Wall clock time and date at job start Mon Mar 30 2020 03:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46894 * 109.47211 * 2 1 4 4 C 1.46904 * 110.99916 * 194.59035 * 3 2 1 5 5 C 1.52993 * 109.47330 * 66.04828 * 4 3 2 6 6 C 1.52994 * 109.47194 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.46862 * 179.97438 * 6 5 4 8 8 H 1.07990 * 120.00120 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99652 * 179.72394 * 7 6 5 10 10 N 1.31516 * 119.99921 * 0.27179 * 9 7 6 11 11 Si 1.86800 * 119.99946 * 180.27368 * 9 7 6 12 12 H 1.48504 * 109.46856 * 89.99618 * 11 9 7 13 13 H 1.48488 * 109.47328 * 209.99725 * 11 9 7 14 14 H 1.48506 * 109.47188 * 330.00241 * 11 9 7 15 15 C 1.46906 * 111.00161 * 70.63688 * 3 2 1 16 16 H 1.09001 * 110.62267 * 313.15799 * 15 3 2 17 17 C 1.55136 * 110.70500 * 76.45755 * 15 3 2 18 18 C 1.54905 * 101.65168 * 154.03812 * 17 15 3 19 19 N 1.47837 * 104.79664 * 322.92812 * 18 17 15 20 20 C 1.46903 * 111.00357 * 146.36640 * 19 18 17 21 21 C 1.47447 * 108.56998 * 24.09439 * 19 18 17 22 22 H 1.09002 * 109.47556 * 174.37399 * 1 2 3 23 23 H 1.09003 * 109.47461 * 294.37782 * 1 2 3 24 24 H 1.09004 * 109.46907 * 54.37456 * 1 2 3 25 25 H 1.08999 * 109.46954 * 239.99489 * 2 1 3 26 26 H 1.09005 * 109.47078 * 120.00276 * 2 1 3 27 27 H 1.09000 * 109.46760 * 306.04156 * 4 3 2 28 28 H 1.09005 * 109.46697 * 186.04727 * 4 3 2 29 29 H 1.09000 * 109.47304 * 59.99637 * 5 4 3 30 30 H 1.09005 * 109.46716 * 299.99939 * 5 4 3 31 31 H 1.08993 * 109.47242 * 59.99913 * 6 5 4 32 32 H 1.09002 * 109.46946 * 299.99096 * 6 5 4 33 33 H 0.97005 * 119.99727 * 179.97438 * 10 9 7 34 34 H 1.09003 * 110.98766 * 272.12446 * 17 15 3 35 35 H 1.08995 * 110.99255 * 35.94290 * 17 15 3 36 36 H 1.09005 * 110.37212 * 204.09737 * 18 17 15 37 37 H 1.09001 * 110.46920 * 81.80431 * 18 17 15 38 38 H 1.09003 * 109.46737 * 299.15942 * 20 19 18 39 39 H 1.08996 * 109.47014 * 59.15368 * 20 19 18 40 40 H 1.08994 * 109.47138 * 179.15820 * 20 19 18 41 41 H 1.08996 * 109.88806 * 239.60856 * 21 19 18 42 42 H 1.09003 * 110.02280 * 118.49005 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4465 1.4388 -0.3455 5 6 3.6380 0.9851 -1.7940 6 6 5.1240 1.0406 -2.1536 7 6 5.3127 0.5931 -3.5802 8 1 4.4582 0.2982 -4.1711 9 6 6.5757 0.5651 -4.1326 10 7 7.6163 0.9239 -3.4129 11 14 6.8087 0.0177 -5.9034 12 1 6.7116 1.1957 -6.8024 13 1 8.1449 -0.6119 -6.0551 14 1 5.7547 -0.9655 -6.2603 15 6 1.7664 2.0329 1.2939 16 1 0.7430 1.8497 1.6212 17 6 2.7830 1.5455 2.3596 18 6 2.8104 2.7462 3.3380 19 7 2.7013 3.9403 2.4733 20 6 1.9487 5.0090 3.1438 21 6 2.0498 3.5475 1.2102 22 1 -0.3634 -1.0227 -0.1007 23 1 -0.3634 0.4242 0.9360 24 1 -0.3633 0.5986 -0.8354 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 4.0062 0.7802 0.3187 28 1 3.8089 2.4608 -0.2339 29 1 3.0782 1.6437 -2.4581 30 1 3.2755 -0.0368 -1.9055 31 1 5.6834 0.3818 -1.4895 32 1 5.4869 2.0624 -2.0420 33 1 8.5049 0.9039 -3.8014 34 1 2.4248 0.6444 2.8575 35 1 3.7648 1.3806 1.9161 36 1 3.7492 2.7631 3.8917 37 1 1.9660 2.6971 4.0255 38 1 0.9402 4.6593 3.3648 39 1 2.4511 5.2796 4.0724 40 1 1.8962 5.8807 2.4916 41 1 2.7132 3.7549 0.3707 42 1 1.1144 4.0935 1.0873 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693503152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:40 Heat of formation + Delta-G solvation = -19.954875 kcal Electronic energy + Delta-G solvation = -17910.965352 eV Core-core repulsion = 15310.711880 eV Total energy + Delta-G solvation = -2600.253472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.80285 -37.92660 -35.71199 -33.56014 -32.54956 -30.90369 -29.51606 -27.74465 -26.06184 -24.69297 -23.46899 -22.32268 -21.70307 -20.17406 -18.45584 -17.36159 -17.11257 -16.48157 -16.06746 -15.89280 -15.47606 -14.95845 -14.70701 -14.41850 -14.32977 -14.01596 -13.52412 -13.33054 -13.12039 -12.89557 -12.65318 -12.60584 -12.49171 -12.38341 -12.29412 -12.26806 -12.08363 -11.77334 -11.55392 -11.29477 -11.23541 -11.04375 -10.53867 -9.28861 -9.16169 -8.19037 -6.30323 1.40260 1.42106 1.53187 2.41609 2.81482 3.13914 3.14808 3.69072 3.81730 3.89222 4.10335 4.21276 4.29205 4.36041 4.37776 4.51100 4.52175 4.60084 4.66266 4.68627 4.74396 4.80896 4.91066 4.95661 4.98034 5.03854 5.08893 5.11444 5.16937 5.23982 5.30679 5.39360 5.52770 5.75647 5.86582 5.94147 6.11012 6.15578 6.27051 6.29066 6.86481 7.38902 8.93018 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.004965 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.484629 B = 5637.719576 C = 6251.004234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.042 3.958 3 N -0.530 5.530 4 C 0.069 3.931 5 C -0.089 4.089 6 C 0.027 3.973 7 C -0.542 4.542 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.263 1.263 15 C 0.068 3.932 16 H 0.103 0.897 17 C -0.168 4.168 18 C 0.050 3.950 19 N -0.556 5.556 20 C 0.022 3.978 21 C 0.049 3.951 22 H 0.070 0.930 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.026 0.974 28 H 0.064 0.936 29 H 0.050 0.950 30 H 0.051 0.949 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.263 0.737 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.190 2.271 13.582 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 N -0.254 5.254 4 C -0.059 4.059 5 C -0.127 4.127 6 C -0.010 4.010 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.198 1.198 13 H -0.206 1.206 14 H -0.187 1.187 15 C -0.041 4.041 16 H 0.121 0.879 17 C -0.207 4.207 18 C -0.077 4.077 19 N -0.281 5.281 20 C -0.126 4.126 21 C -0.079 4.079 22 H 0.089 0.911 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.799 2.757 13.110 19.962 hybrid contribution 0.442 -0.852 -0.128 0.968 sum -14.357 1.905 12.983 19.450 Atomic orbital electron populations 1.21714 0.93263 1.02265 1.02157 1.22195 0.97196 0.88372 1.00794 1.62133 1.16444 1.17655 1.29134 1.22012 0.87872 1.00306 0.95663 1.21415 0.96558 0.99863 0.94841 1.18951 0.92308 0.94657 0.95119 1.21680 0.93200 1.44302 0.98804 0.92281 1.25998 0.95747 0.95356 1.02749 1.70110 0.99298 1.49422 1.38627 0.85436 0.77644 0.78736 0.79171 1.19754 1.20650 1.18675 1.23007 0.99378 0.94098 0.87637 0.87878 1.23388 1.00612 0.98849 0.97860 1.22944 1.01865 0.88104 0.94833 1.63535 1.50284 1.09528 1.04752 1.22566 0.95980 0.94449 0.99623 1.22813 0.98077 0.94370 0.92678 0.91095 0.92150 0.92511 0.91568 0.94553 0.95545 0.91756 0.93159 0.93049 0.99308 0.99302 0.92783 0.89709 0.91890 0.90422 0.91831 0.94501 0.90576 0.91277 0.91983 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.85 71.98 0.71 -2.05 16 2 C 0.04 1.10 5.49 86.30 0.47 1.57 16 3 N -0.53 -15.54 4.46 -864.09 -3.85 -19.39 16 4 C 0.07 2.51 3.79 86.30 0.33 2.84 16 5 C -0.09 -3.86 5.11 30.59 0.16 -3.71 16 6 C 0.03 1.50 4.97 29.85 0.15 1.65 16 7 C -0.54 -31.88 9.11 25.60 0.23 -31.65 16 8 H 0.06 3.34 7.74 -2.92 -0.02 3.32 16 9 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 10 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 11 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.07 1.66 2.86 46.09 0.13 1.79 16 16 H 0.10 2.14 6.45 -2.39 -0.02 2.12 16 17 C -0.17 -3.95 5.73 31.98 0.18 -3.76 16 18 C 0.05 1.05 6.73 86.77 0.58 1.64 16 19 N -0.56 -13.29 5.44 -911.70 -4.96 -18.25 16 20 C 0.02 0.39 9.12 127.69 1.16 1.56 16 21 C 0.05 1.24 6.37 86.65 0.55 1.79 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.06 1.05 6.75 -2.39 -0.02 1.04 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.07 1.97 5.97 -2.39 -0.01 1.95 16 26 H 0.04 0.90 7.45 -2.38 -0.02 0.88 16 27 H 0.03 0.99 6.44 -2.39 -0.02 0.97 16 28 H 0.06 2.49 6.15 -2.38 -0.01 2.47 16 29 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.05 2.17 6.30 -2.38 -0.02 2.15 16 31 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 32 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 33 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 34 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 35 H 0.06 1.83 5.60 -2.39 -0.01 1.82 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.06 1.08 7.78 -2.39 -0.02 1.06 16 38 H 0.04 0.57 8.10 -2.39 -0.02 0.55 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.94 6.18 -2.39 -0.01 1.93 16 42 H 0.07 1.52 7.59 -2.39 -0.02 1.51 16 Total: -1.00 -65.39 318.62 -0.42 -65.80 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.96 Total: 10.57 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 5.13 Total: -27.93 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -8.53 Total: -95.68 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -65.39 -0.42 -65.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693503152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.848 kcal (2) G-P(sol) polarization free energy of solvation -65.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds