Wall clock time and date at job start Mon Mar 30 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46817 * 2 1 4 4 C 1.50698 * 109.47271 * 240.00248 * 2 1 3 5 5 H 1.08007 * 119.99976 * 239.99817 * 4 2 1 6 6 C 1.37878 * 120.00344 * 59.99334 * 4 2 1 7 7 N 1.31511 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47047 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47310 * 300.00298 * 8 6 4 11 11 H 1.48501 * 109.47318 * 60.00216 * 8 6 4 12 12 N 1.46896 * 109.47243 * 120.00034 * 2 1 3 13 13 C 1.46908 * 110.99683 * 275.00024 * 12 2 1 14 14 H 1.08999 * 110.64122 * 36.69948 * 13 12 2 15 15 C 1.54601 * 110.72508 * 273.54524 * 13 12 2 16 16 C 1.53985 * 105.13986 * 219.68559 * 15 13 12 17 17 N 1.47902 * 107.06235 * 358.77691 * 16 15 13 18 18 C 1.46894 * 111.00408 * 145.84502 * 17 16 15 19 19 C 1.53000 * 109.47373 * 55.22371 * 18 17 16 20 20 C 1.53004 * 109.47232 * 175.22690 * 18 17 16 21 21 C 1.53000 * 109.47152 * 295.22253 * 18 17 16 22 22 C 1.48536 * 105.81721 * 25.32605 * 17 16 15 23 23 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47311 * 300.00172 * 1 2 3 25 25 H 1.09001 * 109.47093 * 60.00388 * 1 2 3 26 26 H 0.96997 * 119.99868 * 179.97438 * 7 6 4 27 27 H 1.00895 * 111.00180 * 38.94932 * 12 2 1 28 28 H 1.08994 * 110.30589 * 338.60279 * 15 13 12 29 29 H 1.09001 * 110.30515 * 100.76633 * 15 13 12 30 30 H 1.08997 * 109.91834 * 118.12750 * 16 15 13 31 31 H 1.08994 * 109.91789 * 239.22704 * 16 15 13 32 32 H 1.08998 * 109.47136 * 60.00103 * 19 18 17 33 33 H 1.08993 * 109.47094 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.46716 * 300.00280 * 19 18 17 35 35 H 1.09001 * 109.47462 * 59.99696 * 20 18 17 36 36 H 1.09002 * 109.47334 * 179.97438 * 20 18 17 37 37 H 1.08998 * 109.46884 * 299.99656 * 20 18 17 38 38 H 1.09008 * 109.47056 * 52.82677 * 21 18 17 39 39 H 1.08992 * 109.47575 * 172.82779 * 21 18 17 40 40 H 1.09006 * 109.47498 * 292.83387 * 21 18 17 41 41 H 1.08996 * 110.66998 * 202.35871 * 22 17 16 42 42 H 1.09007 * 110.66317 * 79.23092 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8269 -0.4199 -5.2205 10 1 3.8064 -1.1209 -4.0081 11 1 1.8259 -2.5203 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2227 2.3469 14 1 1.2477 0.9233 2.3257 15 6 3.4308 0.9786 2.3706 16 6 3.8342 1.0349 3.8557 17 7 2.7561 0.3748 4.6235 18 6 3.2991 -0.3370 5.7881 19 6 4.1170 0.6330 6.6430 20 6 2.1480 -0.9049 6.6209 21 6 4.1977 -1.4807 5.3133 22 6 2.1054 -0.5686 3.6787 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7094 1.1616 -3.4844 27 1 1.4496 -1.4978 1.4100 28 1 4.1798 0.4344 1.7955 29 1 3.3066 1.9862 1.9739 30 1 4.7747 0.5047 4.0053 31 1 3.9385 2.0723 4.1731 32 1 3.4769 1.4477 6.9813 33 1 4.5195 0.1049 7.5073 34 1 4.9370 1.0375 6.0497 35 1 1.5653 -1.5960 6.0119 36 1 2.5509 -1.4336 7.4848 37 1 1.5079 -0.0902 6.9591 38 1 4.9419 -1.0932 4.6175 39 1 4.7002 -1.9280 6.1709 40 1 3.5911 -2.2358 4.8131 41 1 1.0919 -0.8021 4.0049 42 1 2.6966 -1.4786 3.5753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693908980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:30 Heat of formation + Delta-G solvation = 1.807613 kcal Electronic energy + Delta-G solvation = -18264.628011 eV Core-core repulsion = 15665.318232 eV Total energy + Delta-G solvation = -2599.309780 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.70550 -36.33669 -34.09866 -31.98261 -29.24113 -28.96066 -27.38882 -27.17949 -25.64150 -25.02797 -21.92720 -20.52973 -19.50509 -18.39875 -16.46583 -15.99987 -15.63075 -14.72179 -14.24894 -14.22464 -13.81141 -13.76417 -13.16514 -12.68261 -12.45971 -12.33250 -12.11391 -11.90439 -11.62072 -11.49959 -11.32047 -11.06207 -10.99867 -10.92834 -10.83471 -10.66754 -10.55499 -10.34169 -10.17341 -9.97446 -9.73258 -8.94819 -8.32877 -8.15916 -7.22360 -5.95328 -3.98548 3.35925 3.39850 3.43114 4.05198 4.46796 4.74709 4.87207 5.03233 5.14140 5.28668 5.33292 5.36693 5.48347 5.52814 5.56187 5.66556 5.73194 5.77685 5.81654 5.86103 5.94879 6.03981 6.13284 6.19607 6.26907 6.31045 6.44833 6.61019 6.69084 6.75207 6.87163 7.10754 7.15105 7.28812 7.45966 7.77707 7.92489 8.32395 8.57594 8.66547 9.08323 9.66604 11.11717 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044800 B = 0.004984 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.853221 B = 5616.905473 C = 5704.407436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.278 1.278 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.086 3.914 14 H 0.047 0.953 15 C -0.119 4.119 16 C 0.036 3.964 17 N -0.506 5.506 18 C 0.092 3.908 19 C -0.139 4.139 20 C -0.135 4.135 21 C -0.183 4.183 22 C 0.030 3.970 23 H 0.027 0.973 24 H 0.005 0.995 25 H 0.088 0.912 26 H 0.260 0.740 27 H 0.325 0.675 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.090 -1.618 16.194 16.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.533 4.533 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.725 3.275 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.204 1.204 12 N -0.307 5.307 13 C -0.025 4.025 14 H 0.065 0.935 15 C -0.158 4.158 16 C -0.092 4.092 17 N -0.230 5.230 18 C 0.002 3.998 19 C -0.197 4.197 20 C -0.192 4.192 21 C -0.242 4.242 22 C -0.098 4.098 23 H 0.046 0.954 24 H 0.024 0.976 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.141 0.859 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.310 -1.026 16.094 16.693 hybrid contribution -0.115 -0.892 -1.001 1.346 sum 4.196 -1.918 15.093 15.783 Atomic orbital electron populations 1.22432 1.00800 0.99115 1.00478 1.19169 0.89488 0.94419 0.86413 0.94832 1.21118 1.30183 1.12378 0.89663 0.92112 1.24944 0.95370 0.95211 0.98988 1.69876 1.37316 1.23174 1.23377 0.86583 0.79143 0.79604 0.82149 1.21483 1.20354 1.20413 1.60902 1.57826 1.08783 1.03174 1.22291 0.96309 0.94336 0.89579 0.93530 1.22425 0.98394 1.00713 0.94292 1.22889 0.93531 0.99139 0.93656 1.64951 1.25391 1.26483 1.06186 1.21183 0.93997 0.92689 0.91969 1.21879 0.99577 0.99191 0.99003 1.21803 0.97708 1.00759 0.98975 1.22522 1.00482 0.99473 1.01679 1.23434 0.99111 0.95325 0.91918 0.95417 0.97596 0.89336 0.93059 0.85859 0.90315 0.91862 0.93563 0.91133 0.91964 0.92552 0.92556 0.92637 0.92644 0.91990 0.92032 0.92440 0.91870 0.90971 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.93 37.16 0.33 -3.78 16 2 C 0.21 5.37 2.44 -68.87 -0.17 5.20 16 3 H 0.03 0.94 7.75 -51.93 -0.40 0.54 16 4 C -0.49 -13.73 8.84 -34.44 -0.30 -14.04 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -25.88 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -14.31 6.04 -99.01 -0.60 -14.91 16 13 C 0.09 1.57 3.14 -65.85 -0.21 1.37 16 14 H 0.05 0.93 7.22 -51.93 -0.38 0.56 16 15 C -0.12 -2.05 6.50 -25.38 -0.16 -2.22 16 16 C 0.04 0.51 5.10 -2.76 -0.01 0.49 16 17 N -0.51 -7.06 5.09 -214.86 -1.09 -8.15 16 18 C 0.09 1.06 0.69 -131.60 -0.09 0.97 16 19 C -0.14 -1.41 8.27 37.16 0.31 -1.10 16 20 C -0.13 -1.42 8.48 37.16 0.32 -1.10 16 21 C -0.18 -2.07 7.59 37.16 0.28 -1.78 16 22 C 0.03 0.46 4.91 -1.90 -0.01 0.45 16 23 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 24 H 0.01 0.11 7.45 -51.93 -0.39 -0.27 16 25 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.32 6.54 8.24 -39.29 -0.32 6.21 16 28 H 0.08 1.46 8.05 -51.93 -0.42 1.04 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 0.62 5.29 -51.93 -0.27 0.34 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 6.77 -51.93 -0.35 0.22 16 35 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 36 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.75 6.06 -51.92 -0.31 0.43 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.75 6.37 -51.93 -0.33 0.42 16 41 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 42 H 0.06 0.92 5.55 -51.92 -0.29 0.63 16 LS Contribution 314.43 15.07 4.74 4.74 Total: -1.00 -28.06 314.43 -8.64 -36.71 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.48 Total: 4.37 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 0.18 Total: -14.11 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -1.06 Total: -48.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.06 -8.64 -36.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693908980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.513 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds