.722 2.629 13.123 19.168 Atomic orbital electron populations 1.21756 0.95510 1.01047 1.01760 1.22145 0.95545 0.89427 1.01243 1.62075 1.22128 1.17528 1.24269 1.22324 0.86184 1.00870 0.97838 1.21665 1.00672 0.99743 0.92140 1.19073 0.89693 0.97111 0.95730 1.21257 0.93164 1.44935 0.96225 0.92706 1.25028 0.95855 0.95522 0.98103 1.69968 0.98365 1.48849 1.36454 0.86608 0.77273 0.78744 0.85468 1.20658 1.21294 1.19898 1.22131 1.00367 0.93631 0.90554 1.22968 0.98705 0.94079 0.96665 1.24021 0.96679 0.92002 0.98560 1.68557 1.11543 1.30116 1.10827 1.22839 0.94838 1.00540 0.97669 1.23996 0.98502 0.93830 0.96386 0.92789 0.93603 0.91773 0.89807 0.95415 0.91122 0.95515 0.93497 0.92609 0.96614 0.96902 0.93076 0.94689 0.91403 0.87706 0.89167 0.91511 0.91648 0.91307 0.94980 0.91591 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.95 37.15 0.37 -1.24 16 2 C 0.04 0.60 5.55 -3.82 -0.02 0.58 16 3 N -0.54 -7.85 4.37 -234.63 -1.02 -8.87 16 4 C 0.05 0.96 4.78 -3.83 -0.02 0.94 16 5 C -0.10 -2.19 5.12 -26.73 -0.14 -2.32 16 6 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 11 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.06 0.76 4.66 -3.82 -0.02 0.74 16 16 C -0.10 -1.26 3.93 -89.69 -0.35 -1.62 16 17 C 0.02 0.18 7.54 -2.57 -0.02 0.16 16 18 N -0.49 -5.63 6.56 -246.30 -1.62 -7.25 16 19 C -0.01 -0.09 9.65 60.07 0.58 0.49 16 20 C 0.00 0.02 7.55 -2.76 -0.02 0.00 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.04 0.47 6.89 -51.93 -0.36 0.11 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.08 1.26 5.88 -51.93 -0.31 0.96 16 25 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 26 H 0.07 1.24 6.63 -51.93 -0.34 0.90 16 27 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 28 H 0.05 0.97 6.25 -51.93 -0.32 0.64 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 33 H 0.03 0.43 8.00 -51.93 -0.42 0.02 16 34 H 0.07 0.75 6.27 -51.93 -0.33 0.42 16 35 H 0.10 1.47 6.78 -51.93 -0.35 1.12 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 0.70 7.39 -51.93 -0.38 0.32 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.27 7.62 -51.93 -0.40 -0.13 16 41 H 0.07 0.61 7.88 -51.93 -0.41 0.20 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 328.39 15.07 4.95 4.95 Total: -1.00 -30.15 328.39 -9.96 -40.11 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.80 Total: -3.75 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -0.19 Total: -15.53 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: -1.90 Total: -42.70 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.15 -9.96 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692699314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.830 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds