Wall clock time and date at job start Mon Mar 30 2020 03:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46817 * 2 1 4 4 C 1.50698 * 109.47271 * 240.00248 * 2 1 3 5 5 H 1.08007 * 119.99976 * 239.99817 * 4 2 1 6 6 C 1.37878 * 120.00344 * 59.99334 * 4 2 1 7 7 N 1.31511 * 119.99835 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47047 * 180.02562 * 8 6 4 10 10 H 1.48505 * 109.47310 * 300.00298 * 8 6 4 11 11 H 1.48501 * 109.47318 * 60.00216 * 8 6 4 12 12 N 1.46896 * 109.47243 * 120.00034 * 2 1 3 13 13 C 1.46908 * 110.99683 * 275.00024 * 12 2 1 14 14 H 1.08999 * 110.64122 * 36.69948 * 13 12 2 15 15 C 1.54601 * 110.72508 * 273.54524 * 13 12 2 16 16 C 1.53985 * 105.13986 * 219.68559 * 15 13 12 17 17 N 1.47902 * 107.06235 * 358.77691 * 16 15 13 18 18 C 1.46894 * 111.00408 * 145.84502 * 17 16 15 19 19 C 1.53000 * 109.47373 * 55.22371 * 18 17 16 20 20 C 1.53004 * 109.47232 * 175.22690 * 18 17 16 21 21 C 1.53000 * 109.47152 * 295.22253 * 18 17 16 22 22 C 1.48536 * 105.81721 * 25.32605 * 17 16 15 23 23 H 1.09006 * 109.46817 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47311 * 300.00172 * 1 2 3 25 25 H 1.09001 * 109.47093 * 60.00388 * 1 2 3 26 26 H 0.96997 * 119.99868 * 179.97438 * 7 6 4 27 27 H 1.00895 * 111.00180 * 38.94932 * 12 2 1 28 28 H 1.08994 * 110.30589 * 338.60279 * 15 13 12 29 29 H 1.09001 * 110.30515 * 100.76633 * 15 13 12 30 30 H 1.08997 * 109.91834 * 118.12750 * 16 15 13 31 31 H 1.08994 * 109.91789 * 239.22704 * 16 15 13 32 32 H 1.08998 * 109.47136 * 60.00103 * 19 18 17 33 33 H 1.08993 * 109.47094 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.46716 * 300.00280 * 19 18 17 35 35 H 1.09001 * 109.47462 * 59.99696 * 20 18 17 36 36 H 1.09002 * 109.47334 * 179.97438 * 20 18 17 37 37 H 1.08998 * 109.46884 * 299.99656 * 20 18 17 38 38 H 1.09008 * 109.47056 * 52.82677 * 21 18 17 39 39 H 1.08992 * 109.47575 * 172.82779 * 21 18 17 40 40 H 1.09006 * 109.47498 * 292.83387 * 21 18 17 41 41 H 1.08996 * 110.66998 * 202.35871 * 22 17 16 42 42 H 1.09007 * 110.66317 * 79.23092 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8269 -0.4199 -5.2205 10 1 3.8064 -1.1209 -4.0081 11 1 1.8259 -2.5203 -4.0077 12 7 2.0197 -0.6925 1.1994 13 6 2.0824 0.2227 2.3469 14 1 1.2477 0.9233 2.3257 15 6 3.4308 0.9786 2.3706 16 6 3.8342 1.0349 3.8557 17 7 2.7561 0.3748 4.6235 18 6 3.2991 -0.3370 5.7881 19 6 4.1170 0.6330 6.6430 20 6 2.1480 -0.9049 6.6209 21 6 4.1977 -1.4807 5.3133 22 6 2.1054 -0.5686 3.6787 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7094 1.1616 -3.4844 27 1 1.4496 -1.4978 1.4100 28 1 4.1798 0.4344 1.7955 29 1 3.3066 1.9862 1.9739 30 1 4.7747 0.5047 4.0053 31 1 3.9385 2.0723 4.1731 32 1 3.4769 1.4477 6.9813 33 1 4.5195 0.1049 7.5073 34 1 4.9370 1.0375 6.0497 35 1 1.5653 -1.5960 6.0119 36 1 2.5509 -1.4336 7.4848 37 1 1.5079 -0.0902 6.9591 38 1 4.9419 -1.0932 4.6175 39 1 4.7002 -1.9280 6.1709 40 1 3.5911 -2.2358 4.8131 41 1 1.0919 -0.8021 4.0049 42 1 2.6966 -1.4786 3.5753 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693908980.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:30 Heat of formation + Delta-G solvation = -16.784605 kcal Electronic energy + Delta-G solvation = -18265.434230 eV Core-core repulsion = 15665.318232 eV Total energy + Delta-G solvation = -2600.115999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85783 -37.91143 -35.64633 -33.82717 -30.72531 -30.28336 -28.32261 -28.24485 -27.28983 -26.87582 -23.14165 -22.37876 -21.00537 -19.46863 -18.38243 -17.34189 -16.99394 -16.61124 -15.54553 -15.43752 -15.02419 -14.83324 -14.77239 -14.43152 -13.81467 -13.60423 -13.44762 -12.95308 -12.93262 -12.87102 -12.76614 -12.58069 -12.46339 -12.36916 -12.18242 -12.12519 -12.08103 -11.83936 -11.65515 -11.48385 -11.35190 -10.99908 -10.47619 -9.25801 -8.99873 -8.08769 -6.20084 1.43553 1.45266 1.53031 2.44278 2.95093 3.19622 3.68499 3.71909 3.81131 4.05601 4.10142 4.20867 4.30770 4.37156 4.61532 4.67357 4.71740 4.74621 4.75202 4.86865 4.90791 4.93685 4.96673 4.98490 5.03867 5.04437 5.11616 5.19993 5.22292 5.26404 5.36974 5.48778 5.50186 5.69457 5.82670 5.97809 6.24309 6.28847 6.66164 6.84342 6.95277 7.49911 8.96817 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044800 B = 0.004984 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.853221 B = 5616.905473 C = 5704.407436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.220 3.780 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.271 1.271 12 N -0.676 5.676 13 C 0.082 3.918 14 H 0.028 0.972 15 C -0.119 4.119 16 C 0.046 3.954 17 N -0.512 5.512 18 C 0.087 3.913 19 C -0.136 4.136 20 C -0.133 4.133 21 C -0.180 4.180 22 C 0.044 3.956 23 H 0.033 0.967 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 -2.607 17.592 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.111 3.889 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.196 1.196 12 N -0.306 5.306 13 C -0.029 4.029 14 H 0.046 0.954 15 C -0.158 4.158 16 C -0.082 4.082 17 N -0.236 5.236 18 C -0.002 4.002 19 C -0.194 4.194 20 C -0.190 4.190 21 C -0.238 4.238 22 C -0.084 4.084 23 H 0.052 0.948 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.149 0.851 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.990 -2.023 17.517 18.326 hybrid contribution -0.320 -0.559 -1.385 1.528 sum 4.670 -2.582 16.131 16.991 Atomic orbital electron populations 1.22242 1.00180 0.99240 0.99877 1.18893 0.89813 0.92589 0.87569 0.98308 1.21412 1.30426 1.12447 0.91024 0.92713 1.25724 0.95460 0.95865 1.01910 1.70011 1.38065 1.24287 1.24005 0.85571 0.78592 0.78701 0.78471 1.21038 1.19972 1.19569 1.60774 1.57491 1.09214 1.03129 1.22332 0.96161 0.94136 0.90238 0.95407 1.22373 0.97376 0.99522 0.96526 1.22796 0.94031 1.00101 0.91263 1.64989 1.25618 1.26617 1.06408 1.21354 0.94692 0.93046 0.91155 1.21866 0.99198 0.98950 0.99347 1.21797 0.97230 1.00627 0.99367 1.22486 1.00087 0.99098 1.02151 1.23258 0.99829 0.95032 0.90265 0.94770 0.95980 0.92041 0.93042 0.85116 0.92012 0.93075 0.92414 0.90077 0.92195 0.90597 0.92745 0.93263 0.90645 0.92299 0.93040 0.90474 0.92694 0.90299 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.70 8.93 71.98 0.64 -7.05 16 2 C 0.22 11.35 2.44 44.17 0.11 11.46 16 3 H 0.00 -0.06 7.75 -2.38 -0.02 -0.08 16 4 C -0.51 -28.93 8.84 25.60 0.23 -28.71 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.47 5.30 84.66 0.45 0.92 16 7 N -0.92 -54.06 11.32 21.45 0.24 -53.81 16 8 Si 0.96 44.39 29.54 68.60 2.03 46.42 16 9 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 N -0.68 -28.87 6.04 -467.15 -2.82 -31.69 16 13 C 0.08 3.03 3.14 46.12 0.14 3.17 16 14 H 0.03 1.14 7.22 -2.39 -0.02 1.12 16 15 C -0.12 -4.15 6.50 31.47 0.20 -3.95 16 16 C 0.05 1.25 5.10 86.44 0.44 1.69 16 17 N -0.51 -13.47 5.09 -833.70 -4.24 -17.72 16 18 C 0.09 1.79 0.69 3.53 0.00 1.79 16 19 C -0.14 -2.37 8.27 71.98 0.60 -1.77 16 20 C -0.13 -2.44 8.48 71.98 0.61 -1.82 16 21 C -0.18 -3.61 7.59 71.98 0.55 -3.07 16 22 C 0.04 1.29 4.91 86.65 0.43 1.72 16 23 H 0.03 1.59 8.13 -2.38 -0.02 1.57 16 24 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 25 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.33 13.26 8.24 -89.70 -0.74 12.53 16 28 H 0.06 2.34 8.05 -2.39 -0.02 2.32 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.06 1.45 5.29 -2.39 -0.01 1.44 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.97 6.77 -2.39 -0.02 0.95 16 35 H 0.05 0.96 7.15 -2.39 -0.02 0.94 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.14 6.06 -2.38 -0.01 1.12 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 1.19 6.37 -2.38 -0.02 1.18 16 41 H 0.08 2.21 7.72 -2.39 -0.02 2.19 16 42 H 0.06 1.82 5.55 -2.38 -0.01 1.81 16 Total: -1.00 -59.96 314.43 -0.16 -60.12 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.24 Total: 22.28 kcal Atomic # 6 Polarization: -30.00 SS G_CDS: 4.40 Total: -25.60 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -6.82 Total: -103.22 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -59.96 -0.16 -60.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693908980.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.337 kcal (2) G-P(sol) polarization free energy of solvation -59.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds