Wall clock time and date at job start Mon Mar 30 2020 03:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46910 * 109.47302 * 2 1 4 4 C 1.46893 * 111.00251 * 199.61324 * 3 2 1 5 5 C 1.53000 * 109.47417 * 66.04376 * 4 3 2 6 6 C 1.52998 * 109.47510 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47074 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00201 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99983 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99778 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00279 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46976 * 89.99890 * 11 9 7 13 13 H 1.48497 * 109.46890 * 209.99802 * 11 9 7 14 14 H 1.48496 * 109.46734 * 329.99773 * 11 9 7 15 15 C 1.46902 * 110.99717 * 75.65501 * 3 2 1 16 16 C 1.53001 * 109.46765 * 199.73066 * 15 3 2 17 17 C 1.53929 * 113.73229 * 87.32651 * 16 15 3 18 18 N 1.48300 * 86.06402 * 138.12945 * 17 16 15 19 19 C 1.46903 * 111.00744 * 222.42016 * 18 17 16 20 20 C 1.47956 * 90.75381 * 335.30589 * 18 17 16 21 21 H 1.09003 * 109.47076 * 174.75413 * 1 2 3 22 22 H 1.09001 * 109.46905 * 294.74961 * 1 2 3 23 23 H 1.09000 * 109.47665 * 54.74926 * 1 2 3 24 24 H 1.09006 * 109.47443 * 240.00247 * 2 1 3 25 25 H 1.09002 * 109.47727 * 119.99848 * 2 1 3 26 26 H 1.08993 * 109.47190 * 186.04693 * 4 3 2 27 27 H 1.09002 * 109.47307 * 306.04717 * 4 3 2 28 28 H 1.09006 * 109.46985 * 300.00555 * 5 4 3 29 29 H 1.08998 * 109.46983 * 59.99587 * 5 4 3 30 30 H 1.09002 * 109.46695 * 299.99784 * 6 5 4 31 31 H 1.08997 * 109.46954 * 59.99659 * 6 5 4 32 32 H 0.96996 * 120.00125 * 180.02562 * 10 9 7 33 33 H 1.09003 * 109.46658 * 79.73229 * 15 3 2 34 34 H 1.08996 * 109.47318 * 319.73413 * 15 3 2 35 35 H 1.09000 * 112.93814 * 315.75502 * 16 15 3 36 36 H 1.09000 * 113.75638 * 252.49762 * 17 16 15 37 37 H 1.08997 * 113.76105 * 23.86558 * 17 16 15 38 38 H 1.08996 * 109.47281 * 159.34584 * 19 18 17 39 39 H 1.08997 * 109.47041 * 279.35223 * 19 18 17 40 40 H 1.08997 * 109.46854 * 39.34657 * 19 18 17 41 41 H 1.09001 * 113.76542 * 270.37559 * 20 18 17 42 42 H 1.08998 * 113.86317 * 139.01709 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 3.4131 1.4508 -0.4603 5 6 3.4839 1.0397 -1.9323 6 6 4.9353 1.1075 -2.4116 7 6 5.0048 0.7032 -3.8617 8 1 4.1040 0.4252 -4.3886 9 6 6.2185 0.6882 -4.5157 10 7 7.3154 1.0272 -3.8742 11 14 6.3049 0.1863 -6.3130 12 1 6.1387 1.3871 -7.1708 13 1 7.6225 -0.4407 -6.5890 14 1 5.2223 -0.7864 -6.6078 15 6 1.8748 1.9946 1.3287 16 6 1.9159 3.5185 1.1979 17 6 0.5422 4.1534 0.9166 18 7 0.9393 5.1979 1.8916 19 6 -0.1774 5.5377 2.7834 20 6 1.8744 4.2575 2.5476 21 1 -0.3633 -1.0234 -0.0940 22 1 -0.3633 0.4302 0.9333 23 1 -0.3634 0.5931 -0.8392 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.7847 2.4694 -0.3493 27 1 4.0250 0.7737 0.1358 28 1 3.1121 0.0210 -2.0434 29 1 2.8719 1.7166 -2.5285 30 1 5.3073 2.1261 -2.3006 31 1 5.5468 0.4303 -1.8154 32 1 8.1692 1.0170 -4.3344 33 1 2.6903 1.6629 1.9714 34 1 0.9226 1.6929 1.7650 35 1 2.7049 3.8665 0.5312 36 1 0.4294 4.5221 -0.1029 37 1 -0.2992 3.5433 1.2450 38 1 0.2099 6.0046 3.6890 39 1 -0.8495 6.2301 2.2764 40 1 -0.7213 4.6305 3.0465 41 1 1.4219 3.6776 3.3520 42 1 2.8258 4.7076 2.8312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692699314.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:29 Heat of formation + Delta-G solvation = 1.197370 kcal Electronic energy + Delta-G solvation = -17504.305215 eV Core-core repulsion = 14904.968973 eV Total energy + Delta-G solvation = -2599.336242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.96767 -38.76880 -35.74274 -33.54927 -32.62793 -30.80491 -28.62110 -27.01339 -26.66875 -24.63387 -23.52118 -22.24364 -21.22852 -20.46172 -18.47296 -17.06444 -16.79135 -16.47281 -16.33466 -15.97204 -15.73502 -15.25241 -14.77293 -14.38030 -14.33183 -13.88003 -13.59592 -13.43695 -13.15292 -12.88219 -12.82618 -12.54567 -12.45755 -12.28811 -12.25960 -11.99378 -11.87676 -11.53794 -11.39126 -11.35326 -11.18996 -11.02337 -10.53900 -9.75172 -9.19137 -8.19460 -6.30507 1.40161 1.41893 1.52955 2.41454 2.90416 3.03468 3.13564 3.64760 3.80456 4.06558 4.18464 4.24107 4.30372 4.37621 4.44464 4.49298 4.56259 4.61765 4.64818 4.68324 4.73431 4.78740 4.85122 4.91107 4.96595 4.99431 5.06222 5.09617 5.15965 5.30309 5.36690 5.39715 5.42908 5.53242 5.76132 5.86891 6.13495 6.15552 6.27470 6.30236 6.86364 7.38691 8.92540 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.029459 B = 0.004353 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.235859 B = 6431.442942 C = 6918.555411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.041 3.959 3 N -0.540 5.540 4 C 0.068 3.932 5 C -0.088 4.088 6 C 0.026 3.974 7 C -0.542 4.542 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.067 3.933 16 C -0.109 4.109 17 C 0.020 3.980 18 N -0.511 5.511 19 C -0.010 4.010 20 C 0.011 3.989 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.065 0.935 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.049 0.951 30 H -0.010 1.010 31 H -0.011 1.011 32 H 0.263 0.737 33 H 0.036 0.964 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 2.611 14.117 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 N -0.264 5.264 4 C -0.060 4.060 5 C -0.126 4.126 6 C -0.012 4.012 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.199 4.199 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.061 4.061 16 C -0.129 4.129 17 C -0.108 4.108 18 N -0.234 5.234 19 C -0.159 4.159 20 C -0.118 4.118 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.008 0.992 31 H 0.008 0.992 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.717 3.548 13.565 21.062 hybrid contribution 0.800 -1.236 -0.078 1.475 sum -14.916 2.311 13.488 20.243 Atomic orbital electron populations 1.21692 0.93345 1.02035 1.02175 1.22215 0.97268 0.88519 1.00697 1.62036 1.19693 1.18579 1.26127 1.22006 0.88274 1.00216 0.95457 1.21400 0.96849 0.99942 0.94405 1.18969 0.92573 0.94724 0.94907 1.21690 0.93608 1.45224 0.97517 0.92323 1.25993 0.95358 0.95260 1.03250 1.70100 0.99043 1.49676 1.38616 0.85444 0.77682 0.78730 0.79187 1.19770 1.20645 1.18696 1.22170 1.01443 0.93412 0.89091 1.22891 0.98418 0.94096 0.97462 1.23981 0.96656 0.92100 0.98058 1.68526 1.12726 1.30457 1.11679 1.22875 0.94252 1.01192 0.97532 1.23982 0.98526 0.93382 0.95880 0.91304 0.92053 0.92680 0.91769 0.94560 0.91670 0.96021 0.93106 0.93197 0.99169 0.99219 0.92777 0.94612 0.89234 0.90392 0.90633 0.89948 0.90830 0.91150 0.93790 0.89593 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.95 71.98 0.72 -1.99 16 2 C 0.04 1.04 5.55 86.30 0.48 1.52 16 3 N -0.54 -15.36 4.37 -896.23 -3.91 -19.27 16 4 C 0.07 2.42 4.78 86.30 0.41 2.83 16 5 C -0.09 -3.78 5.12 30.59 0.16 -3.62 16 6 C 0.03 1.41 4.97 29.85 0.15 1.56 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 10 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 11 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 15 C 0.07 1.52 4.66 86.30 0.40 1.92 16 16 C -0.11 -2.54 3.93 -10.15 -0.04 -2.57 16 17 C 0.02 0.44 7.54 86.34 0.65 1.09 16 18 N -0.51 -11.05 6.56 -933.15 -6.12 -17.17 16 19 C -0.01 -0.16 9.65 127.69 1.23 1.08 16 20 C 0.01 0.22 7.55 86.41 0.65 0.87 16 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 22 H 0.06 1.04 6.89 -2.39 -0.02 1.03 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.06 1.89 5.88 -2.38 -0.01 1.88 16 25 H 0.04 0.87 8.00 -2.39 -0.02 0.85 16 26 H 0.06 2.37 6.63 -2.39 -0.02 2.35 16 27 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 28 H 0.05 2.13 6.25 -2.38 -0.01 2.11 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 32 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 33 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16 34 H 0.09 1.68 6.27 -2.39 -0.01 1.66 16 35 H 0.08 2.24 6.78 -2.39 -0.02 2.22 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 1.50 7.39 -2.39 -0.02 1.48 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.04 0.60 7.62 -2.39 -0.02 0.58 16 41 H 0.09 1.32 7.88 -2.39 -0.02 1.30 16 42 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -65.12 328.39 -1.27 -66.39 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.95 Total: 9.08 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 5.51 Total: -28.45 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -9.75 Total: -94.11 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.12 -1.27 -66.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692699314.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.587 kcal (2) G-P(sol) polarization free energy of solvation -65.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds