Wall clock time and date at job start Mon Mar 30 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47211 * 2 1 4 4 C 1.46904 * 110.99916 * 194.59035 * 3 2 1 5 5 C 1.52993 * 109.47330 * 66.04828 * 4 3 2 6 6 C 1.52994 * 109.47194 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46862 * 179.97438 * 6 5 4 8 8 H 1.07990 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99652 * 179.72394 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.27179 * 9 7 6 11 11 Si 1.86800 * 119.99946 * 180.27368 * 9 7 6 12 12 H 1.48504 * 109.46856 * 89.99618 * 11 9 7 13 13 H 1.48488 * 109.47328 * 209.99725 * 11 9 7 14 14 H 1.48506 * 109.47188 * 330.00241 * 11 9 7 15 15 C 1.46906 * 111.00161 * 70.63688 * 3 2 1 16 16 H 1.09001 * 110.62267 * 313.15799 * 15 3 2 17 17 C 1.55136 * 110.70500 * 76.45755 * 15 3 2 18 18 C 1.54905 * 101.65168 * 154.03812 * 17 15 3 19 19 N 1.47837 * 104.79664 * 322.92812 * 18 17 15 20 20 C 1.46903 * 111.00357 * 146.36640 * 19 18 17 21 21 C 1.47447 * 108.56998 * 24.09439 * 19 18 17 22 22 H 1.09002 * 109.47556 * 174.37399 * 1 2 3 23 23 H 1.09003 * 109.47461 * 294.37782 * 1 2 3 24 24 H 1.09004 * 109.46907 * 54.37456 * 1 2 3 25 25 H 1.08999 * 109.46954 * 239.99489 * 2 1 3 26 26 H 1.09005 * 109.47078 * 120.00276 * 2 1 3 27 27 H 1.09000 * 109.46760 * 306.04156 * 4 3 2 28 28 H 1.09005 * 109.46697 * 186.04727 * 4 3 2 29 29 H 1.09000 * 109.47304 * 59.99637 * 5 4 3 30 30 H 1.09005 * 109.46716 * 299.99939 * 5 4 3 31 31 H 1.08993 * 109.47242 * 59.99913 * 6 5 4 32 32 H 1.09002 * 109.46946 * 299.99096 * 6 5 4 33 33 H 0.97005 * 119.99727 * 179.97438 * 10 9 7 34 34 H 1.09003 * 110.98766 * 272.12446 * 17 15 3 35 35 H 1.08995 * 110.99255 * 35.94290 * 17 15 3 36 36 H 1.09005 * 110.37212 * 204.09737 * 18 17 15 37 37 H 1.09001 * 110.46920 * 81.80431 * 18 17 15 38 38 H 1.09003 * 109.46737 * 299.15942 * 20 19 18 39 39 H 1.08996 * 109.47014 * 59.15368 * 20 19 18 40 40 H 1.08994 * 109.47138 * 179.15820 * 20 19 18 41 41 H 1.08996 * 109.88806 * 239.60856 * 21 19 18 42 42 H 1.09003 * 110.02280 * 118.49005 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4465 1.4388 -0.3455 5 6 3.6380 0.9851 -1.7940 6 6 5.1240 1.0406 -2.1536 7 6 5.3127 0.5931 -3.5802 8 1 4.4582 0.2982 -4.1711 9 6 6.5757 0.5651 -4.1326 10 7 7.6163 0.9239 -3.4129 11 14 6.8087 0.0177 -5.9034 12 1 6.7116 1.1957 -6.8024 13 1 8.1449 -0.6119 -6.0551 14 1 5.7547 -0.9655 -6.2603 15 6 1.7664 2.0329 1.2939 16 1 0.7430 1.8497 1.6212 17 6 2.7830 1.5455 2.3596 18 6 2.8104 2.7462 3.3380 19 7 2.7013 3.9403 2.4733 20 6 1.9487 5.0090 3.1438 21 6 2.0498 3.5475 1.2102 22 1 -0.3634 -1.0227 -0.1007 23 1 -0.3634 0.4242 0.9360 24 1 -0.3633 0.5986 -0.8354 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 4.0062 0.7802 0.3187 28 1 3.8089 2.4608 -0.2339 29 1 3.0782 1.6437 -2.4581 30 1 3.2755 -0.0368 -1.9055 31 1 5.6834 0.3818 -1.4895 32 1 5.4869 2.0624 -2.0420 33 1 8.5049 0.9039 -3.8014 34 1 2.4248 0.6444 2.8575 35 1 3.7648 1.3806 1.9161 36 1 3.7492 2.7631 3.8917 37 1 1.9660 2.6971 4.0255 38 1 0.9402 4.6593 3.3648 39 1 2.4511 5.2796 4.0724 40 1 1.8962 5.8807 2.4916 41 1 2.7132 3.7549 0.3707 42 1 1.1144 4.0935 1.0873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693503152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:40 Heat of formation + Delta-G solvation = 0.201648 kcal Electronic energy + Delta-G solvation = -17910.091299 eV Core-core repulsion = 15310.711880 eV Total energy + Delta-G solvation = -2599.379419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73156 -36.76451 -33.73460 -31.68609 -31.59122 -29.71493 -28.22578 -26.18652 -24.97772 -22.99756 -22.38332 -21.03652 -20.25323 -18.94841 -16.46943 -16.16535 -15.92150 -14.88116 -14.54244 -14.46186 -14.33055 -14.00539 -13.63554 -13.36173 -12.64949 -12.39699 -12.34852 -12.00426 -11.73974 -11.67549 -11.46713 -11.36338 -11.26270 -11.01128 -10.99862 -10.65762 -10.52143 -10.39484 -10.28094 -9.50076 -9.27239 -9.00023 -8.35911 -8.28943 -7.96933 -5.94474 -3.96349 3.35673 3.41600 3.45105 3.87653 4.14778 4.50931 4.68721 4.77927 4.93110 5.17325 5.22723 5.26526 5.32747 5.38474 5.41291 5.47581 5.56195 5.61540 5.71159 5.73081 5.80755 5.87585 5.93674 6.05125 6.10243 6.16461 6.24900 6.31509 6.48245 6.78231 6.80080 6.91831 6.99596 7.18996 7.44295 7.45936 7.74836 7.90283 8.06508 8.49783 9.10989 9.67351 11.16957 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.004965 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.484629 B = 5637.719576 C = 6251.004234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.527 5.527 4 C 0.051 3.949 5 C -0.105 4.105 6 C 0.022 3.978 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.065 3.935 16 H 0.083 0.917 17 C -0.170 4.170 18 C 0.046 3.954 19 N -0.534 5.534 20 C 0.021 3.979 21 C 0.046 3.954 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.260 0.740 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.402 2.685 13.257 19.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.250 5.250 4 C -0.075 4.075 5 C -0.143 4.143 6 C -0.015 4.015 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.045 4.045 16 H 0.101 0.899 17 C -0.210 4.210 18 C -0.082 4.082 19 N -0.258 5.258 20 C -0.127 4.127 21 C -0.082 4.082 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.989 3.168 12.772 18.490 hybrid contribution -0.127 -1.008 -0.080 1.019 sum -13.116 2.160 12.692 18.379 Atomic orbital electron populations 1.21778 0.95556 1.01200 1.01725 1.22129 0.95385 0.89401 1.01373 1.62194 1.18923 1.16503 1.27341 1.22391 0.85669 1.01389 0.98092 1.21675 1.00442 0.99532 0.92612 1.19066 0.89185 0.97149 0.96145 1.21256 0.92673 1.43988 0.97657 0.92738 1.25024 0.96174 0.95556 0.97731 1.69973 0.98696 1.48553 1.36356 0.86615 0.77350 0.78830 0.85327 1.20679 1.21297 1.19917 1.22946 0.98304 0.94528 0.88733 0.89908 1.23450 1.02199 0.97591 0.97715 1.22946 1.00966 0.89190 0.95072 1.63604 1.49267 1.08468 1.04464 1.22527 0.95489 0.95264 0.99440 1.22923 0.98279 0.93948 0.93030 0.92674 0.93562 0.91792 0.89735 0.95207 0.94967 0.90606 0.92680 0.93547 0.96895 0.96570 0.93083 0.91257 0.89240 0.90369 0.93939 0.95778 0.91594 0.91327 0.89038 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.85 37.16 0.37 -1.28 16 2 C 0.04 0.62 5.49 -3.83 -0.02 0.59 16 3 N -0.53 -7.87 4.46 -224.47 -1.00 -8.87 16 4 C 0.05 0.91 3.79 -3.83 -0.01 0.89 16 5 C -0.10 -2.21 5.11 -26.74 -0.14 -2.35 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -14.93 9.11 -34.43 -0.31 -15.25 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.40 13.29 55.43 0.74 -26.66 16 11 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 15 C 0.07 0.84 2.86 -65.89 -0.19 0.65 16 16 H 0.08 0.99 6.45 -51.93 -0.33 0.66 16 17 C -0.17 -2.11 5.73 -24.60 -0.14 -2.25 16 18 C 0.05 0.53 6.73 -2.30 -0.02 0.51 16 19 N -0.53 -6.69 5.44 -239.52 -1.30 -8.00 16 20 C 0.02 0.21 9.12 60.07 0.55 0.76 16 21 C 0.05 0.60 6.37 -2.83 -0.02 0.59 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.48 6.75 -51.93 -0.35 0.13 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.08 1.28 5.97 -51.93 -0.31 0.97 16 26 H 0.03 0.39 7.45 -51.93 -0.39 0.01 16 27 H 0.03 0.58 6.44 -51.93 -0.33 0.25 16 28 H 0.08 1.39 6.15 -51.93 -0.32 1.07 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.96 6.30 -51.93 -0.33 0.63 16 31 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 35 H 0.09 1.29 5.60 -51.93 -0.29 1.00 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.43 7.78 -51.93 -0.40 0.02 16 38 H 0.02 0.22 8.10 -51.93 -0.42 -0.20 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.39 6.18 -51.93 -0.32 1.07 16 42 H 0.06 0.67 7.59 -51.93 -0.39 0.27 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -30.11 318.62 -9.49 -39.60 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -7.53 Total: -2.71 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.17 Total: -15.15 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -1.57 Total: -43.52 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.11 -9.49 -39.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693503152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.805 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds